Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001735A_C01 KCC001735A_c01
(523 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00005214.1| COG0388: Predicted amidohydrolase [Rhodobacte... 39 0.041
ref|ZP_00093862.1| COG0188: Type IIA topoisomerase (DNA gyrase/t... 36 0.26
pir||B34768 ORF5 protein - Orf virus (strain NZ2) gi|332564|gb|A... 36 0.34
sp|P14728|YAV2_XANCV Hypothetical 82 kDa avirulence protein in A... 36 0.34
sp|P11101|STP2_RAT NUCLEAR TRANSITION PROTEIN 2 (TP-2) gi|57378|... 34 1.0
>ref|ZP_00005214.1| COG0388: Predicted amidohydrolase [Rhodobacter sphaeroides]
Length = 402
Score = 38.9 bits (89), Expect = 0.041
Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = +2
Query: 272 WCWGRSSATASLSCTPTPLKTRTRAWSSTRWWASVRTCR-S*LSAPTQWHTSGSTRPQQA 448
WC R AT C +TR+R SS R S R+CR S W T P+++
Sbjct: 2 WCCRRRCATCCRICC----RTRSRWSSSPR---SPRSCRWPNFSTRPTWPGRSPTMPRRS 54
Query: 449 RSERWAAVLCS----GARAAAGASDRRE 520
S RW+ CS G+ AA A+ R E
Sbjct: 55 CSRRWSISCCSGRWCGSSAATSAASRPE 82
>ref|ZP_00093862.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
IV), A subunit [Novosphingobium aromaticivorans]
Length = 673
Score = 36.2 bits (82), Expect = 0.26
Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = +2
Query: 266 RAWCWGRSSATASLSCTPTPLKTRTRAWS-STRWWASVRTCRS*LSAPTQWHTSGSTR-- 436
R CW R + S PT + R S S RWW S+R RS S PT + +R
Sbjct: 569 RTSCWXRWTTGGSTRWGPTSCRARGALASLSGRWWTSIRMRRSFRSCPTSPRGNCCSRRT 628
Query: 437 PQQARSERW 463
P A RW
Sbjct: 629 PGAALPPRW 637
>pir||B34768 ORF5 protein - Orf virus (strain NZ2) gi|332564|gb|AAA46788.1| ORF5
Length = 351
Score = 35.8 bits (81), Expect = 0.34
Identities = 31/85 (36%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Frame = +3
Query: 258 GHDELGAGDAQAQRRHCPAPQLL*KREHAPGLQQDG--GHR*GHVGAD*ARLHSG----I 419
G + AG + RR PA + H P + DG GHR G V AD ARLH G
Sbjct: 71 GEGRVHAGGERVHRRERPAA--VRDHRHVPPVAADGQAGHRGGAVRADGARLHEGGRQRR 128
Query: 420 RAGLPAHNKQEVSAGQRCCALGPER 494
R G ++E QR A P R
Sbjct: 129 RRGAEEPAEEEAQRHQRERAEQPAR 153
>sp|P14728|YAV2_XANCV Hypothetical 82 kDa avirulence protein in AVRBS3 region
gi|77844|pir||JQ0317 hypothetical 82K protein -
Xanthomonas campestris pv. vesicatoria
Length = 784
Score = 35.8 bits (81), Expect = 0.34
Identities = 31/105 (29%), Positives = 37/105 (34%), Gaps = 30/105 (28%)
Frame = +2
Query: 266 RAWCW---GRSSATASLSCTPTPL--------KTRTRAWSST--------------RWWA 370
R W W G S T S +C P PL R AW ST W A
Sbjct: 367 RPWAWHSTGNSRCTVSSACLPPPLLAMATTCCGVRPWAWHSTGNSRCTVSSACLPPSWLA 426
