KCC001799A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001799A_C01 KCC001799A_c01
CTAGAACGCACCAGATCTCTTTTTCTGCAAGGGAAGAGGCCAACTTGTGCAGCATGCAGC
TAAACCTCGGCCGTCCCAGCACCCGCGTGGTGGCTGGCCACCGCCATGCCACTCCTGTGG
TGACTGCTTCTCGCTTCAGCAGCCGCAGGTCGTCGGTCGCGGCCAAGGCCGTTCAGACCC
CATCCAATGCGACCGCCGCGAGCGAGCTGCAGAGCCTTGGCCGCCTTTCCACCATTGTCC
CCGACACTCTAGCCATGGAGACTCTGACCCCCGGCGCCAAGCTGGCTGCGGGGACTGTGT
CAGCAAGCGTCTTACGGTCCGTCCTCGTTTCAGAGTCGCTGGGCCTGAAGCCGTATGAGA
ACGCCATCGTGGCCGCCATGGCCGACGGCAAGAACAGCAACAGCCCCCTGGCCGCCGCCG
CGGACCCGCTGGACCGGGCGCTGGTCAACGTGGGCGCCATGCTGTGCGACGTGGTGTGGG
GCCGCGTGGAGACCATCGTGGACCCCAACCTCGCCAACGACCAGTGCCGTGGTGACGGAG
AAGGTGCGGCTGCTGGCGGCGCTGTACGCGGCGCTGCGGGTGCCGCGCGACCGCCTCATC
TTCGGCCTGCCCGCCACCTGGGCCGCCACACAGGCAGCCAAGACTCTGGAGGCCGAGGGC
ATCGCCACCAGCCTGTACATGGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001799A_C01 KCC001799A_c01
         (684 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC55687.1| putative transaldolase [Oryza sativa (japonica c...    58  2e-14
gb|AAL65638.1| transaldolase-like protein [Arabidopsis lyrata]         50  3e-14
ref|NP_563900.1| expressed protein [Arabidopsis thaliana] gi|254...    50  4e-14
gb|AAM66063.1| transaldolase ToTAL2 [Arabidopsis thaliana]             50  4e-14
gb|AAL65622.1| transaldolase-like protein [Arabidopsis thaliana]       50  4e-14

>dbj|BAC55687.1| putative transaldolase [Oryza sativa (japonica cultivar-group)]
          Length = 399

 Score = 57.8 bits (138), Expect(2) = 2e-14
 Identities = 56/168 (33%), Positives = 82/168 (48%), Gaps = 7/168 (4%)
 Frame = +3

Query: 39  ANLCSMQLNLGRPSTRVVAGHRHATPVVTASRFSSRRSSVAAKAV---QTPSNAT--AAS 203
           ++L    L +GR S+      R   PV     FS RR  +AA+       PS++     +
Sbjct: 12  SSLLPASLQVGRWSSSAAMSAR---PVA----FSLRRPVLAARVAAGGNAPSSSVDEVVT 64

Query: 204 ELQSLGRLSTIVPDTLAMETLTPGAKLAAGTVSASVLRSVLVSESLGLKPYENAIVAAMA 383
           EL ++   S IVPDT+  +     A  AA TVS+S+L  +     L    +++AI  A+A
Sbjct: 65  ELDAVASFSEIVPDTVVFDDFEKFAPTAA-TVSSSLLLGIA---GLPDTKFKSAIDTALA 120

Query: 384 DGK--NSNSPLAAAADPLDRALVNVGAMLCDVVWGRVETIVDPNLAND 521
           DG+      P    +  L +AL NVGA +  +V GRV T +D  LA D
Sbjct: 121 DGECNTMEKPEDRMSCFLTKALANVGAEMAHLVPGRVSTEIDARLAYD 168

 Score = 43.1 bits (100), Expect(2) = 2e-14
 Identities = 21/51 (41%), Positives = 32/51 (62%)
 Frame = +1

Query: 532 VTEKVRLLAALYAALRVPRDRLIFGLPATWAATQAAKTLEAEGIATSLYMV 684
           + ++V  L  LY+   V  +RL+F +PATW   +A++ LE+EGI T L  V
Sbjct: 172 IIQRVHELLKLYSDHDVLSERLLFKIPATWQGIEASRLLESEGIQTHLTFV 222

