KCC001821A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001821A_C01 KCC001821A_c01
actaccctagcaggccttggttgaagcacctggggcactacttctcggatcgccgcacgc
agataactggcaagcagcgtTGCACCAAGTACAAGTACGACTCAAAGAACCTGTCGCCTG
GGCTCTTTGTGATGCACTGCCTCAACTGCGGTGTGTGCCTGGGCTTTCACATGTTGGAGA
ATGCGGAGTCCCCCCAGGCCCTGTTTGAGGTCCTGTACACCCGGTGGCCACAGCCACCCA
AGGTGGTGGTGTACGACAACAACTGCCACGCGCATGCGTACTTCCTGAACCGGGAGCCGG
AGTGGGTCACAAACACATTGTTTGTGATCGACAAAACACATTTCCGGGGTCATACGGGAT
GCTGCAAAGCATATGACATCGCGCGCTACAGCTCGCTGGTGAGCCTCAACTCCCAGTTAG
CTGAGCAGCGCAACGCCAAGCTGGCAATGCTCAAGTCTCACTGCGCCTACATGTCGCAGC
CGCTATTCCTCGTGTATGTGCGGCACTTTCTGTACATGACCGACAAGCTGAGCAAGCGCG
CTGAGAATGCACGCTAGTTTTGAGGCCGGTATGCACAATGGGTGCGGTTGTGCGTATTTG
ACCTGTGTGGAAGGGTTGCCGATAGCAGTCACGCCGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001821A_C01 KCC001821A_c01
         (637 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_311331.1| ENSANGP00000001657 [Anopheles gambiae] gi|30177...    49  8e-05
gb|EAA42242.1| GLP_49_63778_65430 [Giardia lamblia ATCC 50803]         39  0.048
ref|NP_012685.1| Delayed Anaerobic Gene; Dan4p [Saccharomyces ce...    39  0.048
ref|XP_352757.1| similar to hypothetical protein [Homo sapiens]        38  0.11
ref|NP_298556.1| 1,4-beta-cellobiosidase [Xylella fastidiosa 9a5...    38  0.14

>ref|XP_311331.1| ENSANGP00000001657 [Anopheles gambiae] gi|30177813|gb|EAA06779.2|
           ENSANGP00000001657 [Anopheles gambiae str. PEST]
          Length = 283

 Score = 48.5 bits (114), Expect = 8e-05
 Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 1/193 (0%)
 Frame = +1

Query: 40  TSRIAARR*LASSVAPSTSTTQRTCRLGSL*CTASTAVCAWAFT-CWRMRSPPRPCLRSC 216
           TS  ++     SS   S S+   +C  G+  C+++T+ C+   T C    S    C  SC
Sbjct: 24  TSSCSSSTSSGSSGTTSCSSCTSSCSSGTSSCSSATSSCSSGTTSCTSSTSSSNSCTSSC 83

Query: 217 TPGGHSHPRWWCTTTTATRMRTS*TGSRSGSQTHCL*STKHISGVIRDAAKHMTSRATAR 396
           + G  S      ++++ T   +S T S S   + C  ST   S              T+ 
Sbjct: 84  SSGTSSRSSSTTSSSSGTSSCSSGTTSSSSCASSCSSSTSSCSS------------GTSS 131

Query: 397 W*ASTPS*LSSATPSWQCSSLTAPTCRSRYSSCMCGTFCT*PTS*ASALRMHASFEAGMH 576
             + T S  SS T S  C + +  +C S  SSC   +  T  +  AS+    AS  +   
Sbjct: 132 CRSGTSS-CSSCTTSCSCCTSSCSSCASSCSSCASSSSTTSCSCCASSSSSCASSCSSCA 190

Query: 577 NGCGCAYLTCVEG 615
           + C     +C  G
Sbjct: 191 SSCSSCASSCSSG 203

 Score = 36.6 bits (83), Expect = 0.31
 Identities = 42/145 (28%), Positives = 58/145 (39%)
 Frame = +1

Query: 73  SSVAPSTSTTQRTCRLGSL*CTASTAVCAWAFTCWRMRSPPRPCLRSCTPGGHSHPRWWC 252
           SS A S+STT  +C      C +S++ CA   +C    S    C  SC+ G  S      
Sbjct: 161 SSCASSSSTTSCSC------CASSSSSCA--SSCSSCASSCSSCASSCSSGTTS------ 206

