KCC001820A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001820A_C01 KCC001820A_c01
cttccacggcggcccgcgcggcaaccactggatgtgggacagccgctgcttcaactacgg
caactgggagactatgcgctTCCTGCTGTCCAACGCGCGCTGGTGGATGGACGAGTACAA
GTTCGACGGCTACCGCTTCGACGGCGTGACCTCGATGATGTACCACCACCACGGCCTCAG
CTACACCTTCACCGGCAACTACGGCGAGTACTTCGGCATGAACACGGACGTGGACGCGGT
GGTGTACCTCATGCTGGTCAACAACCTGCTGCACGACCTGTTCCCCAACTGCGTCACCAT
CGGCGAGGATGTGTCGGGCATGCCCGCATTCTGCCGCCCCTGGCAGGAGGGCGGTGTGGG
CTTCGACTACCGCCTGCAGATGGCCATTGCGGACAAGTGGATTGAGGTGATGAAGCTGCA
CGACGACTACGCCTGGAACATGGGCAACCTGGTGCACACACTCACCAACCGCCGGTACGC
TGAGGCGTGCGTGGGCTACGCCGAGTCTCACGACCAGGCGCTGGTGGGCGACAAGACCAT
TGCCTTCTGGCTCATGGACAAGGACATGTACGACTTCATGGCGGTGCCCGGCCACGGCGC
TCAGTCTCTGGTTGTGGACCGCGGCGTGGCGCTGCACAAGATGATCCGCCTGCTCACCAT
TGCGCTGGGCGGCGAGTCCTACCTCAACTTCATGGGCAACGAGTTCGGCCACCCCGAGTG
GATTGACTTCCCTCGTGTGGACAGCTACGACCCCTCCACCGGCAAGTTCGTGCCCGGCAA
CGGCGGCAGCCTGCACCTGTGCCGGCGGCGCTGGGACCTGGCCGACGCCGACTTCCTTAA
GTACAAGTTCCTCAACGCCTTCGACCGCGCCATGTGCCACCTGAACAAGGCGTTCGGCTA
CATGTCGGCCCCCAACACCTACATCAGCCGCAAGGACGAGGGCGACAAGATGATTGTGTT
TGAGCGCGGCGACCTGGTGTTTGTGTTCAACTTCCACCCCGGCCAGTCGTACCAGGACTA
CCGCGTGGGCTGCCGCGAGGCCGGCCCCTACAAGCTGGTGTTGAGCAGCGACGAGGAGGT
CTTCGGCGGCTACCGCAACAACACCAAGGAGAACGACGTCACCTTCCAGACGCAGTCGGG
CAACTTCGACAACCGCCCGCACTCGTTCCAGGTGTACGCGCCCGCCCGCACCTGCGCCGT
GTACGCGCCGGCCGAGTGGGCCGACAAGGACGCCGACCGGAAGCCGCACGGCATCCCCGG
CTTGGGCATCAAGGACCTGGGCCCCTACTTCTCCCGCTAAGCGCTGGCCAGCTGGAAGCG
CCGTGCAGGGTCGGCTTACCAATGACGTGCGGGGTGCGGCCTAAAGCGCCGTGCAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001820A_C01 KCC001820A_c01
         (1376 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAP72267.1| starch branching enzyme IIb [Sorghum bicolor]          583  e-165
dbj|BAA82348.1| branching enzyme 1 [Phaseolus vulgaris]               579  e-164
gb|AAC69753.1| starch branching enzyme IIa [Hordeum vulgare]          577  e-163
dbj|BAB40334.1| starch branching enzyme [Ipomoea batatas]             577  e-163
gb|AAK26821.1| starch branching enzyme IIa [Aegilops tauschii]        576  e-163

>gb|AAP72267.1| starch branching enzyme IIb [Sorghum bicolor]
          Length = 803

 Score =  583 bits (1503), Expect = e-165
 Identities = 274/405 (67%), Positives = 321/405 (78%)
 Frame = +2

