KCC001779A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001779A_C01 KCC001779A_c01
cacgaataggtttgtcTGTGTAGATGGAATAAAGGCATTCCTTGGGACGAATCGCTCACT
CTGCTTGAACGATGTCGTCGGGAGGAGCTCGGCGCCTGGCGCTGCGCCTCGCTAGCCGGG
CAGCGCAGCCTTGTAGCATTGCAGATGCTCAAATGTACTGGGCTTCCCACTCGCGTCTCT
CTTGGCTGCCGGCCATTACCCATGCTCGACAGTTTGCATCATACCCGGCGCACGTCGTGC
TCAACATGCCGTCGCTGTCGCCCACGATGACTCAGGGCAACATCACCAAGTGGCACAAGC
AGCCGGGCGAGCAGGTGGCTCCGGGTCAGATCCTGGCGGAGGTGGAGACGGATAAGGCCA
CCATTGAGTGGGAGGCCCAGGAGGAGGGCTTCATGGCCAAGCACCTGGTGCCGGAGGGGG
CGCGCGACATCGCGGTGGGCACCCCGGTGGCGGTGCTGTCGGAGGAGGCGGACGGAGTGG
CGGGCCTGGCGGCATTCACCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001779A_C01 KCC001779A_c01
         (501 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_328365.1| DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF...   115  2e-25
ref|NP_014328.1| Dihydrolipoamide acetyltransferase component (E...   114  7e-25
gb|AAD55140.1|AF066080_1 dihydrolipoamide S-acetyltransferase [A...   113  1e-24
ref|NP_190788.1| dihydrolipoamide S-acetyltransferase (LTA3); nu...   113  1e-24
pir||A55939 dihydrolipoamide S-acetyltransferase (EC 2.3.1.12) p...   113  1e-24

>ref|XP_328365.1| DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE
           DEHYDROGENASE COMPLEX, MITOCHONDRIAL PRECURSOR (E2)
           (PDC-E2) (MRP3) [Neurospora crassa]
           gi|1352621|sp|P20285|ODP2_NEUCR Dihydrolipoamide
           acetyltransferase component of pyruvate dehydrogenase
           complex, mitochondrial precursor (E2) (PDC-E2) (MRP3)
           gi|83763|pir||A30775 dihydrolipoamide acetyltransferase
           homolog - Neurospora crassa gi|623207|gb|AAA60452.1|
           ribosomal protein gi|28924419|gb|EAA33550.1|
           DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE
           DEHYDROGENASE COMPLEX, MITOCHONDRIAL PRECURSOR (E2)
           (PDC-E2) (MRP3) [Neurospora crassa]
          Length = 458

 Score =  115 bits (289), Expect = 2e-25
 Identities = 57/113 (50%), Positives = 80/113 (70%)
 Frame = +3

Query: 162 ASHSRLSWLPAITHARQFASYPAHVVLNMPSLSPTMTQGNITKWHKQPGEQVAPGQILAE 341
           AS +R++ LP++T  R +ASYP H V+ MP+LSPTMT G I  W K+PG+++ PG++L E
Sbjct: 14  ASVARVA-LPSLT--RWYASYPPHTVVKMPALSPTMTSGGIGAWQKKPGDKIEPGEVLVE 70

Query: 342 VETDKATIEWEAQEEGFMAKHLVPEGARDIAVGTPVAVLSEEADGVAGLAAFT 500
           +ETDKA +++E QEEG +AK L   G +D+AVG P+A+L EE   V     FT
Sbjct: 71  IETDKAQMDFEFQEEGVLAKILKDSGEKDVAVGNPIAILVEEGTDVNAFKDFT 123