>gb|AAL65638.1| transaldolase-like protein [Arabidopsis lyrata]
          Length = 375

 Score = 50.4 bits (119), Expect(2) = 3e-14
 Identities = 24/51 (47%), Positives = 32/51 (62%)
 Frame = +1

Query: 532 VTEKVRLLAALYAALRVPRDRLIFGLPATWAATQAAKTLEAEGIATSLYMV 684
           +  KV  L  LY  + VP DRL+F +PATW   +AA+ LE+EGI T +  V
Sbjct: 177 IIRKVHDLLRLYNEIDVPHDRLLFKIPATWQGIEAARLLESEGIQTHMTFV 227

 Score = 50.1 bits (118), Expect(2) = 3e-14
 Identities = 52/159 (32%), Positives = 79/159 (48%), Gaps = 13/159 (8%)
 Frame = +3

Query: 84  RVVAGHRHATPVVTASRFSSRRSS----VAAKAVQTPSNATAAS----ELQSLGRLSTIV 239
           + +A    ATP+  A  FS RRS      +A +  +PS+++  +    EL ++   S IV
Sbjct: 23  KTLAAGFSATPL-PAVNFSIRRSIPRILASASSSSSPSSSSLEAGENNELNAVSAFSEIV 81

Query: 240 PDTLAMETLTPGAKLAAGTVSASVLRSVLVSESLGLKPYENAIVAAMADG-----KNSNS 404
           PDT+  +        AA TVS+S+L  +     L    + NA+  A+AD      + + S
Sbjct: 82  PDTVVFDDFERFPPTAA-TVSSSLLLGIC---GLPDTIFRNAVDMALADSSCAGLETTES 137

Query: 405 PLAAAADPLDRALVNVGAMLCDVVWGRVETIVDPNLAND 521
            L+      ++A+VNVG  L  +V GRV T VD  LA D
Sbjct: 138 RLSCF---FNKAIVNVGGDLVKLVPGRVSTEVDARLAYD 173

>ref|NP_563900.1| expressed protein [Arabidopsis thaliana] gi|25402713|pir||D86257
           hypothetical protein [imported] - Arabidopsis thaliana
           gi|10086511|gb|AAG12571.1|AC022522_4 Similar to
           transaldolase [Arabidopsis thaliana]
           gi|25083140|gb|AAN72047.1| expressed protein
           [Arabidopsis thaliana] gi|30725648|gb|AAP37846.1|
           At1g12230 [Arabidopsis thaliana]
          Length = 405

 Score = 50.4 bits (119), Expect(2) = 4e-14
 Identities = 24/51 (47%), Positives = 32/51 (62%)
 Frame = +1

Query: 532 VTEKVRLLAALYAALRVPRDRLIFGLPATWAATQAAKTLEAEGIATSLYMV 684
           +  KV  L  LY  + VP DRL+F +PATW   +AA+ LE+EGI T +  V
Sbjct: 177 IIRKVHDLLRLYNEIDVPHDRLLFKIPATWQGIEAARLLESEGIQTHMTFV 227

 Score = 49.3 bits (116), Expect(2) = 4e-14
 Identities = 46/145 (31%), Positives = 72/145 (48%), Gaps = 5/145 (3%)
 Frame = +3

Query: 102 RHATPVVTASRFSSRRSSVAAKAVQTPSNATAASELQSLGRLSTIVPDTLAMETLTPGAK 281
           R + P + AS  SS  SS A+ +++   N    +EL ++   S IVPDT+  +       
Sbjct: 42  RRSIPRILASASSS--SSPASSSLEAGEN----NELNAVSAFSEIVPDTVVFDDFERFPP 95

Query: 282 LAAGTVSASVLRSVLVSESLGLKPYENAIVAAMADG-----KNSNSPLAAAADPLDRALV 446
            AA   SA +L    + +++    + NA+  A+AD      + + S L+      ++A+V
Sbjct: 96  TAATVSSALLLGICGLPDTI----FRNAVDMALADSSCAGLETTESRLSCF---FNKAIV 148

