Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001778A_C02 KCC001778A_c02
(747 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||JQ2220 hydroxyproline-rich glycoprotein precursor - Chlamyd... 380 e-104
pir||S50755 hypothetical protein VSP-3 - Chlamydomonas reinhardt... 129 5e-29
gb|AAL82540.1| EP-repeat protein precursor [Glossina palpalis pa... 127 2e-28
ref|NP_440372.1| unknown protein [Synechocystis sp. PCC 6803] gi... 125 7e-28
ref|NP_075579.1| gamma-aminobutyric acid A receptor, epsilon; g... 124 2e-27
>pir||JQ2220 hydroxyproline-rich glycoprotein precursor - Chlamydomonas
reinhardtii gi|289961|gb|AAA02923.1| structural wall
protein
Length = 300
Score = 380 bits (976), Expect = e-104
Identities = 178/179 (99%), Positives = 178/179 (99%)
Frame = +2
Query: 209 MKSSHRALWASAVLAMAVLACVVPTADAAKKSPPPADAPPPDSGQYPPPTDWVTWPPPVE 388
MKSSHRALWASAVLAMAVLACVVPTADAAKKSPPPADAPPPDSGQYPPPTDWVTWPPPVE
Sbjct: 1 MKSSHRALWASAVLAMAVLACVVPTADAAKKSPPPADAPPPDSGQYPPPTDWVTWPPPVE 60
Query: 389 EHGHHSPSPSPEDSPSSTPIPTPDILENRDLPSPSPEAEDSPSPSPDLEDSPSPSPEPEV 568
EHGHHSPSPSPEDSPSSTPIPTPDILENRDLPSPSPEAEDSPSPSPDLEDSPS SPEPEV
Sbjct: 61 EHGHHSPSPSPEDSPSSTPIPTPDILENRDLPSPSPEAEDSPSPSPDLEDSPSHSPEPEV 120
Query: 569 ESPSPETETESPSPSPEPEVEDSPSPSPEPEVEDSPSPSPEPMDESPAPEPSPEPVPSP 745
ESPSPETETESPSPSPEPEVEDSPSPSPEPEVEDSPSPSPEPMDESPAPEPSPEPVPSP
Sbjct: 121 ESPSPETETESPSPSPEPEVEDSPSPSPEPEVEDSPSPSPEPMDESPAPEPSPEPVPSP 179
Score = 45.4 bits (106), Expect = 0.001
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 1/139 (0%)
Frame = -2
Query: 698 PWAQARERGSPQPQAQARERGSPQPQARARETGTQSQSPGTGTPPQAQERGKASPQGQAK 519
P +A + SP P + SP+P+ + T+++SP P+ ++ SP+ + +
Sbjct: 94 PSPEAEDSPSPSPDLEDSPSHSPEPEVESPSPETETESPSPSPEPEVEDSPSPSPEPEVE 153
Query: 518 ETASLPPQARERAGRGFPRCLASGWALRTANPPARARASDVRAPPPAAAKSPSQWAGGTG 339
++ S P+ + + P + P + + AP A+ SPS + GG G
Sbjct: 154 DSPSPSPEPMDESPAPEP-----------SPEPVPSPETPSPAPYYGASPSPSPYYGGYG 202
Query: 338 RC-PAVAHPQVGATFSQHP 285
P+V P G++ S P
Sbjct: 203 NYGPSV--PTYGSSPSPAP 219
>pir||S50755 hypothetical protein VSP-3 - Chlamydomonas reinhardtii
gi|530876|gb|AAB53953.1| amino acid feature: Rod protein
domain, aa 266 .. 468; amino acid feature: globular
protein domain, aa 32 .. 265
Length = 473
Score = 129 bits (324), Expect = 5e-29
Identities = 73/154 (47%), Positives = 84/154 (54%), Gaps = 4/154 (2%)
Frame = +2
Query: 296 KKSPPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDILENR 475
K SP P +P P P P+ + P SPSPSP+ SPS +P P+
Sbjct: 272 KASPSPKVSPSPSPKASPSPSPKASPSPSPSPKASPSPSPSPKASPSPSPSPS------- 324
Query: 476 DLPSPSPEAEDSPSPSPDLE----DSPSPSPEPEVESPSPETETESPSPSPEPEVEDSPS 643
PSPSP+A SPSPSP ++ SPSPSP P SP P SPSPSP P SPS
Sbjct: 325 --PSPSPKASPSPSPSPSVQPASKPSPSPSPSPS-PSPRPSPPLPSPSPSPSPSPSPSPS 381
Query: 644 PSPEPEVEDSPSPSPEPMDESPAPEPSPEPVPSP 745
PSP+P SPSPSP P SP+P PSP P PSP
Sbjct: 382 PSPKPSPSPSPSPSPSP-KPSPSPSPSPSPSPSP 414
Score = 116 bits (291), Expect = 3e-25
Identities = 67/150 (44%), Positives = 83/150 (54%), Gaps = 2/150 (1%)
Frame = +2