Query: 2    FHGGPRGNHWMWDSRCFNYGNWETMRFLLSNARWWMDEYKFDGYRFDGVTSMMYHHHGLS 181
            FH GPRG+HWMWDSR FNYGNWE +RFLLSNARWW++EYKFDG+RFDGVTSMMY HHGL 
Sbjct: 405  FHSGPRGHHWMWDSRLFNYGNWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQ 464

Query: 182  YTFTGNYGEYFGMNTDVDAVVYLMLVNNLLHDLFPNCVTIGEDVSGMPAFCRPWQEGGVG 361
             TFTG++ EYFG  TDVDAVVYLMLVN+L+H L+P  VTIGEDVSGMP+F  P Q+GGVG
Sbjct: 465  VTFTGSFNEYFGFATDVDAVVYLMLVNDLIHGLYPEAVTIGEDVSGMPSFALPVQDGGVG 524

Query: 362  FDYRLQMAIADKWIEVMKLHDDYAWNMGNLVHTLTNRRYAEACVGYAESHDQALVGDKTI 541
            FDYR+ MA+ADKWIE +K  D+ AW MG++VHTLTNRR+ E CV YAESHDQALVGDKTI
Sbjct: 525  FDYRMHMAVADKWIEFLKQSDE-AWKMGDIVHTLTNRRWLEKCVTYAESHDQALVGDKTI 583

Query: 542  AFWLMDKDMYDFMAVPGHGAQSLVVDRGVALHKMIRLLTIALGGESYLNFMGNEFGHPEW 721
            AFWLMDKDMYDFMA+      +  +DRG+ALHKMIRL+T+ LGGE YLNFMGNEFGHPEW
Sbjct: 584  AFWLMDKDMYDFMALDRPATPT--IDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEW 641

Query: 722  IDFPRVDSYDPSTGKFVPGNGGSLHLCRRRWDLADADFLKYKFLNAFDRAMCHLNKAFGY 901
            IDFPR     PS GKF+PGN  S   CRRR+DL DAD+L+Y+ +  FD+AM HL + +G+
Sbjct: 642  IDFPRGPQRLPS-GKFIPGNNNSYDKCRRRFDLGDADYLRYRGMQEFDQAMQHLEQKYGF 700

Query: 902  MSAPNTYISRKDEGDKMIVFERGDLVFVFNFHPGQSYQDYRVGCREAGPYKLVLSSDEEV 1081
            M++ + YISRK E DKMIVFE+GDLVFVFNFH   SY DYR+GCR+ G YK+VL SD  +
Sbjct: 701  MTSDHQYISRKHEEDKMIVFEKGDLVFVFNFHCNNSYFDYRIGCRKPGMYKVVLDSDAGL 760

Query: 1082 FGGYRNNTKENDVTFQTQSGNFDNRPHSFQVYAPARTCAVYAPAE 1216
            FGG+      +     T   + DNRPHSF VY P+RTC VYAP E
Sbjct: 761  FGGF--GRIHHAAEHFTTDCSHDNRPHSFSVYTPSRTCVVYAPVE 803

>dbj|BAA82348.1| branching enzyme 1 [Phaseolus vulgaris]
          Length = 870

 Score =  579 bits (1492), Expect = e-164
 Identities = 271/405 (66%), Positives = 319/405 (77%)
 Frame = +2

Query: 2    FHGGPRGNHWMWDSRCFNYGNWETMRFLLSNARWWMDEYKFDGYRFDGVTSMMYHHHGLS 181
            FH G RG HWMWDSR FNYG+WE +R+LLSNARWW+DEYKFDG+RFDGVTSMMY HHGL 
Sbjct: 447  FHPGSRGYHWMWDSRLFNYGSWEVLRYLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLQ 506

Query: 182  YTFTGNYGEYFGMNTDVDAVVYLMLVNNLLHDLFPNCVTIGEDVSGMPAFCRPWQEGGVG 361
              FTGNY EYFG+ TDVDAVVYLML N+L+H LFP  VTIGEDVSGMP FC P Q+GGVG
Sbjct: 507  VAFTGNYSEYFGLATDVDAVVYLMLANDLIHGLFPEAVTIGEDVSGMPTFCLPTQDGGVG 566

