KCC001790A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001790A_C01 KCC001790A_c01
gcaccagatatgcccttgaaacaCCCGCTTGTAGCTCCTACTGAAGCTATTAGAGTGAAA
CAGAGAGCGAAACCAACCTCGCATATTGCAGTCCGTCCTCGCTGCCCCTCGTCCAAACAA
GCATATCATTGTTAACTCCCATTACGGCTGCAGTTCTTGTGGACCATAGGCTCCTCTAGC
CGGCTGTAGTTTGCAAATCTCCTAAGCAGGAAGCCCTGATAGCTTGGAGCTTGGAGTAAA
AGATGTTTGACAAGTTGAAACAGGCGGTGGGGCTCCAGGAGCAAGAGGAGAAAGGGCTGG
TCGGGCAAATTGACGAGGCGATGACCCTGAGCTGGAAGAACAGGCTGATTGGCTTCGGGT
GCTGCTTCGCATTCGGCGTCCTCCTAACGTT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001790A_C01 KCC001790A_c01
         (391 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_649241.1| CG5104-PB [Drosophila melanogaster] gi|21392208...    45  3e-04
ref|XP_351306.1| similar to hypothetical protein [Homo sapiens] ...    45  3e-04
ref|NP_663487.1| RIKEN cDNA 2010005O13; cDNA sequence, clone 3-7...    44  5e-04
ref|XP_341145.1| similar to RIKEN cDNA 2010005O13 [Rattus norveg...    43  0.001
gb|AAH53226.1| Unknown (protein for MGC:64053) [Danio rerio]           40  0.010

>ref|NP_649241.1| CG5104-PB [Drosophila melanogaster] gi|21392208|gb|AAM48458.1|
           RH26504p [Drosophila melanogaster]
           gi|23094175|gb|AAN12138.1| CG5104-PB [Drosophila
           melanogaster]
          Length = 163

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
 Frame = +3

Query: 249 DKLKQAVGLQE---QEEKGLVGQIDEAMTLSWKNRLIGFGCCFAFGVLLT 389
           DKL++ +   E   +EE  ++ QI++  TLSW  R+ GF  CFA G+LL+
Sbjct: 2   DKLRRVLSGDEPTPEEESSIITQINDMSTLSWSTRIKGFVICFALGILLS 51

>ref|XP_351306.1| similar to hypothetical protein [Homo sapiens]
           gi|4200249|emb|CAA22897.1| hypothetical protein [Homo
           sapiens]
          Length = 160

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 19/45 (42%), Positives = 30/45 (66%)
 Frame = +3

Query: 249 DKLKQAVGLQEQEEKGLVGQIDEAMTLSWKNRLIGFGCCFAFGVL 383
           DKLK+ +  Q+ E++  + ++ EA +LSW  R+ GF  CFA G+L
Sbjct: 2   DKLKKVLSGQDTEDRSGLSEVVEASSLSWSTRIKGFIACFAIGIL 46

>ref|NP_663487.1| RIKEN cDNA 2010005O13; cDNA sequence, clone 3-72 [Mus musculus]
           gi|17028458|gb|AAH17549.1| RIKEN cDNA 2010005O13 [Mus
           musculus] gi|26331516|dbj|BAC29488.1| unnamed protein
           product [Mus musculus]
          Length = 159

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 19/45 (42%), Positives = 30/45 (66%)
 Frame = +3

Query: 249 DKLKQAVGLQEQEEKGLVGQIDEAMTLSWKNRLIGFGCCFAFGVL 383
           DKLK+ +  Q+ E++  + ++ EA +LSW  R+ GF  CFA G+L
Sbjct: 2   DKLKKVLSGQDTEDRSGLSEVVEASSLSWGTRIKGFIACFALGIL 46

>ref|XP_341145.1| similar to RIKEN cDNA 2010005O13 [Rattus norvegicus]
          Length = 135

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 18/45 (40%), Positives = 30/45 (66%)
 Frame = +3

Query: 249 DKLKQAVGLQEQEEKGLVGQIDEAMTLSWKNRLIGFGCCFAFGVL 383
           DKLK+ +  Q+ E++  + ++ E+ +LSW  R+ GF  CFA G+L
Sbjct: 2   DKLKKVLSGQDTEDRSGLSEVVESSSLSWSTRIKGFIVCFALGIL 46

>gb|AAH53226.1| Unknown (protein for MGC:64053) [Danio rerio]
          Length = 161

 Score = 39.7 bits (91), Expect = 0.010
 Identities = 21/46 (45%), Positives = 29/46 (62%), Gaps = 1/46 (2%)
 Frame = +3

Query: 249 DKLKQAV-GLQEQEEKGLVGQIDEAMTLSWKNRLIGFGCCFAFGVL 383
           DKL++ + G +E EE GL  Q+ +  TLS+  RL  F  CFA G+L
Sbjct: 2   DKLRRVLSGREENEEMGLTAQVLDGSTLSFSTRLKWFIICFAAGIL 47



EST assemble image


clone accession position
1 CM100c11_r AV392864 1 344
2 MXL073g10_r BP097325 24 391




Chlamydomonas reinhardtii
Kazusa DNA Research Institute