Query: 302 SPPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDILENRDL 481
SP P+ +P P + P P+ P V+ SPSPSP SPS +P P+P +
Sbjct: 320 SPSPSPSPSPKASPSPSPS------PSVQPASKPSPSPSP--SPSPSPRPSPPLPSPSPS 371
Query: 482 PSPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETESPSPSPEPEV--EDSPSPSPE 655
PSPSP SPSP P SPSPSP P+ SPSP + SPSPSP P+V SPSPSP
Sbjct: 372 PSPSPSPSPSPSPKPSPSPSPSPSPSPK-PSPSP---SPSPSPSPSPKVSPSPSPSPSPS 427
Query: 656 PEVEDSPSPSPEPMDESPAPEPSPEPVPSP 745
P + SPSP+ +P P E +P P+ P
Sbjct: 428 PSPKASPSPAKKPSPPPPVEEGAPPPIEGP 457
Score = 114 bits (285), Expect = 2e-24
Identities = 67/141 (47%), Positives = 78/141 (54%), Gaps = 4/141 (2%)
Frame = +2
Query: 335 SGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDILENRDLPSPSPEAEDSP 514
+G P P+ + P V SPSPSP+ SPS +P +P PSPSP+A SP
Sbjct: 263 TGASPSPSPKASPSPKV------SPSPSPKASPSPSPKASPS-------PSPSPKASPSP 309
Query: 515 SPSPDLEDSPSPSPEPEVESPSPETETESPSPSPEPEVEDSPSPSPEPEVEDSPSPSPEP 694
SPSP SPSPSP P SPSP+ SPSPSP P V+ + PSP P SPSP P P
Sbjct: 310 SPSPKASPSPSPSPSP---SPSPKA---SPSPSPSPSVQPASKPSPSPSPSPSPSPRPSP 363
Query: 695 M----DESPAPEPSPEPVPSP 745
SP+P PSP P PSP
Sbjct: 364 PLPSPSPSPSPSPSPSPSPSP 384
Score = 106 bits (265), Expect = 3e-22
Identities = 67/149 (44%), Positives = 78/149 (51%), Gaps = 5/149 (3%)
Frame = +2
Query: 290 AAKKSPPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDILE 469
A+K SP P+ +P P PP P P SPSPSP SPS +P P P
Sbjct: 344 ASKPSPSPSPSPSPSPRPSPP------LPSP-------SPSPSPSPSPSPSPSPKPS--- 387
Query: 470 NRDLPSPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETESPSPSPEPEVEDSPS-- 643
PSPSP SP PSP SPSPSP P+V SPSP + SPSPSP P+ SP+
Sbjct: 388 ----PSPSPSPSPSPKPSPSPSPSPSPSPSPKV-SPSP---SPSPSPSPSPKASPSPAKK 439
Query: 644 PSPEPEVEDSPSP---SPEPMDESPAPEP 721
PSP P VE+ P P PM+E+ P P
Sbjct: 440 PSPPPPVEEGAPPPIEGPPPMEEAAPPPP 468
Score = 66.6 bits (161), Expect = 4e-10
Identities = 40/115 (34%), Positives = 50/115 (42%), Gaps = 4/115 (3%)
Frame = +2
Query: 278 PTADAAKKSPPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTP 457
P+ SP P+ +P P P P+ P SP PSP SPS +P P+P
Sbjct: 361 PSPPLPSPSPSPSPSPSPSPSPSPKPS------PSPSPSPSPSPKPSPSPSPSPSPSPSP 414
Query: 458 DILENRDLPSPSPEAEDSPSPSPDLEDSPSPSPE----PEVESPSPETETESPSP 610
+ + PSPSP SPSP + SP P E P +E P P E P P
Sbjct: 415 KVSPSPS-PSPSPSPSPKASPSPAKKPSPPPPVEEGAPPPIEGPPPMEEAAPPPP 468
Score = 65.9 bits (159), Expect = 7e-10
Identities = 42/123 (34%), Positives = 54/123 (43%)
Frame = +2
Query: 278 PTADAAKKSPPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTP 457
P + SP P+ +P P P P+ + P + SPSPSP SP +P P+P
Sbjct: 363 PPLPSPSPSPSPSPSPSPSPSPKPSPSPSPSPSPSPKPSPSPSPSPSPSPSPKVSPSPSP 422
Query: 458 DILENRDLPSPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETESPSPSPEPEVEDS 637
PSPSP + SPSP + PSP P VE +P P P P E +
Sbjct: 423 S-------PSPSPSPKASPSP------AKKPSPPPPVEEGAP-----PPIEGPPPMEEAA 464
Query: 638 PSP 646
P P
Sbjct: 465 PPP 467
Score = 39.7 bits (91), Expect = 0.051
Identities = 36/163 (22%), Positives = 60/163 (36%)
Frame = -2
Query: 713 APGIRPWAQARERGSPQPQAQARERGSPQPQARARETGTQSQSPGTGTPPQAQERGKASP 534