Query: 362  FDYRLQMAIADKWIEVMKLHDDYAWNMGNLVHTLTNRRYAEACVGYAESHDQALVGDKTI 541
            FDYRLQMAIADKWIE++K  D+  W MG++VHTLTNRR+ E CV YAESHDQALVGDKTI
Sbjct: 567  FDYRLQMAIADKWIEILKKQDE-DWKMGDIVHTLTNRRWLEKCVAYAESHDQALVGDKTI 625

Query: 542  AFWLMDKDMYDFMAVPGHGAQSLVVDRGVALHKMIRLLTIALGGESYLNFMGNEFGHPEW 721
            AFWLMDKDMYDFM++         +DRG+ALHKMIRL+T+ LGGE YLNFMGNEFGHPEW
Sbjct: 626  AFWLMDKDMYDFMSLDRPATPR--IDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEW 683

Query: 722  IDFPRVDSYDPSTGKFVPGNGGSLHLCRRRWDLADADFLKYKFLNAFDRAMCHLNKAFGY 901
            IDFPR +   P+ G  +PGN  S   CRRR+DL DAD+L+Y+ +  FDRAM HL + FG+
Sbjct: 684  IDFPRGEQQLPN-GSVIPGNNYSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKFGF 742

Query: 902  MSAPNTYISRKDEGDKMIVFERGDLVFVFNFHPGQSYQDYRVGCREAGPYKLVLSSDEEV 1081
            M+  + YISRK+EGDK+I+FERG+LVFVFNFH   SY DYRVGC   G YK+VL SD+ +
Sbjct: 743  MTTEHQYISRKNEGDKVIIFERGNLVFVFNFHWNNSYSDYRVGCATPGKYKIVLDSDDAL 802

Query: 1082 FGGYRNNTKENDVTFQTQSGNFDNRPHSFQVYAPARTCAVYAPAE 1216
            FGG+  N   +   + T  G +D+RP SF +YAP+RT  VYA A+
Sbjct: 803  FGGF--NRLNHSAEYFTSEGWYDDRPRSFLIYAPSRTAVVYALAD 845

>gb|AAC69753.1| starch branching enzyme IIa [Hordeum vulgare]
          Length = 734

 Score =  577 bits (1488), Expect = e-163
 Identities = 271/405 (66%), Positives = 322/405 (78%)
 Frame = +2

Query: 2    FHGGPRGNHWMWDSRCFNYGNWETMRFLLSNARWWMDEYKFDGYRFDGVTSMMYHHHGLS 181
            FHGGPRG+HWMWDSR FNYG+WE +RFLLSNARWW++EYKFDG+RFDGVTSMMY HHGL 
Sbjct: 336  FHGGPRGHHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQ 395

Query: 182  YTFTGNYGEYFGMNTDVDAVVYLMLVNNLLHDLFPNCVTIGEDVSGMPAFCRPWQEGGVG 361
             TFTGNYGEYFG  TDVDAVVYLMLVN+L+H L+P+ V+IGEDVSGMP FC P  +GGVG
Sbjct: 396  MTFTGNYGEYFGFATDVDAVVYLMLVNDLIHGLYPDAVSIGEDVSGMPTFCIPVPDGGVG 455

Query: 362  FDYRLQMAIADKWIEVMKLHDDYAWNMGNLVHTLTNRRYAEACVGYAESHDQALVGDKTI 541
            FDYRL MA+ADKWIE++K  D+ +W MG++VHTLTNRR+ E CV YAESHDQALVGDKTI
Sbjct: 456  FDYRLHMAVADKWIELLKQSDE-SWKMGDIVHTLTNRRWLEKCVTYAESHDQALVGDKTI 514

Query: 542  AFWLMDKDMYDFMAVPGHGAQSLVVDRGVALHKMIRLLTIALGGESYLNFMGNEFGHPEW 721
            AFWLMDKDMYDFMA+         +DRG+ALHKMIRL+T+ LGGE YLNFMGNEFGHPEW
Sbjct: 515  AFWLMDKDMYDFMALDRPSTPR--IDRGIALHKMIRLVTMGLGGEGYLNFMGNEFGHPEW 572

