KCC001758A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001758A_C01 KCC001758A_c01
acactacacactgtacccgtgctGCTCAAGTGTACAAAAGCAACGTCTTTCTTCCGTCAC
GACTCGACAGCGATGGGCGGGCACGACGACCTAAAGCAGCCACTGATGGGAGCGCAGCCC
TCTGCGCCTCCACTTGGCTCTGGATACCCAGCTGCTGCAGCGCCCGCCACCGGCTATCCC
GTAATTCGCCCGGAGGAGCAACAGCAGCAGCCGGCCCGCGCAACCTTCTACCCCTCCATC
CCCTCCGCTGGTGCCGGTCCCTCATTCAGCGGCAGCTATGCTCCACAGCCTCAGATGGTG
GACGCCGCCGACCGAGGTGGTGATTGTGTCGTGCCGCCACGACCACGAGTGCGGCGGGCC
GCCAGAGCGCATGATGTGCGGCAACTGTCGGCACCTGGTTACGCCCAGCGTGCGGAAGCG
ATGGGGGCTGTGTTCGTGCATCACGGCCGTGGGGCTGTGCTCCACCGGCCTGGGGCTGTG
CTTCTGGCTGCCATTCTGCTGCCCCGTCACTCTGGACACCGTGTACCAGTGCCCCACGTG
CGCGGCGGAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001758A_C01 KCC001758A_c01
         (551 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_319651.1| ENSANGP00000014002 [Anopheles gambiae] gi|21302...    45  5e-04
ref|ZP_00044668.1| COG2274: ABC-type bacteriocin/lantibiotic exp...    44  0.002
pir||T05421 hypothetical protein F28A23.90 - Arabidopsis thalian...    42  0.004
ref|NP_567956.1| C2 domain-containing protein [Arabidopsis thali...    42  0.004
ref|NP_861431.1| annexin A11b; annexin 11b; ANX XIb [Danio rerio...    41  0.009

>ref|XP_319651.1| ENSANGP00000014002 [Anopheles gambiae] gi|21302854|gb|EAA14999.1|
           ENSANGP00000014002 [Anopheles gambiae str. PEST]
          Length = 181

 Score = 45.4 bits (106), Expect = 5e-04
 Identities = 29/76 (38%), Positives = 38/76 (49%)
 Frame = +1

Query: 109 GAQPSAPPLGSGYPAAAAPATGYPVIRPEEQQQQPARATFYPSIPSAGAGPSFSGSYAPQ 288
           GAQPSAPP  +   A+AAP+  YP  R E  QQQP   T     P AG+ P +       
Sbjct: 45  GAQPSAPPTVAASAASAAPSASYP--RQEYVQQQPIATTHTYVTPMAGSVPYYGA----- 97

Query: 289 PQMVDAADRGGDCVVP 336
              +D  ++G   +VP
Sbjct: 98  ---MDGGNKGPVPIVP 110

>ref|ZP_00044668.1| COG2274: ABC-type bacteriocin/lantibiotic exporters, contain an
           N-terminal double-glycine peptidase domain
           [Magnetococcus sp. MC-1]
          Length = 886

 Score = 43.5 bits (101), Expect = 0.002
 Identities = 32/92 (34%), Positives = 39/92 (41%), Gaps = 4/92 (4%)
 Frame = +1

Query: 100 PLMGAQPS-APPLGSGYPAAAAPATGYPVIRPEEQQQQPARATFYPSIPSAGAGPSFSGS 276
           P  GA P+ APP G+G PAA APA G P          PA          AGA P  + +
Sbjct: 592 PPAGAPPAGAPPAGAGAPAAGAPAAGAPAAGAPPAGAPPAAGAPAAGALPAGAKPPATAT 651

Query: 277 YAP---QPQMVDAADRGGDCVVPPRPRVRRAA 363
             P   +P    AA  G    VP     +R+A
Sbjct: 652 PVPPDSKPPAATAASTGVPSTVPASATQQRSA 683

 Score = 36.6 bits (83), Expect = 0.23
 Identities = 22/61 (36%), Positives = 26/61 (42%)
 Frame = +1

Query: 109 GAQPSAPPLGSGYPAAAAPATGYPVIRPEEQQQQPARATFYPSIPSAGAGPSFSGSYAPQ 288
           GA+P APP     PA A PA   P   P      PA        P+AGA P+ +   A  
Sbjct: 575 GAKPPAPPAAGAPPAGAPPAGAPPAGAPPAGAGAPAAGAPAAGAPAAGAPPAGAPPAAGA 634