Query: 253 TTTTATRMRTS*TGSRSGSQTHCL*STKHISGVIRDAAKHMTSRATARW*ASTPS*LSSA 432
            +++     +S T S S   T C   T              +S  T+   +ST S  S  
Sbjct: 207 -SSSCASSCSSSTSSSSSGTTSCSSGTTS------------SSCCTSSCSSSTSSSCSGT 253

Query: 433 TPSWQCSSLTAPTCRSRYSSCMCGT 507
           T S  C+S    +C S  SSC   T
Sbjct: 254 TASSSCAS----SCSSCASSCSSST 274

 Score = 33.9 bits (76), Expect = 2.0
 Identities = 40/179 (22%), Positives = 65/179 (35%), Gaps = 6/179 (3%)
 Frame = -2

Query: 537 ACSACRSCTESAAHTRGIAAATCRRSET*ALPAWRCAAQLTGS*GSPASCSARCHMLCS- 361
           +CS+C S   S   +   A ++C    T       C +  + S    +SCS+      S 
Sbjct: 40  SCSSCTSSCSSGTSSCSSATSSCSSGTT------SCTSSTSSSNSCTSSCSSGTSSRSSS 93

Query: 360 -IPYDPGNVFCRSQT----MCL*PTPAPGSGSTHARGSCCRTPPPWVAVATGCTGPQTGP 196
                 G   C S T     C     +  S  +    SC        +  T C+   +  
Sbjct: 94  TTSSSSGTSSCSSGTTSSSSCASSCSSSTSSCSSGTSSCRSGTSSCSSCTTSCSCCTSSC 153

Query: 195 GGTPHSPTCESPGTHRS*GSASQRAQATGSLSRTCTWCNAACQLSACGDPRSSAPGAST 19
                S  C S  +  S  S S  A ++ S + +C+ C ++C  S+C    SS   +S+
Sbjct: 154 SSCASS--CSSCASSSSTTSCSCCASSSSSCASSCSSCASSC--SSCASSCSSGTTSSS 208

 Score = 32.3 bits (72), Expect = 5.9
 Identities = 35/185 (18%), Positives = 67/185 (35%), Gaps = 1/185 (0%)
 Frame = -2

Query: 570 TGLKTSVHSQRACSACRSCTESAAHTRGIAAATCRRSET*ALPAWRCAAQLTGS*GSPAS 391
           +G  +      + S+C S   S+  +     ++CR   +       C    +    S +S
Sbjct: 99  SGTSSCSSGTTSSSSCASSCSSSTSSCSSGTSSCRSGTS---SCSSCTTSCSCCTSSCSS 155

Query: 390 CSARCHMLCSIPYDPGNVFCRSQTM-CL*PTPAPGSGSTHARGSCCRTPPPWVAVATGCT 214
           C++ C    S         C S +  C     +  S  +    SC        + A+ C+
Sbjct: 156 CASSCSSCASSSSTTSCSCCASSSSSCASSCSSCASSCSSCASSCSSGTTSSSSCASSCS 215

Query: 213 GPQTGPGGTPHSPTCESPGTHRS*GSASQRAQATGSLSRTCTWCNAACQLSACGDPRSSA 34
              +    +  + +C S  T  S  ++S  +  + S S T    + A   S+C    SS+
Sbjct: 216 SSTSS--SSSGTTSCSSGTTSSSCCTSSCSSSTSSSCSGTTASSSCASSCSSCASSCSSS 273

Query: 33  PGAST 19
             +S+
Sbjct: 274 TSSSS 278

>gb|EAA42242.1| GLP_49_63778_65430 [Giardia lamblia ATCC 50803]
          Length = 550

 Score = 39.3 bits (90), Expect = 0.048
 Identities = 44/185 (23%), Positives = 68/185 (35%), Gaps = 6/185 (3%)
 Frame = -2

Query: 591 TTAPIVHTGLKTSVHSQRACSACRSCTESAAHTRGIAAATCRRSET*ALPAWRCAAQLTG 412
           TTA  V   + T+  +QRA +   +   ++   R   A++   + + A  A R +     
Sbjct: 27  TTASSVTPTMSTATSAQRASTPTPTRRSASGRARSTTASSVTPTMSTATSAQRASTPTP- 85

Query: 411 S*GSPASCSARCHMLCSIPYDPGNVFCRSQTMCL*PTPAPGSGSTHARGSCCRTPPPWVA 232
              +  S S R     +    P      S      PTP   S S  AR +   +  P ++
Sbjct: 86  ---TRRSASGRARSTTASSVTPTMSTATSAQRASTPTPTRRSASGRARSTTASSVTPTMS 142