Query: 722  IDFPRVDSYDPSTGKFVPGNGGSLHLCRRRWDLADADFLKYKFLNAFDRAMCHLNKAFGY 901
            IDFPR     P TGK +PGN  S   CRRR+DL DADFL+Y+ +  FD+AM HL + +G+
Sbjct: 573  IDFPRGPQTLP-TGKVLPGNNNSYDKCRRRFDLGDADFLRYRGMQEFDQAMQHLEEKYGF 631

Query: 902  MSAPNTYISRKDEGDKMIVFERGDLVFVFNFHPGQSYQDYRVGCREAGPYKLVLSSDEEV 1081
            M++ + Y+SRK E DK+I+FERGDLVFVFNFH   S +DYRVGC + G YK+ L SD+ +
Sbjct: 632  MTSEHQYVSRKHEEDKVIIFERGDLVFVFNFHWSNSKKDYRVGCSKPGKYKVALDSDDAL 691

Query: 1082 FGGYRNNTKENDVTFQTQSGNFDNRPHSFQVYAPARTCAVYAPAE 1216
            FGG+  +  ++DV + T     DNRP SF VY P+RT  VYA  E
Sbjct: 692  FGGF--SRLDHDVDYFTTEHPHDNRPRSFSVYTPSRTAVVYALTE 734

>dbj|BAB40334.1| starch branching enzyme [Ipomoea batatas]
          Length = 696

 Score =  577 bits (1486), Expect = e-163
 Identities = 274/409 (66%), Positives = 319/409 (77%)
 Frame = +2

Query: 2    FHGGPRGNHWMWDSRCFNYGNWETMRFLLSNARWWMDEYKFDGYRFDGVTSMMYHHHGLS 181
            FH G RG HWMWDSR FNYGNWE +R+LLSNARWW+DEYKFDG+RFDGVTSMMY HHGLS
Sbjct: 288  FHSGTRGYHWMWDSRLFNYGNWEVLRYLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLS 347

Query: 182  YTFTGNYGEYFGMNTDVDAVVYLMLVNNLLHDLFPNCVTIGEDVSGMPAFCRPWQEGGVG 361
              FTGNY EYFG  TDVDAVVYLMLVN+L+H LFP  +TIGEDVSGMPAFC P ++GGVG
Sbjct: 348  VGFTGNYSEYFGYATDVDAVVYLMLVNDLIHGLFPEAITIGEDVSGMPAFCIPVRDGGVG 407

Query: 362  FDYRLQMAIADKWIEVMKLHDDYAWNMGNLVHTLTNRRYAEACVGYAESHDQALVGDKTI 541
            FDYRL MAI DKWIE++K  D+  W MG +VHTLTNRR+ E CV YAESHDQALVGDKTI
Sbjct: 408  FDYRLHMAIPDKWIEILKRRDE-DWQMGEIVHTLTNRRWLEKCVSYAESHDQALVGDKTI 466

Query: 542  AFWLMDKDMYDFMAVPGHGAQSLVVDRGVALHKMIRLLTIALGGESYLNFMGNEFGHPEW 721
            AFWLMDKDMYDFMA+        V+DRG+ALHKMIRL+T+ LGGE YLNFMGNEFGHPEW
Sbjct: 467  AFWLMDKDMYDFMALDRPATP--VIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEW 524

Query: 722  IDFPRVDSYDPSTGKFVPGNGGSLHLCRRRWDLADADFLKYKFLNAFDRAMCHLNKAFGY 901
            IDFPR +   P  G  +PGN  S   CRRR+DL DAD+L+Y+ +  FD+AM HL + +G+
Sbjct: 525  IDFPRGEQRLPD-GSVLPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDQAMHHLEEKYGF 583

Query: 902  MSAPNTYISRKDEGDKMIVFERGDLVFVFNFHPGQSYQDYRVGCREAGPYKLVLSSDEEV 1081
            M+A + YISR+DEGD++I+FERGDLVFVFNFH   SY DYRVGC + G YK+ L SD  +
Sbjct: 584  MTAEHQYISRQDEGDRVIIFERGDLVFVFNFHWTNSYSDYRVGCLKPGKYKVALDSDSPL 643