+P P + SP P +A SP P+A + + S SP P P
Sbjct: 284 SPKASPSPSPKASPSPSPSPKASPSPSPSPKASPSPSPSPSPSPSPKASPSPSPSPSVQP 343
Query: 533 QGQAKETASLPPQARERAGRGFPRCLASGWALRTANPPARARASDVRAPPPAAAKSPSQW 354
+ + S P R P S + +P + S +P P+ + PS
Sbjct: 344 ASKPSPSPSPSPSPSPRPSPPLPSPSPSPSPSPSPSPSPSPKPSPSPSPSPSPSPKPSP- 402
Query: 353 AGGTGRCPAVAHPQVGATFSQHPLLAQRTRAPPWPTRQRPTGP 225
+ P+ + P+V + S P + +A P P + +P+ P
Sbjct: 403 SPSPSPSPSPS-PKVSPSPSPSPSPSPSPKASPSPAK-KPSPP 443
Score = 38.9 bits (89), Expect = 0.086
Identities = 29/129 (22%), Positives = 51/129 (39%)
Frame = -2
Query: 746 RGWERARGTALAPGIRPWAQARERGSPQPQAQARERGSPQPQARARETGTQSQSPGTGTP 567
+G+E G A+ + + + SP P+A + SP P +A + + SP
Sbjct: 245 KGYEDMSGVAVT--LANFNRTGASPSPSPKASPSPKVSPSPSPKASPSPSPKASPSPSPS 302
Query: 566 PQAQERGKASPQGQAKETASLPPQARERAGRGFPRCLASGWALRTANPPARARASDVRAP 387
P+A SP+ + S P +A + A + + P+ + + R
Sbjct: 303 PKASPSPSPSPKASPSPSPSPSPSPSPKASPSPSPSPSVQPASKPSPSPSPSPSPSPRPS 362
Query: 386 PPAAAKSPS 360
PP + SPS
Sbjct: 363 PPLPSPSPS 371
>gb|AAL82540.1| EP-repeat protein precursor [Glossina palpalis palpalis]
Length = 374
Score = 127 bits (318), Expect = 2e-28
Identities = 68/159 (42%), Positives = 74/159 (45%)
Frame = +2
Query: 269 CVVPTADAAKKSPPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPI 448
C++ + P P P P+ P P P E P P PE P P
Sbjct: 188 CLIEGLPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPE 247
Query: 449 PTPDILENRDLPSPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETESPSPSPEPEV 628
P P+ E P P PE E P P P+ E P P PEPE E P PE E E P P PEPE
Sbjct: 248 PEPE-PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPE-PEPEPEPE-PEPEPEPEP 304
Query: 629 EDSPSPSPEPEVEDSPSPSPEPMDESPAPEPSPEPVPSP 745
E P P PEPE E P P PEP E P PEP PEP P P
Sbjct: 305 EPEPEPEPEPEPEPEPEPEPEPEPE-PEPEPEPEPEPEP 342
Score = 124 bits (312), Expect = 1e-27
Identities = 67/147 (45%), Positives = 70/147 (47%)
Frame = +2
Query: 305 PPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDILENRDLP 484
P P P P+ P P P E P P PE P P P P+ E P
Sbjct: 222 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP-EPEPEP 280
Query: 485 SPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETESPSPSPEPEVEDSPSPSPEPEV 664
P PE E P P P+ E P P PEPE E P PE E E P P PEPE E P P PEPE
Sbjct: 281 EPEPEPEPEPEPEPEPEPEPEPEPEPEPE-PEPEPEPE-PEPEPEPEPEPEPEPEPEPEP 338
Query: 665 EDSPSPSPEPMDESPAPEPSPEPVPSP 745
E P P PEP E P PEP PEP P P
Sbjct: 339 EPEPEPEPEPEPE-PEPEPEPEPEPEP 364
Score = 124 bits (312), Expect = 1e-27
Identities = 67/147 (45%), Positives = 70/147 (47%)
Frame = +2
Query: 305 PPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDILENRDLP 484
P P P P+ P P P E P P PE P P P P+ E P
Sbjct: 216 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP-EPEPEP 274
Query: 485 SPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETESPSPSPEPEVEDSPSPSPEPEV 664
P PE E P P P+ E P P PEPE E P PE E E P P PEPE E P P PEPE
Sbjct: 275 EPEPEPEPEPEPEPEPEPEPEPEPEPEPE-PEPEPEPE-PEPEPEPEPEPEPEPEPEPEP 332
Query: 665 EDSPSPSPEPMDESPAPEPSPEPVPSP 745
E P P PEP E P PEP PEP P P
Sbjct: 333 EPEPEPEPEPEPE-PEPEPEPEPEPEP 358