>ref|NP_014328.1| Dihydrolipoamide acetyltransferase component (E2) of pyruvate
           dehydrogenase complex; Lat1p [Saccharomyces cerevisiae]
           gi|129060|sp|P12695|ODP2_YEAST Dihydrolipoamide
           acetyltransferase component of pyruvate dehydrogenase
           complex, mitochondrial precursor (E2) (PDC-E2)
           gi|82982|pir||A30198 dihydrolipoamide
           S-acetyltransferase (EC 2.3.1.12) precursor - yeast
           (Saccharomyces cerevisiae) gi|170972|gb|AAA34385.1|
           dihydrolipoamide acetyltransferase precursor (EC
           2.3.1.12) gi|791115|emb|CAA60189.1| dihydrolipoamide
           S-acetyltransferase [Saccharomyces cerevisiae]
           gi|1301955|emb|CAA95945.1| LAT1 [Saccharomyces
           cerevisiae]
          Length = 482

 Score =  114 bits (285), Expect = 7e-25
 Identities = 50/97 (51%), Positives = 72/97 (73%)
 Frame = +3

Query: 207 RQFASYPAHVVLNMPSLSPTMTQGNITKWHKQPGEQVAPGQILAEVETDKATIEWEAQEE 386
           R +ASYP H ++ MP+LSPTMTQGN+  W K+ G+Q++PG+++AE+ETDKA +++E QE+
Sbjct: 26  RCYASYPEHTIIGMPALSPTMTQGNLAAWTKKEGDQLSPGEVIAEIETDKAQMDFEFQED 85

Query: 387 GFMAKHLVPEGARDIAVGTPVAVLSEEADGVAGLAAF 497
           G++AK LVPEG +DI V  P+AV  E+   V     F
Sbjct: 86  GYLAKILVPEGTKDIPVNKPIAVYVEDKADVPAFKDF 122

>gb|AAD55140.1|AF066080_1 dihydrolipoamide S-acetyltransferase [Arabidopsis thaliana]
          Length = 637

 Score =  113 bits (283), Expect = 1e-24
 Identities = 47/88 (53%), Positives = 71/88 (80%)
 Frame = +3

Query: 225 PAHVVLNMPSLSPTMTQGNITKWHKQPGEQVAPGQILAEVETDKATIEWEAQEEGFMAKH 404
           P HVVL MP+LSPTM QGNI KW K+ G+++  G ++ E+ETDKAT+E+E+ EEG++AK 
Sbjct: 210 PPHVVLEMPALSPTMNQGNIAKWWKKEGDKIEVGDVIGEIETDKATLEFESLEEGYLAKI 269

Query: 405 LVPEGARDIAVGTPVAVLSEEADGVAGL 488
           L+PEG++D+AVG P+A++ E+A+ +  +
Sbjct: 270 LIPEGSKDVAVGKPIALIVEDAESIEAI 297

 Score =  105 bits (261), Expect = 4e-22
 Identities = 47/89 (52%), Positives = 67/89 (74%)
 Frame = +3

Query: 228 AHVVLNMPSLSPTMTQGNITKWHKQPGEQVAPGQILAEVETDKATIEWEAQEEGFMAKHL 407
           +  VL MP+LSPTM+ GN+ KW K+ G++V  G +L E+ETDKAT+E+E+QEEGF+AK L
Sbjct: 84  SQTVLAMPALSPTMSHGNVVKWMKKEGDKVEVGDVLCEIETDKATVEFESQEEGFLAKIL 143

Query: 408 VPEGARDIAVGTPVAVLSEEADGVAGLAA 494
           V EG++DI V  P+A++ EE D +  + A
Sbjct: 144 VTEGSKDIPVNEPIAIMVEEEDDIKNVPA 172

>ref|NP_190788.1| dihydrolipoamide S-acetyltransferase (LTA3); nuclear gene encoding
           mitochondrial protein [Arabidopsis thaliana]
           gi|11257430|pir||T49099 dihydrolipoamide
           S-acetyltransferase precursor - Arabidopsis thaliana
           gi|4678949|emb|CAB41340.1| dihydrolipoamide
           S-acetyltransferase precursor [Arabidopsis thaliana]
          Length = 637