Query: 371 SVRTCRS*LSAPTQWHTSGSTR---PQQARSERWAAV--LCSGAR 490
TC P WH++G++R W A+ CSG R
Sbjct: 427 MATTCSG--VRPWAWHSTGNSRCTVSSACLPPSWLAMATTCSGVR 469
Score = 34.3 bits (77), Expect = 1.0
Identities = 19/60 (31%), Positives = 24/60 (39%), Gaps = 3/60 (5%)
Frame = +2
Query: 266 RAWCW---GRSSATASLSCTPTPLKTRTRAWSSTRWWASVRTCRS*LSAPTQWHTSGSTR 436
R W W G S T S +C P PL S R WA WH++G++R
Sbjct: 571 RPWAWHSTGNSRCTVSSACLPPPLLAMATTCSGVRPWA--------------WHSTGNSR 616
Score = 33.9 bits (76), Expect = 1.3
Identities = 24/83 (28%), Positives = 30/83 (35%), Gaps = 8/83 (9%)
Frame = +2
Query: 266 RAWCW---GRSSATASLSCTPTPLKTRTRAWSSTRWWASVRTCRS*LSAPTQWHTSGSTR 436
R W W G S T S +C P PL R WA WH++G++R
Sbjct: 639 RPWAWHSTGNSRCTVSSACLPPPLLAMATTCCGVRPWA--------------WHSTGNSR 684
Query: 437 ---PQQARSERWAAV--LCSGAR 490
W A+ CSG R
Sbjct: 685 CTVSSACLPPSWLAMATTCSGVR 707
Score = 32.0 bits (71), Expect = 5.0
Identities = 30/105 (28%), Positives = 36/105 (33%), Gaps = 30/105 (28%)
Frame = +2
Query: 266 RAWCW---GRSSATASLSCTP--------TPLKTRTRAWSST--------------RWWA 370
R W W G S T S +C P T R AW ST W A
Sbjct: 197 RPWAWHSTGNSRCTVSSACLPPSWLAMATTCSGVRPWAWHSTGNSRCTVSSACLPPSWLA 256
Query: 371 SVRTCRS*LSAPTQWHTSGSTR---PQQARSERWAAV--LCSGAR 490
TC P WH++G++R W A+ CSG R
Sbjct: 257 MATTCSG--VRPWAWHSTGNSRCTVSSACLPPSWLAMATTCSGVR 299
Score = 31.2 bits (69), Expect = 8.5
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Frame = +2
Query: 266 RAWCW---GRSSATASLSCTPTPLKTRTRAWSSTRWWASVRTCRS*LSAPTQWHTSGSTR 436
R W W G S+ T S +C P L S R WA WH++G++R
Sbjct: 537 RPWAWHSTGNSACTVSSACLPPILLAMATTCSGVRPWA--------------WHSTGNSR 582
Score = 31.2 bits (69), Expect = 8.5
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Frame = +2
Query: 266 RAWCW---GRSSATASLSCTPTPLKTRTRAWSSTRWWASVRTCRS*LSAPTQWHTSGSTR 436
R W W G S+ T S +C P L S R WA WH++G++R
Sbjct: 333 RPWAWHSTGNSACTVSSACLPPLLLAMATTCSGVRPWA--------------WHSTGNSR 378
>sp|P11101|STP2_RAT NUCLEAR TRANSITION PROTEIN 2 (TP-2) gi|57378|emb|CAA32882.1|
unnamed protein product [Rattus norvegicus]
Length = 116
Score = 34.3 bits (77), Expect = 1.0
Identities = 34/104 (32%), Positives = 46/104 (43%), Gaps = 13/104 (12%)
Frame = -1
Query: 406 RRAQSAPTCPHRCPPSC*RPG-------ACSRF*RSWG-AGQ*RRCA*ASPAPSSS*PPG 251
RR ++ T PH P S RP ACS RS AG + SP P + P
Sbjct: 6 RRGRAPTTHPH--PHSSSRPQSHTNNQCACSHHCRSCSQAGHPSSSSSPSPGPPTKHPKT 63
Query: 250 PQTSSSSPWRLNHPG-----RGLSRAK*SRRKALFRKRQAQGSR 134
P S SP R +H G R K S+RKA+ R+++ ++
Sbjct: 64 PMHSRYSPSRPSHRGSCPKNRKTLEGKVSKRKAVRRRKRTHRAK 107