Score = 124 bits (312), Expect = 1e-27
Identities = 67/147 (45%), Positives = 70/147 (47%)
Frame = +2
Query: 305 PPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDILENRDLP 484
P P P P+ P P P E P P PE P P P P+ E P
Sbjct: 220 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP-EPEPEP 278
Query: 485 SPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETESPSPSPEPEVEDSPSPSPEPEV 664
P PE E P P P+ E P P PEPE E P PE E E P P PEPE E P P PEPE
Sbjct: 279 EPEPEPEPEPEPEPEPEPEPEPEPEPEPE-PEPEPEPE-PEPEPEPEPEPEPEPEPEPEP 336
Query: 665 EDSPSPSPEPMDESPAPEPSPEPVPSP 745
E P P PEP E P PEP PEP P P
Sbjct: 337 EPEPEPEPEPEPE-PEPEPEPEPEPEP 362
Score = 124 bits (312), Expect = 1e-27
Identities = 67/147 (45%), Positives = 70/147 (47%)
Frame = +2
Query: 305 PPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDILENRDLP 484
P P P P+ P P P E P P PE P P P P+ E P
Sbjct: 212 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP-EPEPEP 270
Query: 485 SPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETESPSPSPEPEVEDSPSPSPEPEV 664
P PE E P P P+ E P P PEPE E P PE E E P P PEPE E P P PEPE
Sbjct: 271 EPEPEPEPEPEPEPEPEPEPEPEPEPEPE-PEPEPEPE-PEPEPEPEPEPEPEPEPEPEP 328
Query: 665 EDSPSPSPEPMDESPAPEPSPEPVPSP 745
E P P PEP E P PEP PEP P P
Sbjct: 329 EPEPEPEPEPEPE-PEPEPEPEPEPEP 354
Score = 124 bits (312), Expect = 1e-27
Identities = 67/147 (45%), Positives = 70/147 (47%)
Frame = +2
Query: 305 PPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDILENRDLP 484
P P P P+ P P P E P P PE P P P P+ E P
Sbjct: 214 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP-EPEPEP 272
Query: 485 SPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETESPSPSPEPEVEDSPSPSPEPEV 664
P PE E P P P+ E P P PEPE E P PE E E P P PEPE E P P PEPE
Sbjct: 273 EPEPEPEPEPEPEPEPEPEPEPEPEPEPE-PEPEPEPE-PEPEPEPEPEPEPEPEPEPEP 330
Query: 665 EDSPSPSPEPMDESPAPEPSPEPVPSP 745
E P P PEP E P PEP PEP P P
Sbjct: 331 EPEPEPEPEPEPE-PEPEPEPEPEPEP 356
Score = 121 bits (304), Expect = 1e-26
Identities = 66/147 (44%), Positives = 69/147 (46%)
Frame = +2
Query: 305 PPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDILENRDLP 484
P P P P+ P P P E P P PE P P P P+ E P
Sbjct: 226 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP-EPEPEP 284
Query: 485 SPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETESPSPSPEPEVEDSPSPSPEPEV 664
P PE E P P P+ E P P PEPE E P PE E E P P PEPE E P P PEPE
Sbjct: 285 EPEPEPEPEPEPEPEPEPEPEPEPEPEPE-PEPEPEPE-PEPEPEPEPEPEPEPEPEPEP 342
Query: 665 EDSPSPSPEPMDESPAPEPSPEPVPSP 745
E P P PEP E P PEP PEP P
Sbjct: 343 EPEPEPEPEPEPE-PEPEPEPEPESKP 368
Score = 113 bits (283), Expect = 3e-24
Identities = 62/146 (42%), Positives = 66/146 (44%)
Frame = +2
Query: 305 PPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDILENRDLP 484
P P P P+ P P P E P P PE P P P P+ E P
Sbjct: 234 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP-EPEPEP 292
Query: 485 SPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETESPSPSPEPEVEDSPSPSPEPEV 664
P PE E P P P+ E P P PEPE P PE E P P PEPE E P P PEPE
