KCC001762A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001762A_C01 KCC001762A_c01
ggtagcacaggagcccccacagctcgtgagcccgggaggtgcgcgccctgaccgtcgcgt
gtctcttctctactccatgtCCTTTATACATCACCTACCTAGCAATCGTGTCCTCGTGAA
AACGTCCTGTAACCTCGCAGCATTGCTATGCACCTACCACCCCAAGAGCCATGAATGCAC
GGCTGCGAAGTTCCACCGCAGTTATCAGTTCTACATCCGCACTACAGCTTATTAAGCGCC
GTGCGCACACTTTGCTAGGCGTACAAGTCAAACTTACAACAGTAACGCAGCTACGGTATA
TATACATTACGTCACAACTGCTGCGGTGCACCATCTTCTGACCCCGAATGTGAGCCCGCC
ACTACGCACGGAGAACGCACCGCCGACGGCGACCACACCGGCGACGACGCCGCCGGCTGC
TC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001762A_C01 KCC001762A_c01
         (422 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P07509|SODC_NEUCR Superoxide dismutase [Cu-Zn] gi|101875|pir|...    36  0.11
ref|XP_329323.1| SUPEROXIDE DISMUTASE [CU-ZN] [Neurospora crassa...    36  0.11
pir||S28937 protamine 2 precursor - bovine gi|670|emb|CAA42913.1...    36  0.14
emb|CAA42912.1| protamine 2 [Bos taurus]                               36  0.14
dbj|BAC83061.1| hypothetical protein [Oryza sativa (japonica cul...    34  0.54

>sp|P07509|SODC_NEUCR Superoxide dismutase [Cu-Zn] gi|101875|pir||A36591 superoxide
           dismutase (EC 1.15.1.1) (Cu-Zn) - Neurospora crassa
           gi|168909|gb|AAA63780.1| Cu/Zn-superoxide dismutase
          Length = 154

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 18/41 (43%), Positives = 23/41 (55%), Gaps = 1/41 (2%)
 Frame = +1

Query: 286 RSYGIYTLRHNCCGAPSSDPECEP-ATTHGERTADGDHTGD 405
           R + I+T   N  G  S+ P   P  TTHG+RTA+  H GD
Sbjct: 44  RGFHIHTFGDNTNGCTSAGPHFNPHGTTHGDRTAEVRHVGD 84

>ref|XP_329323.1| SUPEROXIDE DISMUTASE [CU-ZN] [Neurospora crassa]
           gi|28926067|gb|EAA35055.1| SUPEROXIDE DISMUTASE [CU-ZN]
           [Neurospora crassa]
          Length = 167

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 18/41 (43%), Positives = 23/41 (55%), Gaps = 1/41 (2%)
 Frame = +1

Query: 286 RSYGIYTLRHNCCGAPSSDPECEP-ATTHGERTADGDHTGD 405
           R + I+T   N  G  S+ P   P  TTHG+RTA+  H GD
Sbjct: 57  RGFHIHTFGDNTNGCTSAGPHFNPHGTTHGDRTAEVRHVGD 97

>pir||S28937 protamine 2 precursor - bovine gi|670|emb|CAA42913.1| protamine 2
           [Bos taurus]
          Length = 115

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 14/19 (73%), Positives = 16/19 (83%)
 Frame = +3

Query: 360 HYARRTHRRRRPHRRRRRR 416
           HY  R+H RRRP+RRRRRR
Sbjct: 51  HYRHRSHTRRRPYRRRRRR 69

>emb|CAA42912.1| protamine 2 [Bos taurus]
          Length = 135

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 14/19 (73%), Positives = 16/19 (83%)
 Frame = +3

Query: 360 HYARRTHRRRRPHRRRRRR 416
           HY  R+H RRRP+RRRRRR
Sbjct: 92  HYRHRSHTRRRPYRRRRRR 110

>dbj|BAC83061.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 86

 Score = 33.9 bits (76), Expect = 0.54
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 314 TTAAVHHLLTPNVSPPLRTENAPPTATTPATTPP 415
           T+AA+H LL   V+PP  T   PP   TP+   P
Sbjct: 36  TSAAMHALLASRVAPPTHTSPPPPFQLTPSVPSP 69



EST assemble image


clone accession position
1 CM093g09_r AV392980 1 425
2 MX020d07_r BP086923 131 313




Chlamydomonas reinhardtii
Kazusa DNA Research Institute