KCC001801A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001801A_C01 KCC001801A_c01
gaacgttatcatctggggcaaccacagctccacgcagtaccccgacgtcaaccacggcac
agtgggcggcaagcccatccGCTCCGCAGTTAACGACGACACCTGGCTCAACGGCGACTT
CATCACCACCGTGCAGCAGCGCGGCGCGGCGATCATCAAGGCTCGCGGCCTGTCGTCGGC
GCTGTCCGCCGCCAACGCCGTGTGCAACCACGTGCGCGACTGGGTCCGCGGCACGCCCGG
CGGCAGCTGGACGTCCATGGGCGTGGTTAGTGACGGCTCCTACGGCGTGCAGCGCGGCCT
GGTGTACTCCTACCCCGTCACCTGCGCGGGCGGCAAGTGGAAGGTGGTTCAGGGTCTACC
CATCGACGGCCCCTCGCGCGAGCGCCTGCGTGTGACCGAGGCGGAGCTGGTGGAGGAGCG
CGACCTGGCGCTGCAGTGTCTGGCGGAGAAGAAGTAGAGGGCTGAGTAGGAGTCAGAGGA
GGGCAGCGAGGGCAAGGCGGGGAAGGCGTCAGAAGGCATGGGGCCACAGCGCATGGTGAA
GCGCTGAGCAGCCGGGCGCTCCCTGGTGCCGCGAGAGAGCCAGCTTGGGCCGCTGGGGAA
GTGACCGGGTGTTAGGATGAGCTAGCATTGACACCGACAGAACGCGGGTGATGAGCGCGC
TGGAGTTGCAAGGTTGAGTCGTGGACGTTAATAGTCTAATGGACGATTGATGCCTGGGGT
CGGGTGTGCCGGGTTGGACAGGCGGGCTCGCGTGGATGCGGATAGGTAGCACGGAGTAGA
GACATTGCTGTGCCGGGGCAGGGCCGGGGCTACAAGAGTTGATTGTCGTTAGACACGGTC
ATGGCGACAGGTGACTCCGcagctactgccgatttcttagcataatgcatacaacgcgca
gaaagggctcgtatgcaacacttgaaagatttatcatcg


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001801A_C01 KCC001801A_c01
         (939 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAC80841.1| cytosolic malate dehydrogenase [Chlamydomonas re...   313  3e-84
sp|Q08062|MDHC_MAIZE Malate dehydrogenase, cytoplasmic gi|743117...   219  5e-56
sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic gi|743118...   217  2e-55
sp|O24047|MDHC_MESCR Malate dehydrogenase, cytoplasmic gi|743116...   217  2e-55
emb|CAC10208.1| cytosolic malate dehydrogenase [Cicer arietinum]      216  3e-55

>emb|CAC80841.1| cytosolic malate dehydrogenase [Chlamydomonas reinhardtii]
          Length = 252

 Score =  313 bits (802), Expect = 3e-84
 Identities = 151/151 (100%), Positives = 151/151 (100%)
 Frame = +2

Query: 2   NVIIWGNHSSTQYPDVNHGTVGGKPIRSAVNDDTWLNGDFITTVQQRGAAIIKARGLSSA 181
           NVIIWGNHSSTQYPDVNHGTVGGKPIRSAVNDDTWLNGDFITTVQQRGAAIIKARGLSSA
Sbjct: 102 NVIIWGNHSSTQYPDVNHGTVGGKPIRSAVNDDTWLNGDFITTVQQRGAAIIKARGLSSA 161

Query: 182 LSAANAVCNHVRDWVRGTPGGSWTSMGVVSDGSYGVQRGLVYSYPVTCAGGKWKVVQGLP 361
           LSAANAVCNHVRDWVRGTPGGSWTSMGVVSDGSYGVQRGLVYSYPVTCAGGKWKVVQGLP
Sbjct: 162 LSAANAVCNHVRDWVRGTPGGSWTSMGVVSDGSYGVQRGLVYSYPVTCAGGKWKVVQGLP 221

Query: 362 IDGPSRERLRVTEAELVEERDLALQCLAEKK 454
           IDGPSRERLRVTEAELVEERDLALQCLAEKK
Sbjct: 222 IDGPSRERLRVTEAELVEERDLALQCLAEKK 252

>sp|Q08062|MDHC_MAIZE Malate dehydrogenase, cytoplasmic gi|7431171|pir||T02935 malate
           dehydrogenase (EC 1.1.1.-), cytosolic - maize
           gi|2286153|gb|AAB64290.1| cytoplasmic malate
           dehydrogenase [Zea mays]
          Length = 332

 Score =  219 bits (558), Expect = 5e-56
 Identities = 104/151 (68%), Positives = 123/151 (80%), Gaps = 4/151 (2%)
 Frame = +2

Query: 2   NVIIWGNHSSTQYPDVNHGTV----GGKPIRSAVNDDTWLNGDFITTVQQRGAAIIKARG 169
           NVIIWGNHSS+QYPDVNH TV    G KP+R  V+DD WLNG+FITTVQQRGAAIIKAR 
Sbjct: 181 NVIIWGNHSSSQYPDVNHATVKTSTGEKPVRELVSDDEWLNGEFITTVQQRGAAIIKARK 240

Query: 170 LSSALSAANAVCNHVRDWVRGTPGGSWTSMGVVSDGSYGVQRGLVYSYPVTCAGGKWKVV 349
            SSALSAA++ C+H+RDWV GTP G++ SMGV SDGSYGV  GL+YS+PVTC+GG+WK+V
Sbjct: 241 FSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPSGLIYSFPVTCSGGEWKIV 300