Sbjct: 293 EPEPEPEPEPEPEPEPEPEPEPEPEPE---PEPEPE---PEPEPEPEPEPEPEPEPEPEP 346
Query: 665 EDSPSPSPEPMDESPAPEPSPEPVPS 742
E P P PEP P PEP PE P+
Sbjct: 347 EPEPEPEPEP---EPEPEPEPESKPN 369
>ref|NP_440372.1| unknown protein [Synechocystis sp. PCC 6803] gi|7470490|pir||S75138
hypothetical protein slr1753 - Synechocystis sp. (strain
PCC 6803) gi|1652128|dbj|BAA17052.1|
ORF_ID:slr1753~unknown protein [Synechocystis sp. PCC
6803]
Length = 1749
Score = 125 bits (314), Expect = 7e-28
Identities = 68/157 (43%), Positives = 72/157 (45%)
Frame = +2
Query: 275 VPTADAAKKSPPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPT 454
+ T + P P P P+ P P P E P P PE P P P
Sbjct: 1015 ITTEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPE 1074
Query: 455 PDILENRDLPSPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETESPSPSPEPEVED 634
P E P P PE E P P P+ E P P PEPE E P PE E E P P PEPE E
Sbjct: 1075 P---EPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPE-PEPEPEPE-PEPEPEPEPEP 1129
Query: 635 SPSPSPEPEVEDSPSPSPEPMDESPAPEPSPEPVPSP 745
P P PEPE E P P PEP E P PEP PEP P P
Sbjct: 1130 EPEPEPEPEPEPEPEPEPEPEPE-PEPEPEPEPEPEP 1165
Score = 124 bits (312), Expect = 1e-27
Identities = 67/147 (45%), Positives = 70/147 (47%)
Frame = +2
Query: 305 PPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDILENRDLP 484
P P P P+ P P P E P P PE P P P P+ E P
Sbjct: 1035 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP-EPEPEP 1093
Query: 485 SPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETESPSPSPEPEVEDSPSPSPEPEV 664
P PE E P P P+ E P P PEPE E P PE E E P P PEPE E P P PEPE
Sbjct: 1094 EPEPEPEPEPEPEPEPEPEPEPEPEPEPE-PEPEPEPE-PEPEPEPEPEPEPEPEPEPEP 1151
Query: 665 EDSPSPSPEPMDESPAPEPSPEPVPSP 745
E P P PEP E P PEP PEP P P
Sbjct: 1152 EPEPEPEPEPEPE-PEPEPEPEPEPEP 1177
Score = 123 bits (308), Expect = 3e-27
Identities = 68/155 (43%), Positives = 72/155 (45%)
Frame = +2
Query: 281 TADAAKKSPPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPD 460
T D + P P P+ P P P E P P PE P P P P+
Sbjct: 1009 TLDNITITTEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPE 1068
Query: 461 ILENRDLPSPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETESPSPSPEPEVEDSP 640
E P P PE E P P P+ E P P PEPE E P PE E E P P PEPE E P
Sbjct: 1069 -PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPE-PEPEPEPE-PEPEPEPEPEPEP 1125
Query: 641 SPSPEPEVEDSPSPSPEPMDESPAPEPSPEPVPSP 745
P PEPE E P P PEP E P PEP PEP P P
Sbjct: 1126 EPEPEPEPEPEPEPEPEPEPE-PEPEPEPEPEPEP 1159
Score = 117 bits (294), Expect = 1e-25
Identities = 64/148 (43%), Positives = 67/148 (45%), Gaps = 1/148 (0%)
Frame = +2
Query: 305 PPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDILENRDLP 484
P P P P+ P P P E P P PE P P P P+ E P
Sbjct: 1095 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP-EPEPEP 1153
Query: 485 SPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETE-SPSPSPEPEVEDSPSPSPEPE 661
P PE E P P P+ E P P PEPE E P PE E E P P PEPE E P P PEPE
Sbjct: 1154 EPEPEPEPEPEPEPEPEPEPEPEPEPEPE-PEPEPEPEPEPEPEPEPEPEPEPEPEPEPE 1212
