KCC001731A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001731A_C01 KCC001731A_c01
gagaactagtctccgagtttttttttttttttttttctatggccagatcttacagttgtc
agtcaggcccgtcagagcgcGTGTTGTTGTGCTTTCATGGGCCGTTGCACCGCTTCACCA
TGCTCCAGCGCCCGGTGGCTTGCCCAGCGCCTGTGGCTTACCCAGGCCTTGCCTTGCAGT
TCGAACAAATGCATCTTAAAGCGATCATGAATCATGTCAGGAAGCATGCGCCGCAATCTG
CACGCGCCGATCTCCTCTTCCGCGTATTCGACCGTACCGTATCATATACTCAATCGCCCC
AACTGCAGCCAGTGCCGCGAGCCACGGTCTTGCACCAACGCACAGCAGCACAACAATGCC
AGTGGCTGCGCCATATGGTGGACCCGTCGCCGCAGCACCACTCATCTGCCATCCCCAGAA
AATGCCAAGCCAGACGAAGGTATGCGCACATTAAGTGCCGGAAACATGCTGGCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001731A_C01 KCC001731A_c01
         (474 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAH43787.1| Unknown (protein for MGC:53023) [Xenopus laevis]        39  0.024
dbj|BAC31912.1| unnamed protein product [Mus musculus]                 39  0.024
gb|AAL17912.1| intestinal mucin [Mamestra configurata]                 39  0.041
ref|NP_666194.1| hypothetical protein MGC38716 [Mus musculus] gi...    37  0.12
gb|AAQ08476.1| OTX5 protein [Crocodylus niloticus]                     36  0.20

>gb|AAH43787.1| Unknown (protein for MGC:53023) [Xenopus laevis]
          Length = 978

 Score = 39.3 bits (90), Expect = 0.024
 Identities = 29/127 (22%), Positives = 51/127 (39%), Gaps = 8/127 (6%)
 Frame = +2

Query: 92  LSWAVAPLHHAPAPGGLPSACGLPRPCLAVRTNAS*SDHESCQEACAAICTRRSPLPRIR 271
           L+   A L H P PG   +A  LP   +   T+             +++CT+R P+P I 
Sbjct: 547 LTGQTAVLSHWPRPGTPTAAVPLPNHIVKSETSTG-----------SSMCTQRLPIPAIT 595

Query: 272 PYRIIYSIAPTAASAASHGLAPTHSSTTMPVAAPYGGPVAAAPLICHPQKM--------P 427
           P     S  P++  +  +   P  +S     + P   P++    +  PQ +        P
Sbjct: 596 PPSSCTSPEPSSTLSRKNAQTPLGTSVKQHDSRPVSSPLSGTRALTPPQAVCDILTCAAP 655

Query: 428 SQTKVCA 448
             +++CA
Sbjct: 656 GASRLCA 662

>dbj|BAC31912.1| unnamed protein product [Mus musculus]
          Length = 537

 Score = 39.3 bits (90), Expect = 0.024
 Identities = 23/80 (28%), Positives = 39/80 (48%)
 Frame = +2

Query: 110 PLHHAPAPGGLPSACGLPRPCLAVRTNAS*SDHESCQEACAAICTRRSPLPRIRPYRIIY 289
           P  H P+  GLP+  G P P L+ RT +  +  ++    C     + +P P   P R   
Sbjct: 273 PSSHGPSQPGLPAVLGSPSPPLSPRTLSPPATRKTTSPPCQH--PQSNPAPGSPPVRRTE 330

Query: 290 SIAPTAASAASHGLAPTHSS 349
           +  P++AS +S  ++P+  S
Sbjct: 331 TNTPSSASCSSPSVSPSRGS 350

>gb|AAL17912.1| intestinal mucin [Mamestra configurata]
          Length = 811

 Score = 38.5 bits (88), Expect = 0.041
 Identities = 20/50 (40%), Positives = 24/50 (48%)
 Frame = +2

Query: 296 APTAASAASHGLAPTHSSTTMPVAAPYGGPVAAAPLICHPQKMPSQTKVC 445
           APTAA  A+   APT + T  P AAP   P AA P+   P    +    C
Sbjct: 157 APTAAPTAAPTAAPTAAPTAAPTAAPTAAPTAAPPVTSDPDDCETLDNGC 206

 Score = 33.9 bits (76), Expect = 1.0
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +2