Query: 231 VATGC------TGPQTGPGGTPHSPTCESPGTHRS*GSASQRAQATGSLSRTCTWCNAAC 70
            AT        T  +    G   S T  S     S  +++QRA      + T T C  AC
Sbjct: 143 TATSAQRASTPTPTRRSASGRARSTTASSVTPTMSTATSAQRASTP---TPTKTQCVRAC 199

Query: 69  QLSAC 55
           Q+  C
Sbjct: 200 QVDNC 204

>ref|NP_012685.1| Delayed Anaerobic Gene; Dan4p [Saccharomyces cerevisiae]
           gi|1352944|sp|P47179|DAN4_YEAST Cell wall protein DAN4
           precursor gi|1078284|pir||S57180 probable membrane
           protein YJR151c - yeast (Saccharomyces cerevisiae)
           gi|1015903|emb|CAA89684.1| unnamed protein product
           [Saccharomyces cerevisiae]
          Length = 1161

 Score = 39.3 bits (90), Expect = 0.048
 Identities = 46/168 (27%), Positives = 70/168 (41%)
 Frame = +1

Query: 25  STWGTTSRIAARR*LASSVAPSTSTTQRTCRLGSL*CTASTAVCAWAFTCWRMRSPPRPC 204
           ST  TTS         +S  P+TSTT  T    +   T +T+  +   T     + P   
Sbjct: 144 STTSTTSTTPTTS--TTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTS 201

Query: 205 LRSCTPGGHSHPRWWCTTTTATRMRTS*TGSRSGSQTHCL*STKHISGVIRDAAKHMTSR 384
             S TP   +      T+TT+T   TS T + S + T    STK             ++ 
Sbjct: 202 TTSTTPTTSTTSTTPTTSTTSTTPTTSTTPTTSTTSTTSQTSTK-------------STT 248

Query: 385 ATARW*ASTPS*LSSATPSWQCSSLTAPTCRSRYSSCMCGTFCT*PTS 528
            T    ++TP+  +S TP+   +S TAPT  +  ++    T  T PT+
Sbjct: 249 PTTSSTSTTPT--TSTTPTTSTTS-TAPTTSTTSTTSTTSTISTAPTT 293

>ref|XP_352757.1| similar to hypothetical protein [Homo sapiens]
          Length = 2124

 Score = 38.1 bits (87), Expect = 0.11
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -2

Query: 279 THARGSCCRTPPPWVAVATGCTGPQTGPGGTPHSPTCESP 160
           TH    C  +PPP  AV   CTGP + PGG   +  C SP
Sbjct: 558 THLEVPCILSPPPLDAVPMPCTGPHSHPGGA--ADACSSP 595

>ref|NP_298556.1| 1,4-beta-cellobiosidase [Xylella fastidiosa 9a5c]
           gi|11360411|pir||A82704 1,4-beta-cellobiosidase XF1267
           [imported] - Xylella fastidiosa (strain 9a5c)
           gi|9106252|gb|AAF84076.1|AE003960_10
           1,4-beta-cellobiosidase [Xylella fastidiosa 9a5c]
          Length = 683

 Score = 37.7 bits (86), Expect = 0.14
 Identities = 24/95 (25%), Positives = 47/95 (49%)
 Frame = -2

Query: 303 TPAPGSGSTHARGSCCRTPPPWVAVATGCTGPQTGPGGTPHSPTCESPGTHRS*GSASQR 124
           TP PGSGS+ + GS   +     + ++  +G  +  G +  S +  S G+  S GS+S  
Sbjct: 446 TPLPGSGSSSSSGSSSSSGSSSSSGSSSSSGSSSSSGSSSSSGSSSSSGSSSSSGSSSSS 505

Query: 123 AQATGSLSRTCTWCNAACQLSACGDPRSSAPGAST 19
             ++ S S + +  +++   S+     SS+  +S+
Sbjct: 506 GSSSSSGSSSSSGSSSSSGSSSSSGSSSSSGSSSS 540



EST assemble image


clone accession position
1 LC069f09_r AV623862 1 546
2 LC009e02_r AV619520 112 640
3 HC004e06_r AV632146 210 614




Chlamydomonas reinhardtii
Kazusa DNA Research Institute