 Score =  113 bits (283), Expect = 1e-24
 Identities = 47/88 (53%), Positives = 71/88 (80%)
 Frame = +3

Query: 225 PAHVVLNMPSLSPTMTQGNITKWHKQPGEQVAPGQILAEVETDKATIEWEAQEEGFMAKH 404
           P HVVL MP+LSPTM QGNI KW K+ G+++  G ++ E+ETDKAT+E+E+ EEG++AK 
Sbjct: 210 PPHVVLEMPALSPTMNQGNIAKWWKKEGDKIEVGDVIGEIETDKATLEFESLEEGYLAKI 269

Query: 405 LVPEGARDIAVGTPVAVLSEEADGVAGL 488
           L+PEG++D+AVG P+A++ E+A+ +  +
Sbjct: 270 LIPEGSKDVAVGKPIALIVEDAESIEAI 297

 Score =  105 bits (261), Expect = 4e-22
 Identities = 47/89 (52%), Positives = 67/89 (74%)
 Frame = +3

Query: 228 AHVVLNMPSLSPTMTQGNITKWHKQPGEQVAPGQILAEVETDKATIEWEAQEEGFMAKHL 407
           +  VL MP+LSPTM+ GN+ KW K+ G++V  G +L E+ETDKAT+E+E+QEEGF+AK L
Sbjct: 84  SQTVLAMPALSPTMSHGNVVKWMKKEGDKVEVGDVLCEIETDKATVEFESQEEGFLAKIL 143

Query: 408 VPEGARDIAVGTPVAVLSEEADGVAGLAA 494
           V EG++DI V  P+A++ EE D +  + A
Sbjct: 144 VTEGSKDIPVNEPIAIMVEEEDDIKNVPA 172

>pir||A55939 dihydrolipoamide S-acetyltransferase (EC 2.3.1.12) precursor -
           Arabidopsis thaliana (fragment)
           gi|559395|emb|CAA86300.1| dihydrolipoamide
           acetyltransferase (E2) subunit of PDC [Arabidopsis
           thaliana]
          Length = 610

 Score =  113 bits (283), Expect = 1e-24
 Identities = 47/88 (53%), Positives = 71/88 (80%)
 Frame = +3

Query: 225 PAHVVLNMPSLSPTMTQGNITKWHKQPGEQVAPGQILAEVETDKATIEWEAQEEGFMAKH 404
           P HVVL MP+LSPTM QGNI KW K+ G+++  G ++ E+ETDKAT+E+E+ EEG++AK 
Sbjct: 183 PPHVVLEMPALSPTMNQGNIAKWWKKEGDKIEVGDVIGEIETDKATLEFESLEEGYLAKI 242

Query: 405 LVPEGARDIAVGTPVAVLSEEADGVAGL 488
           L+PEG++D+AVG P+A++ E+A+ +  +
Sbjct: 243 LIPEGSKDVAVGKPIALIVEDAESIEAI 270

 Score =  105 bits (261), Expect = 4e-22
 Identities = 47/89 (52%), Positives = 67/89 (74%)
 Frame = +3

Query: 228 AHVVLNMPSLSPTMTQGNITKWHKQPGEQVAPGQILAEVETDKATIEWEAQEEGFMAKHL 407
           +  VL MP+LSPTM+ GN+ KW K+ G++V  G +L E+ETDKAT+E+E+QEEGF+AK L
Sbjct: 57  SQTVLAMPALSPTMSHGNVVKWMKKEGDKVEVGDVLCEIETDKATVEFESQEEGFLAKIL 116

Query: 408 VPEGARDIAVGTPVAVLSEEADGVAGLAA 494
           V EG++DI V  P+A++ EE D +  + A
Sbjct: 117 VTEGSKDIPVNEPIAIMVEEEDDIKNVPA 145



EST assemble image


clone accession position
1 LCL014f12_r AV626740 1 501
2 CM098d12_r AV392884 17 332




Chlamydomonas reinhardtii
Kazusa DNA Research Institute