KCC001770A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001770A_C01 KCC001770A_c01
gccgcatgaagcgtctggcgctcgtggtgctcgcgcggacgcttacggacaacgacgtta
agcgcctgcgGGAGCTGTTTGTGGCGATGGACACCAACAACGATGGTCGCATCGACAGCA
ACGACCTGCACAAGGCGCTGGAGAAGGTGGGCGCCGCCATCGACGAGAGCGAGATGCAGG
ACCTGTTCCACGCTTCGGACATCGACGGCAGCGGCCAGATCGATTACGAGGAGTTCATTG
CGGCCATGCTCGATTCGAACCGCGTGGCGCGCCGCAAGGAGGCGGTGCGCAAGTCGTTTG
AGGAGCTCGACAAGGACGGCGACGGCTTCATCACGGCGGAGGACCTGGTGAAGGTGATGC
CGCGCGGCTCATCCATTGAGCTTGCGCGCGAGATGGTGAATGAGGTGGACAAGAACAACG
ACGGCCGCGTGGACTACGCGGAGTTTGAGAAGATGATGCAATCATGAGGAGCTCAAGCTT
GGAGGATGGCGCAGCAGCCGGAGCTGGAGACAGCAAGGGGCCCCGGATACGGTCGCAGTT
TTCTTGTTGGTTTTCGTGGGCGGCTGAAATCACCGGGCATGATATTGTCAGAAGGGCCAT
CTGCTGTAACGTTGCAGAGAGAGGCGCGAGAGCGCTGTCAGTGGACCGACCGAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001770A_C01 KCC001770A_c01
         (654 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_195257.1| calcium-dependent protein kinase, putative (CDP...   135  7e-31
gb|AAL68972.1| calmodulin-like-domain protein kinase CPK2 [Cucur...   131  8e-30
dbj|BAA05918.1| calcium-dependent protein kinase [Arabidopsis th...   130  2e-29
gb|AAL68971.1| phloem calmodulin-like-domain protein kinase PCPK...   130  2e-29
ref|NP_565411.2| calcium-dependent protein kinase (CDPK)(CPK6) [...   129  4e-29

>ref|NP_195257.1| calcium-dependent protein kinase, putative (CDPK) [Arabidopsis
           thaliana] gi|7434359|pir||T06126 calcium-dependent
           protein kinase (EC 2.7.1.-) CPK5 - Arabidopsis thaliana
           gi|1399273|gb|AAB03245.1| calmodulin-domain protein
           kinase CDPK isoform 5 [Arabidopsis thaliana]
           gi|3080419|emb|CAA18738.1| calmodulin-domain protein
           kinase CDPK isoform 5 (CPK5) [Arabidopsis thaliana]
           gi|7270483|emb|CAB80248.1| calmodulin-domain protein
           kinase CDPK isoform 5 (CPK5) [Arabidopsis thaliana]
          Length = 556

 Score =  135 bits (339), Expect = 7e-31
 Identities = 68/169 (40%), Positives = 108/169 (63%), Gaps = 1/169 (0%)
 Frame = +3

Query: 3   RMKRLALVVLARTLTDNDVKRLRELFVAMDTNNDGRIDSNDLHKALEKVGAAIDESEMQD 182
           ++K++AL V+A +L++ ++  LRE+F AMDT+N G I  ++L   L K G+ + ++E+ D
Sbjct: 382 KLKKMALKVIAESLSEEEIAGLREMFQAMDTDNSGAITFDELKAGLRKYGSTLKDTEIHD 441

Query: 183 LFHASDIDGSGQIDYEEFIAAMLDSNRVARRKEAVRKSFEELDKDGDGFITAEDLVKV-M 359
           L  A+D+D SG IDY EFIAA +  N++ R +  V  +F+  DKDG GFIT ++L +  +
Sbjct: 442 LMDAADVDNSGTIDYSEFIAATIHLNKLEREEHLV-AAFQYFDKDGSGFITIDELQQACV 500