Query: 662 VEDSPSPSPEPMDESPAPEPSPEPVPSP 745
E P P PEP E P P EP SP
Sbjct: 1213 PEPEPEPEPEPEPELPTPSIPVEPPTSP 1240
Score = 102 bits (253), Expect = 8e-21
Identities = 52/104 (50%), Positives = 58/104 (55%)
Frame = +2
Query: 434 SSTPIPTPDILENRDLPSPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETESPSPS 613
++ PI TP I + L + + E P P P+ E P P PEPE E P PE E E P P
Sbjct: 995 NTVPIGTPPIFDTFTLDNITITTEPEPEPEPEPEPEPEPEPEPEPE-PEPEPEPE-PEPE 1052
Query: 614 PEPEVEDSPSPSPEPEVEDSPSPSPEPMDESPAPEPSPEPVPSP 745
PEPE E P P PEPE E P P PEP E P PEP PEP P P
Sbjct: 1053 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPE-PEPEPEPEPEPEP 1095
Score = 88.2 bits (217), Expect = 1e-16
Identities = 53/133 (39%), Positives = 59/133 (43%)
Frame = +2
Query: 305 PPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDILENRDLP 484
P P P P+ P P P E P P PE P P P P+ E P
Sbjct: 1121 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP-EPEPEP 1179
Query: 485 SPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETESPSPSPEPEVEDSPSPSPEPEV 664
P PE E P P P+ E P P PEPE E P PE E E P P PEPE E P+P V
Sbjct: 1180 EPEPEPEPEPEPEPEPEPEPEPEPEPEPE-PEPEPEPE-PEPEPEPEPE---LPTPSIPV 1234
Query: 665 EDSPSPSPEPMDE 703
E SP E +D+
Sbjct: 1235 EPPTSPDVEEIDD 1247
>ref|NP_075579.1| gamma-aminobutyric acid A receptor, epsilon; gamma-aminobutyric
acid (GABA-A) receptor, subunit epsilon [Rattus
norvegicus] gi|7861743|gb|AAF70383.1|AF189262_1 GABA-A
receptor epsilon-like subunit [Rattus norvegicus]
Length = 989
Score = 124 bits (310), Expect = 2e-27
Identities = 66/149 (44%), Positives = 70/149 (46%), Gaps = 2/149 (1%)
Frame = +2
Query: 305 PPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDILENRDLP 484
P P P P+ P P P E P P PE P P P P+ E P
Sbjct: 273 PEPEPEPEPEPQPEPQPEPQPEPQPEPEPQPEPEPEPEPEPEPEPEPEPEPEP-EPEPEP 331
Query: 485 SPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETE-SPSPSPEPEVEDSPSPSPEPE 661
P PE E P P P+ E P P PEPE E P PE E + P P PEPE E P P PEPE
Sbjct: 332 EPEPEPEPEPEPQPEPEPEPEPEPEPEPE-PEPEPEPQPEPQPEPEPEPEPQPEPQPEPE 390
Query: 662 VEDSPSPSPEPMDE-SPAPEPSPEPVPSP 745
E P P PEP E P PEP PEP P P
Sbjct: 391 PEPEPEPEPEPEPEPEPQPEPQPEPEPQP 419
Score = 122 bits (305), Expect = 8e-27
Identities = 64/149 (42%), Positives = 71/149 (46%), Gaps = 2/149 (1%)
Frame = +2
Query: 305 PPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDILENRDLP 484
P P P P+ P P P E P P PE P P P P+ E + P
Sbjct: 289 PEPQPEPQPEPEPQPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP-EPQPEP 347
Query: 485 SPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETE-SPSPSPEPEVEDSPSPSPEPE 661
P PE E P P P+ E P P P+PE E P PE + E P P PEPE E P P PEPE
Sbjct: 348 EPEPEPEPEPEPEPEPEPEPQPEPQPEPE-PEPEPQPEPQPEPEPEPEPEPEPEPEPEPE 406
Query: 662 VEDSPSPSPEPMDE-SPAPEPSPEPVPSP 745
+ P P PEP E P PEP PEP P P
Sbjct: 407 PQPEPQPEPEPQPEPQPDPEPQPEPGPEP 435
Score = 120 bits (300), Expect = 3e-26
Identities = 66/152 (43%), Positives = 72/152 (46%), Gaps = 5/152 (3%)
Frame = +2
Query: 305 PPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDIL---ENR 475