Query: 350 QGLPIDGPSRERLRVTEAELVEERDLALQCL 442
           QGLPID  SR+++  T  EL EE+ LA  CL
Sbjct: 301 QGLPIDEFSRKKMDATAQELTEEKTLAYSCL 331

>sp|O48905|MDHC_MEDSA Malate dehydrogenase, cytoplasmic gi|7431180|pir||T09291 malate
           dehydrogenase (EC 1.1.1.37), cytosolic - alfalfa
           gi|2827082|gb|AAB99756.1| malate dehydrogenase [Medicago
           sativa]
          Length = 332

 Score =  217 bits (553), Expect = 2e-55
 Identities = 105/152 (69%), Positives = 124/152 (81%), Gaps = 4/152 (2%)
 Frame = +2

Query: 2   NVIIWGNHSSTQYPDVNHGTV----GGKPIRSAVNDDTWLNGDFITTVQQRGAAIIKARG 169
           NVIIWGNHSSTQYPDVNH TV    G KP+R  V+DD WLNG+FI+TVQQRGAAIIKAR 
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVNTPAGEKPVRQLVSDDAWLNGEFISTVQQRGAAIIKARK 240

Query: 170 LSSALSAANAVCNHVRDWVRGTPGGSWTSMGVVSDGSYGVQRGLVYSYPVTCAGGKWKVV 349
           LSSALSAA+A C+H+RDWV GTP G++ SMGV SDGSY V  GL+YS+PVTCA G+WK+V
Sbjct: 241 LSSALSAASAACDHIRDWVLGTPQGTFVSMGVYSDGSYNVPSGLIYSFPVTCANGEWKIV 300

Query: 350 QGLPIDGPSRERLRVTEAELVEERDLALQCLA 445
           QGL ID  SR++L +T  EL EE++LA  CL+
Sbjct: 301 QGLSIDEFSRKKLDLTAEELTEEKNLAHSCLS 332

>sp|O24047|MDHC_MESCR Malate dehydrogenase, cytoplasmic gi|7431164|pir||T12433 malate
           dehydrogenase (EC 1.1.1.37), cytosolic - common ice
           plant gi|1524121|emb|CAA65384.1| malate dehydrogenase
           [Mesembryanthemum crystallinum]
          Length = 332

 Score =  217 bits (553), Expect = 2e-55
 Identities = 103/151 (68%), Positives = 119/151 (78%), Gaps = 4/151 (2%)
 Frame = +2

Query: 2   NVIIWGNHSSTQYPDVNHGTVG----GKPIRSAVNDDTWLNGDFITTVQQRGAAIIKARG 169
           NVIIWGNHSSTQYPDVNH TV      KP+R  V DD WLNG+FITTVQQRGAAIIKAR 
Sbjct: 181 NVIIWGNHSSTQYPDVNHATVKTQGVDKPVRELVADDAWLNGEFITTVQQRGAAIIKARK 240

Query: 170 LSSALSAANAVCNHVRDWVRGTPGGSWTSMGVVSDGSYGVQRGLVYSYPVTCAGGKWKVV 349
           LSSALSAA++ C+H+ DWV GTP G+W SMGV SDGSY V  G++YS+PVTC  G+W +V
Sbjct: 241 LSSALSAASSACDHIHDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKNGEWTIV 300

Query: 350 QGLPIDGPSRERLRVTEAELVEERDLALQCL 442
           QGLPID  SR+++  T AELVEE+ LA  CL
Sbjct: 301 QGLPIDDDSRKKMDATAAELVEEKTLAYSCL 331

>emb|CAC10208.1| cytosolic malate dehydrogenase [Cicer arietinum]
          Length = 332

 Score =  216 bits (551), Expect = 3e-55
 Identities = 105/152 (69%), Positives = 123/152 (80%), Gaps = 4/152 (2%)
 Frame = +2

Query: 2   NVIIWGNHSSTQYPDVNHGTV----GGKPIRSAVNDDTWLNGDFITTVQQRGAAIIKARG 169
           NVIIWGNHSSTQYPDV H TV    G KP+R  V+DD WLNG+FI TVQQRGAAIIKAR 
Sbjct: 181 NVIIWGNHSSTQYPDVTHATVKTPAGEKPVRELVSDDAWLNGEFIPTVQQRGAAIIKARK 240

Query: 170 LSSALSAANAVCNHVRDWVRGTPGGSWTSMGVVSDGSYGVQRGLVYSYPVTCAGGKWKVV 349
           LSSALSAA+A C+H+RDWV GTP G++ SMGV SDGSY V  GL+YS+PVTCAGG+WK+V
Sbjct: 241 LSSALSAASAACDHIRDWVLGTPEGTFVSMGVYSDGSYNVPAGLIYSFPVTCAGGEWKIV 300

Query: 350 QGLPIDGPSRERLRVTEAELVEERDLALQCLA 445
           QGL ID  SR++L +T  EL EE++LA  CL+
Sbjct: 301 QGLSIDEFSRKKLDLTAEELSEEKNLAYSCLS 332



EST assemble image


clone accession position
1 HC002b03_r AV631952 1 538
2 MXL051e03_r BP096034 356 739
3 MXL057e12_r BP096365 567 939




Chlamydomonas reinhardtii
Kazusa DNA Research Institute