Query: 360 PRGSSIELAREMVNEVDKNNDGRVDYAEFEKMMQS*GAQAWRMAQQPEL 506
             G +     +++ EVD+NNDG++DY EF +MMQ   A   R   +  L
Sbjct: 501 EHGMADVFLEDIIKEVDQNNDGKIDYGEFVEMMQKGNAGVGRRTMRNSL 549

>gb|AAL68972.1| calmodulin-like-domain protein kinase CPK2 [Cucurbita maxima]
          Length = 558

 Score =  131 bits (330), Expect = 8e-30
 Identities = 70/178 (39%), Positives = 110/178 (61%), Gaps = 3/178 (1%)
 Frame = +3

Query: 3   RMKRLALVVLARTLTDNDVKRLRELFVAMDTNNDGRIDSNDLHKALEKVGAAIDESEMQD 182
           ++K++AL V+A +L++ ++  LRE+F AMDT+N G I  ++L   L + G+ + ++E++D
Sbjct: 380 KLKKMALRVIAESLSEEEIAGLREMFTAMDTDNSGAITFDELKAGLRRYGSTLKDTEIRD 439

Query: 183 LFHASDIDGSGQIDYEEFIAAMLDSNRVARRKEAVRKSFEELDKDGDGFITAEDLVKVMP 362
           L  A+DID SG IDY EFIAA +  N++ R +  V  +F   DKDG G+IT ++L +   
Sbjct: 440 LMEAADIDNSGTIDYGEFIAATIHLNKLEREEHLV-AAFRYFDKDGSGYITVDELQQACA 498

Query: 363 RGSSIE-LAREMVNEVDKNNDGRVDYAEFEKMMQS*GAQAWR--MAQQPELETARGPG 527
             +  +    +++ EVD++NDGR+DY+EF  MMQ   A   R  M     L    GPG
Sbjct: 499 EHNMTDAYLEDIIREVDQDNDGRIDYSEFVAMMQKGNAGIGRRTMRNSLNLSMRDGPG 556

 Score = 32.3 bits (72), Expect = 6.3
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 66  LRELFVAMDTNNDGRIDSNDLHKALEKVGAAIDESEMQDLFHASDIDGSGQI 221
           L ++   +D +NDGRID ++    ++K  A I    M++  + S  DG G +
Sbjct: 507 LEDIIREVDQDNDGRIDYSEFVAMMQKGNAGIGRRTMRNSLNLSMRDGPGAL 558

>dbj|BAA05918.1| calcium-dependent protein kinase [Arabidopsis thaliana]
          Length = 483

 Score =  130 bits (326), Expect = 2e-29
 Identities = 66/169 (39%), Positives = 106/169 (62%), Gaps = 1/169 (0%)
 Frame = +3

Query: 3   RMKRLALVVLARTLTDNDVKRLRELFVAMDTNNDGRIDSNDLHKALEKVGAAIDESEMQD 182
           ++K++AL V+A +L++ ++  LR +F AMDT+N G I  ++L   L K G+ ++ +E+ D
Sbjct: 309 KLKKMALKVIAESLSEEEIAGLRAMFEAMDTDNSGAITFDELKAGLRKYGSTLESTEIHD 368

Query: 183 LFHASDIDGSGQIDYEEFIAAMLDSNRVARRKEAVRKSFEELDKDGDGFITAEDLVK-VM 359
           L  A+D+D SG IDY EFIAA +  N++ R +  V  +F+  DKDG G+IT ++L +  +
Sbjct: 369 LMDAADVDNSGTIDYSEFIAATIHLNKLEREEHLV-SAFQYFDKDGSGYITIDELQQSCI 427

Query: 360 PRGSSIELAREMVNEVDKNNDGRVDYAEFEKMMQS*GAQAWRMAQQPEL 506
             G +     +++ EVD++NDGR+DY EF  MMQ   A   R   +  L
Sbjct: 428 EHGMTDVFLEDIIKEVDQDNDGRIDYEEFVAMMQKGNAGVGRRTMKNSL 476

>gb|AAL68971.1| phloem calmodulin-like-domain protein kinase PCPK1 [Cucurbita
           maxima]
          Length = 571