P P P P+ +P + P E H P P PE P P P P+ +
Sbjct: 239 PHPQPEPQPEPRLHPFHRLRLRPHPYPEPHPGPQPEPEPEPEPEPQPEPQPEPQPEPQPE 298
Query: 476 DLPSPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETE-SPSPSPEPEVEDSPSPSP 652
P P PE E P P P+ E P P PEPE E P PE E E P P PEPE E P P P
Sbjct: 299 PEPQPEPEPEPEPEPEPEPEPEPEPEPEPEPE-PEPEPEPEPEPEPQPEPEPEPEPEPEP 357
Query: 653 EPEVEDSPSPSPEPMDE-SPAPEPSPEPVPSP 745
EPE E P P PEP E P PEP PEP P P
Sbjct: 358 EPEPEPEPEPQPEPQPEPEPEPEPQPEPQPEP 389
Score = 115 bits (288), Expect = 7e-25
Identities = 60/153 (39%), Positives = 72/153 (46%), Gaps = 6/153 (3%)
Frame = +2
Query: 305 PPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDILENRDLP 484
P P P P+ P P P E P P PE P P P P+ E + P
Sbjct: 327 PEPEPEPEPEPEPEPEPQPEPEPEPEPEPEPEPEPEPEPEPQPEPQPEPEPEP-EPQPEP 385
Query: 485 SPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETE-SPSPSPEPEVEDSPSPSPEPE 661
P PE E P P P+ E P P PEP+ E P P+ E + P P PEP E P P PEP+
Sbjct: 386 QPEPEPEPEPEPEPEPEPEPEPQPEPQPE-PEPQPEPQPDPEPQPEPGPEPGPEPEPEPQ 444
Query: 662 VEDSPSPSPEPMDESPA-----PEPSPEPVPSP 745
+E P P PEP E + PEP P+P+P P
Sbjct: 445 LEPQPEPEPEPQPEPESELDLEPEPEPQPLPEP 477
Score = 115 bits (287), Expect = 9e-25
Identities = 61/148 (41%), Positives = 67/148 (45%), Gaps = 1/148 (0%)
Frame = +2
Query: 305 PPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDILENRDLP 484
P P P P+ P P P E P P PE P P P P+ P
Sbjct: 375 PEPEPEPQPEPQPEPEPEPEPEPEPEPEPEPEPQPEPQPEPEPQPEPQPDPE-----PQP 429
Query: 485 SPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETE-SPSPSPEPEVEDSPSPSPEPE 661
P PE P P P LE P P PEP+ P PE+E + P P P+P E P P PEPE
Sbjct: 430 EPGPEPGPEPEPEPQLEPQPEPEPEPQ---PEPESELDLEPEPEPQPLPEPQPEPEPEPE 486
Query: 662 VEDSPSPSPEPMDESPAPEPSPEPVPSP 745
E P P PEP E P PEP PEP P P
Sbjct: 487 PEPEPEPEPEPEPE-PEPEPEPEPEPEP 513
Score = 99.0 bits (245), Expect = 7e-20
Identities = 64/209 (30%), Positives = 75/209 (35%), Gaps = 62/209 (29%)
Frame = +2
Query: 305 PPPADAPPPDSGQYPPPTDWVTWP---------------PPVEEHGHHSPSPSPEDSPSS 439
P P P P +G+ P P + WP P + P P P+ P
Sbjct: 109 PQPQPQPQPLAGRQPLPQP-LPWPLPQPQPEPEPQPEPQPEPQPEPQPEPQPEPQPEPQP 167
Query: 440 TPIPTPDILENRD-----LPSPSPEAEDSPSPSPDLEDSPSPSPEPEVE----------- 571
P P P L R LP P PE + P P P E P P PEP+ +
Sbjct: 168 EPQPQPQPLAGRQPLPWPLPLPLPEPQPDPQPDPQPEPQPEPQPEPQPQPQTPGQVQAGR 227
Query: 572 ------------SPSPETETE-------------------SPSPSPEPEVEDSPSPSPEP 658
P PE + E P P PEPE E P P PEP
Sbjct: 228 QPRPKPQPDPHPHPQPEPQPEPRLHPFHRLRLRPHPYPEPHPGPQPEPEPEPEPEPQPEP 287
Query: 659 EVEDSPSPSPEPMDESPAPEPSPEPVPSP 745
+ E P P PEP + P PEP PEP P P
Sbjct: 288 QPEPQPEPQPEP-EPQPEPEPEPEPEPEP 315
Score = 92.4 bits (228), Expect = 7e-18
Identities = 53/175 (30%), Positives = 70/175 (39%), Gaps = 28/175 (16%)
Frame = +2
Query: 305 PPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDILENRD-- 478
P P P + + P P+ E P P P+ P P P P L R
Sbjct: 66 PQPQSESPGHDDVFSSQPQPLPQPQPLPEP-QPLPEPEPQPQPQPQPQPQPQPLAGRQPL 124
Query: 479 -------LPSPSPEAEDSPSPSPDLEDSPSPSPEPEVE-SPSPETETES----------- 601
LP P PE E P P P+ + P P P+PE + P PE + +