Query: 289 P 291
           P
Sbjct: 635 P 635

>pir||T05421 hypothetical protein F28A23.90 - Arabidopsis thaliana
           gi|2911047|emb|CAA17557.1| putative protein [Arabidopsis
           thaliana] gi|7270364|emb|CAB80132.1| putative protein
           [Arabidopsis thaliana]
          Length = 279

 Score = 42.4 bits (98), Expect = 0.004
 Identities = 26/64 (40%), Positives = 31/64 (47%)
 Frame = +1

Query: 100 PLMGAQPSAPPLGSGYPAAAAPATGYPVIRPEEQQQQPARATFYPSIPSAGAGPSFSGSY 279
           P +  Q    P  SGYP    PA+GYP   P+     P   + YP IPSA   P  S +Y
Sbjct: 188 PSLYPQVQQYPQPSGYP----PASGYP---PQPSAYPPPSTSGYPPIPSAYPPPPPSSAY 240

Query: 280 APQP 291
            PQP
Sbjct: 241 PPQP 244

>ref|NP_567956.1| C2 domain-containing protein [Arabidopsis thaliana]
           gi|15724316|gb|AAL06551.1|AF412098_1 AT4g34150/F28A23_90
           [Arabidopsis thaliana] gi|23397247|gb|AAN31905.1|
           unknown protein [Arabidopsis thaliana]
          Length = 247

 Score = 42.4 bits (98), Expect = 0.004
 Identities = 26/64 (40%), Positives = 31/64 (47%)
 Frame = +1

Query: 100 PLMGAQPSAPPLGSGYPAAAAPATGYPVIRPEEQQQQPARATFYPSIPSAGAGPSFSGSY 279
           P +  Q    P  SGYP    PA+GYP   P+     P   + YP IPSA   P  S +Y
Sbjct: 169 PSLYPQVQQYPQPSGYP----PASGYP---PQPSAYPPPSTSGYPPIPSAYPPPPPSSAY 221

Query: 280 APQP 291
            PQP
Sbjct: 222 PPQP 225

>ref|NP_861431.1| annexin A11b; annexin 11b; ANX XIb [Danio rerio]
           gi|27762276|gb|AAO20276.1| annexin 11b [Danio rerio]
          Length = 485

 Score = 41.2 bits (95), Expect = 0.009
 Identities = 24/62 (38%), Positives = 30/62 (47%), Gaps = 4/62 (6%)
 Frame = +1

Query: 118 PSAPPLGSGYPAAAA----PATGYPVIRPEEQQQQPARATFYPSIPSAGAGPSFSGSYAP 285
           P  PP G  YP A+     PA GY    P +    P +A +YP  P  GA P   G++ P
Sbjct: 4   PGYPPAGGSYPPASGPYQQPAAGY----PPQPGAYPPQAGYYP--PQPGAFPPQPGAFPP 57

Query: 286 QP 291
           QP
Sbjct: 58  QP 59

 Score = 38.1 bits (87), Expect = 0.080
 Identities = 40/130 (30%), Positives = 52/130 (39%), Gaps = 9/130 (6%)
 Frame = +1

Query: 115 QPSAPPLGSGYPAAA-----APATGYPVIRPEEQQQQPARATFYPSIPSAGAGPSFSGSY 279
           QP A P G+GYP  A     AP  G+P   P+      A+   YP++P+AG      G  
Sbjct: 58  QPGAFPPGAGYPPQAGGYPAAPGGGFP---PQAGGYPAAQPGAYPNMPAAGGWGGHPGFG 114

Query: 280 APQPQMVDAADRGGDCVVPPRPRVRRAARAHDVRQLSAPGY---AQRAEAMGAVFVHHG- 447
           AP   M     +G   V  P  +   A     V     PGY   A       A  ++ G 
Sbjct: 115 APAGGM----PQGYPGVPAPGQQPMPAYPGAPVPNPGMPGYGGGAPTGPTPPAPAINRGF 170

Query: 448 RGAVLHRPGA 477
           RG +   PGA
Sbjct: 171 RGTIKDFPGA 180



EST assemble image


clone accession position
1 LC018a10_r AV620136 1 401
2 CM093a12_r AV393016 18 551




Chlamydomonas reinhardtii
Kazusa DNA Research Institute