Query: 447 NVGAMLCDVVWGRVETIVDPNLAND 521
           NVG  L  +V GRV T VD  LA D
Sbjct: 149 NVGGDLVKLVPGRVSTEVDARLAYD 173

>gb|AAM66063.1| transaldolase ToTAL2 [Arabidopsis thaliana]
          Length = 405

 Score = 50.4 bits (119), Expect(2) = 4e-14
 Identities = 24/51 (47%), Positives = 32/51 (62%)
 Frame = +1

Query: 532 VTEKVRLLAALYAALRVPRDRLIFGLPATWAATQAAKTLEAEGIATSLYMV 684
           +  KV  L  LY  + VP DRL+F +PATW   +AA+ LE+EGI T +  V
Sbjct: 177 IIRKVHDLLRLYNEIDVPHDRLLFKIPATWQGIEAARLLESEGIQTHMTFV 227

 Score = 49.3 bits (116), Expect(2) = 4e-14
 Identities = 46/145 (31%), Positives = 72/145 (48%), Gaps = 5/145 (3%)
 Frame = +3

Query: 102 RHATPVVTASRFSSRRSSVAAKAVQTPSNATAASELQSLGRLSTIVPDTLAMETLTPGAK 281
           R + P + AS  SS  SS A+ +++   N    +EL ++   S IVPDT+  +       
Sbjct: 42  RRSIPRILASASSS--SSPASSSLEAGEN----NELNAVSAFSEIVPDTVVFDDFERFPP 95

Query: 282 LAAGTVSASVLRSVLVSESLGLKPYENAIVAAMADG-----KNSNSPLAAAADPLDRALV 446
            AA   SA +L    + +++    + NA+  A+AD      + + S L+      ++A+V
Sbjct: 96  TAATVSSALLLGICGLPDTI----FRNAVDMALADSSCAGLETTESRLSCF---FNKAIV 148

Query: 447 NVGAMLCDVVWGRVETIVDPNLAND 521
           NVG  L  +V GRV T VD  LA D
Sbjct: 149 NVGGDLVKLVPGRVSTEVDARLAYD 173

>gb|AAL65622.1| transaldolase-like protein [Arabidopsis thaliana]
          Length = 375

 Score = 50.4 bits (119), Expect(2) = 4e-14
 Identities = 24/51 (47%), Positives = 32/51 (62%)
 Frame = +1

Query: 532 VTEKVRLLAALYAALRVPRDRLIFGLPATWAATQAAKTLEAEGIATSLYMV 684
           +  KV  L  LY  + VP DRL+F +PATW   +AA+ LE+EGI T +  V
Sbjct: 177 IIRKVHDLLRLYNEIDVPHDRLLFKIPATWQGIEAARLLESEGIQTHMTFV 227

 Score = 49.3 bits (116), Expect(2) = 4e-14
 Identities = 46/145 (31%), Positives = 72/145 (48%), Gaps = 5/145 (3%)
 Frame = +3

Query: 102 RHATPVVTASRFSSRRSSVAAKAVQTPSNATAASELQSLGRLSTIVPDTLAMETLTPGAK 281
           R + P + AS  SS  SS A+ +++   N    +EL ++   S IVPDT+  +       
Sbjct: 42  RRSIPRILASASSS--SSPASSSLEAGEN----NELNAVSAFSEIVPDTVVFDDFERFPP 95

Query: 282 LAAGTVSASVLRSVLVSESLGLKPYENAIVAAMADG-----KNSNSPLAAAADPLDRALV 446
            AA   SA +L    + +++    + NA+  A+AD      + + S L+      ++A+V
Sbjct: 96  TAATVSSALLLGICGLPDTI----FRNAVDMALADSSCAGLETTESRLSCF---FNKAIV 148

Query: 447 NVGAMLCDVVWGRVETIVDPNLAND 521
           NVG  L  +V GRV T VD  LA D
Sbjct: 149 NVGGDLVKLVPGRVSTEVDARLAYD 173



EST assemble image


clone accession position
1 MXL084b02_r BP097955 1 480
2 HC001g03_r AV631922 1 476
3 MXL060e06_r BP096546 1 311
4 MX240c04_r BP091517 9 463
5 MX259g06_r BP092832 101 557
6 LC050g12_r AV622527 204 692




Chlamydomonas reinhardtii
Kazusa DNA Research Institute