 Score =  130 bits (326), Expect = 2e-29
 Identities = 71/178 (39%), Positives = 108/178 (59%), Gaps = 3/178 (1%)
 Frame = +3

Query: 3   RMKRLALVVLARTLTDNDVKRLRELFVAMDTNNDGRIDSNDLHKALEKVGAAIDESEMQD 182
           ++K++AL V+A +L++ ++  LRE+F AMDT+N G I  ++L   L + G+ + + E++D
Sbjct: 393 KLKKMALRVIAESLSEEEIAGLREMFTAMDTDNSGAITFDELKAGLRRYGSTLKDIEIRD 452

Query: 183 LFHASDIDGSGQIDYEEFIAAMLDSNRVARRKEAVRKSFEELDKDGDGFITAEDLVKVMP 362
           L  A+DID SG IDY EFIAA +  N++ R +  V  +F   DKDG G+IT ++L +   
Sbjct: 453 LMDAADIDNSGTIDYGEFIAATIHLNKLEREEHLVA-AFRYFDKDGSGYITVDELQQACA 511

Query: 363 RGSSIELARE-MVNEVDKNNDGRVDYAEFEKMMQS*GAQAWR--MAQQPELETARGPG 527
             +  +   E ++ EVD++NDGR+DY EF  MMQ   A   R  M     L    GPG
Sbjct: 512 EHNMTDAYLEDVIREVDQDNDGRIDYGEFVAMMQKGNAGVGRRTMRNSLNLSMRDGPG 569

>ref|NP_565411.2| calcium-dependent protein kinase (CDPK)(CPK6) [Arabidopsis
           thaliana] gi|25287681|pir||D84550 probable
           calmodulin-domain protein kinase CPK6 [imported] -
           Arabidopsis thaliana gi|1399275|gb|AAB03246.1|
           calmodulin-domain protein kinase CDPK isoform 6
           [Arabidopsis thaliana] gi|2623752|gb|AAB86506.1|
           putative calmodulin-domain protein kinase CPK6
           [Arabidopsis thaliana] gi|22655117|gb|AAM98149.1|
           putative calmodulin-domain protein kinase CPK6
           [Arabidopsis thaliana] gi|27311989|gb|AAO00960.1|
           putative calmodulin-domain protein kinase CPK6
           [Arabidopsis thaliana]
          Length = 544

 Score =  129 bits (324), Expect = 4e-29
 Identities = 65/169 (38%), Positives = 107/169 (62%), Gaps = 1/169 (0%)
 Frame = +3

Query: 3   RMKRLALVVLARTLTDNDVKRLRELFVAMDTNNDGRIDSNDLHKALEKVGAAIDESEMQD 182
           ++K++AL V+A +L++ ++  LR +F AMDT+N G I  ++L   L + G+ + ++E++D
Sbjct: 370 KLKKMALKVIAESLSEEEIAGLRAMFEAMDTDNSGAITFDELKAGLRRYGSTLKDTEIRD 429

Query: 183 LFHASDIDGSGQIDYEEFIAAMLDSNRVARRKEAVRKSFEELDKDGDGFITAEDLVK-VM 359
           L  A+D+D SG IDY EFIAA +  N++ R +  V  +F+  DKDG G+IT ++L +  +
Sbjct: 430 LMEAADVDNSGTIDYSEFIAATIHLNKLEREEHLV-SAFQYFDKDGSGYITIDELQQSCI 488

Query: 360 PRGSSIELAREMVNEVDKNNDGRVDYAEFEKMMQS*GAQAWRMAQQPEL 506
             G +     +++ EVD++NDGR+DY EF  MMQ   A   R   +  L
Sbjct: 489 EHGMTDVFLEDIIKEVDQDNDGRIDYEEFVAMMQKGNAGVGRRTMKNSL 537



EST assemble image


clone accession position
1 LCL041c09_r AV628406 1 463
2 LC039h11_r AV621707 71 567
3 LCL069f04_r AV629946 163 584
4 CM096c03_r AV392731 200 654




Chlamydomonas reinhardtii
Kazusa DNA Research Institute