KCC001787A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001787A_C01 KCC001787A_c01
ctgcaATATCCCATCATACCTCTTAACACCTTTTATCCTGCGGGGGCCCCGAAGAGCGCC
CGTGTCCACGTCGGCACAACTCAAGCTGCTTTAAGCGCACCGCCTGGAATTATCGTCATT
GCTGTATTATCCTACTGTGCTGACTTATTAGTGTAGCGAATTGTGGAGAGCATTCGAAGC
CTGGCTGGCTTGGGCCGGCTCGACCGGCTATTCCGACGTTGGGAACGCAGCCGACGCCCT
TCGGGGCTGCAGACATAAGACATGGGAAACACCACATCCCACAAGCACGAGACTCCGGGG
GGCACGGAGCACGAACACTATGCGCGGCACGCGTCGCCGCCGCTTAGCCCCGGCTCGCCG
TTGACCTACAGCCCGCAAATACCCATGGAGCCGATCGCGCGCGCTGATGAGCTGACAGCC
GCCAACCGCAACGCACCTGAATTTCACGGGGTGGCAGGGTGGCCAGCGCAGCCAAAGCTG
ATGCCAGTGGTCATCGTGTGGAGCCACGGTGGGAGCCACGTGGAGGTGGAGGGCTCGTTT
GACAACTGGAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001787A_C01 KCC001787A_c01
         (551 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO61676.1| AKIN beta1 [Medicago truncatula]                        58  1e-07
emb|CAB64719.1| AKIN beta2 [Arabidopsis thaliana] gi|13430672|gb...    57  2e-07
ref|NP_193369.1| kinase like protein [Arabidopsis thaliana] gi|7...    57  2e-07
ref|NP_197615.1| AMPKBI (5'-AMP-activated protein kinase, beta s...    55  8e-07
gb|AAO89082.1| SNF1 kinase complex anchoring protein [Lycopersic...    54  1e-06

>gb|AAO61676.1| AKIN beta1 [Medicago truncatula]
          Length = 276

 Score = 57.8 bits (138), Expect = 1e-07
 Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
 Frame = +1

Query: 334 SPPLSPG---SPLTYSPQIPMEPIARADELTAANR---NAPEFHGVAGWPAQPKLMPVVI 495
           SPP SP    SP+ + PQ+P+ P+ R +     N+   N P  HG+    A  + +PV+I
Sbjct: 40  SPPQSPRRSRSPILFGPQVPLAPLQRGNGPPFLNQMWQNEP--HGIVN-QAPEQGIPVMI 96

Query: 496 VWSHGGSHVEVEGSFDNW 549
            W++GG+ V VEGS+DNW
Sbjct: 97  TWNYGGNSVAVEGSWDNW 114

>emb|CAB64719.1| AKIN beta2 [Arabidopsis thaliana]
           gi|13430672|gb|AAK25958.1|AF360248_1 putative kinase
           [Arabidopsis thaliana]
          Length = 289

 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 31/85 (36%), Positives = 42/85 (48%), Gaps = 13/85 (15%)
 Frame = +1

Query: 334 SPPLSPG---SPLTYSPQIPMEPIARADELTAANRNAPEFHGVAGWPAQPKLM------- 483
           SPP SP    SPL ++PQ+P+ P+ R DE+   N +         W   P  +       
Sbjct: 49  SPPHSPRATQSPLMFAPQVPVLPLQRPDEIHIPNPS---------WMQSPSSLYEEASNE 99

Query: 484 ---PVVIVWSHGGSHVEVEGSFDNW 549
              P +I W HGG  + VEGS+DNW
Sbjct: 100 QGIPTMITWCHGGKEIAVEGSWDNW 124

>ref|NP_193369.1| kinase like protein [Arabidopsis thaliana] gi|7485077|pir||C71430
           hypothetical protein - Arabidopsis thaliana
           gi|2244993|emb|CAB10413.1| kinase like protein
           [Arabidopsis thaliana] gi|7268385|emb|CAB78678.1| kinase
           like protein [Arabidopsis thaliana]
          Length = 259

 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 31/85 (36%), Positives = 42/85 (48%), Gaps = 13/85 (15%)
 Frame = +1

Query: 334 SPPLSPG---SPLTYSPQIPMEPIARADELTAANRNAPEFHGVAGWPAQPKLM------- 483
           SPP SP    SPL ++PQ+P+ P+ R DE+   N +         W   P  +       
Sbjct: 19  SPPHSPRATQSPLMFAPQVPVLPLQRPDEIHIPNPS---------WMQSPSSLYEEASNE 69

Query: 484 ---PVVIVWSHGGSHVEVEGSFDNW 549
              P +I W HGG  + VEGS+DNW
Sbjct: 70  QGIPTMITWCHGGKEIAVEGSWDNW 94

>ref|NP_197615.1| AMPKBI (5'-AMP-activated protein kinase, beta subunit,
           complex-interacting region) domain family [Arabidopsis
           thaliana] gi|29294057|gb|AAO73894.1| AMPKBI
           (5'-AMP-activated protein kinase, beta subunit,
           complex-interacting region) domain family [Arabidopsis
           thaliana]
          Length = 283

 Score = 54.7 bits (130), Expect = 8e-07
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
 Frame = +1

Query: 331 ASPPLSPG---SPLTYSPQIPMEPIARADELTAANRNAPEFHGVAGWPAQPKLMPVVIVW 501
           +SPP SP    SP  ++PQ+P+ P+ RA+     N    +   V   P +  + P +I W
Sbjct: 48  SSPPGSPARSPSPFLFAPQVPVAPLQRANAPPPNNIQWNQSQRVFDNPPEQGI-PTIITW 106

Query: 502 SHGGSHVEVEGSFDNW 549
           + GG+ V VEGS+DNW
Sbjct: 107 NQGGNDVAVEGSWDNW 122

>gb|AAO89082.1| SNF1 kinase complex anchoring protein [Lycopersicon esculentum]
          Length = 230

 Score = 53.9 bits (128), Expect = 1e-06
 Identities = 31/108 (28%), Positives = 52/108 (47%), Gaps = 13/108 (12%)
 Frame = +1

Query: 265 GNTTSHKHETPGGTEHEHYARHA----------SPPLSP---GSPLTYSPQIPMEPIARA 405
           G  +  +     G   +H+A ++          SPP SP    SPL + PQ+P+ P+   
Sbjct: 2   GEVSGRRSNVESGIVEDHHALNSRVPSADLMVNSPPQSPHRSASPLLFGPQVPVVPLQGG 61

Query: 406 DELTAANRNAPEFHGVAGWPAQPKLMPVVIVWSHGGSHVEVEGSFDNW 549
           D    +N+        A   +    +P +I WS+GG++V ++GS+DNW
Sbjct: 62  DGNPVSNQMWGNECEDASDHSLEGGIPTLITWSYGGNNVAIQGSWDNW 109



EST assemble image


clone accession position
1 LC003a12_r AV619049 1 529
2 HC024f03_r AV633734 6 499
3 LC047f01_r AV622008 9 507
4 HC033b05_r AV634420 12 515
5 HC094a09_r AV639028 12 420
6 CM100a08_r AV392808 13 503
7 LC007a03_r AV619343 20 551
8 LC030g03_r AV621064 20 542
9 LC056b05_r AV622889 26 516




Chlamydomonas reinhardtii
Kazusa DNA Research Institute