Sbjct: 125 PQPLPWPLPQPQPEPEPQPEPQPEPQPEPQPEPQPEPQPEPQPEPQPQPQPLAGRQPLPW 184
Query: 602 PSPSPEPEVEDSPSPSPEPEVEDSPSPSPEPMDESPA-------PEPSPEPVPSP 745
P P P PE + P P P+PE + P P P+P ++P P P P+P P P
Sbjct: 185 PLPLPLPEPQPDPQPDPQPEPQPEPQPEPQPQPQTPGQVQAGRQPRPKPQPDPHP 239
Score = 91.7 bits (226), Expect = 1e-17
Identities = 57/147 (38%), Positives = 67/147 (44%), Gaps = 1/147 (0%)
Frame = +2
Query: 305 PPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDILENRDLP 484
P P P P+ P P P P E G P P PE P P P P+ P
Sbjct: 407 PQPEPQPEPEPQPEPQPD-----PEPQPEPGPE-PGPEPEPEPQLEPQPEPE-----PEP 455
Query: 485 SPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETE-SPSPSPEPEVEDSPSPSPEPE 661
P PE+E P P+ + P P PEPE E P PE E E P P PEPE E P P PEPE
Sbjct: 456 QPEPESELDLEPEPEPQPLPEPQPEPEPE-PEPEPEPEPEPEPEPEPEPEPEPEPEPEPE 514
Query: 662 VEDSPSPSPEPMDESPAPEPSPEPVPS 742
+E P E P+PS + +P+
Sbjct: 515 LELEPQSQLE-------PQPSGKKLPA 534
Score = 88.2 bits (217), Expect = 1e-16
Identities = 57/159 (35%), Positives = 67/159 (41%), Gaps = 3/159 (1%)
Frame = +2
Query: 278 PTADAAKKSPPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTP 457
P D P P P P P D V + + S SP +D SS P P P
Sbjct: 31 PAQDKVVFGPQPQPVPQPLIPPESPAGDDVVFDSQPQPQ---SESPGHDDVFSSQPQPLP 87
Query: 458 DILENRDLPSPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSP---ETETESPSPSPEPEV 628
P P PE P P P+ E P P P+P+ + P P P P P P+
Sbjct: 88 Q-------PQPLPE----PQPLPEPEPQPQPQPQPQPQ-PQPLAGRQPLPQPLPWPLPQP 135
Query: 629 EDSPSPSPEPEVEDSPSPSPEPMDESPAPEPSPEPVPSP 745
+ P P PEP+ E P P PEP E P PEP PEP P P
Sbjct: 136 QPEPEPQPEPQPEPQPEPQPEPQPE-PQPEPQPEPQPQP 173
Score = 74.3 bits (181), Expect = 2e-12
Identities = 45/129 (34%), Positives = 51/129 (38%)
Frame = +2
Query: 305 PPPADAPPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDILENRDLP 484
P P P P+ G P P + P E P P PE P P P L P
Sbjct: 425 PEPQPEPGPEPGPEPEPEPQLEPQPEPEPE----PQPEPESELDLEPEPEPQPLPE---P 477
Query: 485 SPSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETESPSPSPEPEVEDSPSPSPEPEV 664
P PE E P P P+ E P P PEPE E P P PEPE+E P EP+
Sbjct: 478 QPEPEPEPEPEPEPEPEPEPEPEPEPEPE----------PEPEPEPELELEPQSQLEPQP 527
Query: 665 EDSPSPSPE 691
P+ E
Sbjct: 528 SGKKLPARE 536
Score = 45.4 bits (106), Expect = 0.001
Identities = 32/103 (31%), Positives = 38/103 (36%), Gaps = 9/103 (8%)
Frame = +2
Query: 323 PPPDSGQYPPPTDWVTWPPPVEEHGHHSPSPSPEDSPSSTPIPTPDILENRDLPSPSPEA 502
P P+ P P + P E P P PE P P P P E P P PE
Sbjct: 449 PEPEPEPQPEPESELDLEPEPEPQPLPEPQPEPEPEPEPEPEPEP---EPEPEPEPEPEP 505
Query: 503 EDSPSPSPDL--------EDSPSPSPEPEVESP-SPETETESP 604
E P P P+L E PS P E+ + + TE P
Sbjct: 506 EPEPEPEPELELEPQSQLEPQPSGKKLPARETELTADHTTERP 548
Score = 35.4 bits (80), Expect = 0.96
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +2
Query: 488 PSPEAEDSPSPSPDLEDSPSPSPEPEVESPSPETETESPSPSPEPEVEDSPSPSPEPEVE 667
P + E+ P + P P P P+ P PE SP+ + V DS P+P+ E
Sbjct: 22 PHIKLENKPPAQDKVVFGPQPQPVPQPLIP-PE------SPAGDDVVFDS---QPQPQSE 71
Query: 668 DSPSPSPEPMDES-PAPEPSPEPVPSP 745
SP + + S P P P P+P+P P
Sbjct: 72 ---SPGHDDVFSSQPQPLPQPQPLPEP 95