Query: 1082 FGGYRNNTKENDVTFQTQSGNFDNRPHSFQVYAPARTCAVYAPAEWADK 1228
            FGG+     + D  F T  G  D+RP SF VYAP+RT  VYA A+  D+
Sbjct: 644  FGGF--GRVQPDAEFFTFEGYHDDRPRSFMVYAPSRTAVVYALAKEEDE 690

>gb|AAK26821.1| starch branching enzyme IIa [Aegilops tauschii]
          Length = 819

 Score =  576 bits (1484), Expect = e-163
 Identities = 270/405 (66%), Positives = 323/405 (79%)
 Frame = +2

Query: 2    FHGGPRGNHWMWDSRCFNYGNWETMRFLLSNARWWMDEYKFDGYRFDGVTSMMYHHHGLS 181
            FHGGPRG+HWMWDSR FNYG+WE +RFLLSNARWW++EYKFDG+RFDGVTSMMY HHGL 
Sbjct: 421  FHGGPRGHHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQ 480

Query: 182  YTFTGNYGEYFGMNTDVDAVVYLMLVNNLLHDLFPNCVTIGEDVSGMPAFCRPWQEGGVG 361
             TFTGNYGEYFG  TDVDAVVYLMLVN+L+H L+P+ V+IGEDVSGMP FC P  +GGVG
Sbjct: 481  MTFTGNYGEYFGFATDVDAVVYLMLVNDLIHGLYPDAVSIGEDVSGMPTFCIPVPDGGVG 540

Query: 362  FDYRLQMAIADKWIEVMKLHDDYAWNMGNLVHTLTNRRYAEACVGYAESHDQALVGDKTI 541
            FDYRL MA+ADKWIE++K  D+ +W MG++VHTLTNRR+ E CV YAESHDQALVGDKTI
Sbjct: 541  FDYRLHMAVADKWIELLKQSDE-SWKMGDIVHTLTNRRWLEKCVTYAESHDQALVGDKTI 599

Query: 542  AFWLMDKDMYDFMAVPGHGAQSLVVDRGVALHKMIRLLTIALGGESYLNFMGNEFGHPEW 721
            AFWLMDKDMYDFMA+      +L +DRG+ALHKMIRL+T+ LGGE YLNFMGNEFGHPEW
Sbjct: 600  AFWLMDKDMYDFMAL--DRPSTLRIDRGIALHKMIRLVTMGLGGEGYLNFMGNEFGHPEW 657

Query: 722  IDFPRVDSYDPSTGKFVPGNGGSLHLCRRRWDLADADFLKYKFLNAFDRAMCHLNKAFGY 901
            IDFPR     P TGK +PGN  S   CRRR+DL DADFL+Y+ +  FD+AM HL + +G+
Sbjct: 658  IDFPRGPQTLP-TGKVLPGNNNSYDKCRRRFDLGDADFLRYRGMQEFDQAMQHLEEKYGF 716

Query: 902  MSAPNTYISRKDEGDKMIVFERGDLVFVFNFHPGQSYQDYRVGCREAGPYKLVLSSDEEV 1081
            M++ + Y+SRK E DK+I+ +RGDLVFVFNFH   S+ DYRVGC + G YK+ L SD+ +
Sbjct: 717  MTSEHQYVSRKHEEDKVIILKRGDLVFVFNFHWSNSFFDYRVGCSKPGKYKVALDSDDAL 776

Query: 1082 FGGYRNNTKENDVTFQTQSGNFDNRPHSFQVYAPARTCAVYAPAE 1216
            FGG+  +  ++DV + T     DNRP SF VY P+RT  VYA  E
Sbjct: 777  FGGF--SRLDHDVDYFTTEHPHDNRPRSFSVYTPSRTAVVYALTE 819



EST assemble image


clone accession position
1 MXL016e10_r BP093983 1 523
2 HCL014h09_r AV640361 95 336
3 MX252e05_r BP092317 177 619
4 LCL075f12_r AV630226 248 582
5 HCL045e11_r AV642096 399 804
6 HC010h10_r AV632654 449 934
7 HC043c12_r AV635207 828 1357
8 HC004d11_r AV632140 984 1377




Chlamydomonas reinhardtii
Kazusa DNA Research Institute