Query: 296 APTAASAASHGLAPTHSSTTMPVAAPYGGPVAA 394
           APTAA  A+   APT + T  P AAP   P AA
Sbjct: 113 APTAAPTAAPTAAPTAAPTAAPTAAPTAAPTAA 145

 Score = 33.9 bits (76), Expect = 1.0
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +2

Query: 296 APTAASAASHGLAPTHSSTTMPVAAPYGGPVAA 394
           APTAA  A+   APT + T  P AAP   P AA
Sbjct: 133 APTAAPTAAPTAAPTAAPTAAPTAAPTAAPTAA 165

 Score = 33.9 bits (76), Expect = 1.0
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +2

Query: 296 APTAASAASHGLAPTHSSTTMPVAAPYGGPVAA 394
           APTAA  A+   APT + T  P AAP   P AA
Sbjct: 121 APTAAPTAAPTAAPTAAPTAAPTAAPTAAPTAA 153

 Score = 33.9 bits (76), Expect = 1.0
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +2

Query: 296 APTAASAASHGLAPTHSSTTMPVAAPYGGPVAA 394
           APTAA  A+   APT + T  P AAP   P AA
Sbjct: 125 APTAAPTAAPTAAPTAAPTAAPTAAPTAAPTAA 157

 Score = 33.9 bits (76), Expect = 1.0
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +2

Query: 296 APTAASAASHGLAPTHSSTTMPVAAPYGGPVAA 394
           APTAA  A+   APT + T  P AAP   P AA
Sbjct: 129 APTAAPTAAPTAAPTAAPTAAPTAAPTAAPTAA 161

 Score = 33.9 bits (76), Expect = 1.0
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +2

Query: 296 APTAASAASHGLAPTHSSTTMPVAAPYGGPVAA 394
           APTAA  A+   APT + T  P AAP   P AA
Sbjct: 117 APTAAPTAAPTAAPTAAPTAAPTAAPTAAPTAA 149

 Score = 33.9 bits (76), Expect = 1.0
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +2

Query: 296 APTAASAASHGLAPTHSSTTMPVAAPYGGPVAA 394
           APTAA  A+   APT + T  P AAP   P AA
Sbjct: 137 APTAAPTAAPTAAPTAAPTAAPTAAPTAAPTAA 169

 Score = 33.9 bits (76), Expect = 1.0
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +2

Query: 296 APTAASAASHGLAPTHSSTTMPVAAPYGGPVAA 394
           APTAA  A+   APT + T  P AAP   P AA
Sbjct: 141 APTAAPTAAPTAAPTAAPTAAPTAAPTAAPTAA 173

 Score = 33.9 bits (76), Expect = 1.0
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +2

Query: 296 APTAASAASHGLAPTHSSTTMPVAAPYGGPVAA 394
           APTAA  A+   APT + T  P AAP   P AA
Sbjct: 145 APTAAPTAAPTAAPTAAPTAAPTAAPTAAPTAA 177

 Score = 33.9 bits (76), Expect = 1.0
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +2

Query: 296 APTAASAASHGLAPTHSSTTMPVAAPYGGPVAA 394
           APTAA  A+   APT + T  P AAP   P AA
Sbjct: 149 APTAAPTAAPTAAPTAAPTAAPTAAPTAAPTAA 181

 Score = 33.9 bits (76), Expect = 1.0
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +2

Query: 296 APTAASAASHGLAPTHSSTTMPVAAPYGGPVAA 394
           APTAA  A+   APT + T  P AAP   P AA
Sbjct: 153 APTAAPTAAPTAAPTAAPTAAPTAAPTAAPTAA 185

 Score = 33.9 bits (76), Expect = 1.0
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +2

Query: 296 APTAASAASHGLAPTHSSTTMPVAAPYGGPVAA 394
           APTAA  A+   APT + T  P AAP   P AA
Sbjct: 109 APTAAPTAAPTAAPTAAPTAAPTAAPTAAPTAA 141

 Score = 33.9 bits (76), Expect = 1.0
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +2

Query: 296 APTAASAASHGLAPTHSSTTMPVAAPYGGPVAA 394
           APTAA  A+   APT + T  P AAP   P AA
Sbjct: 105 APTAAPTAAPTAAPTAAPTAAPTAAPTAAPTAA 137

>ref|NP_666194.1| hypothetical protein MGC38716 [Mus musculus]
           gi|20072554|gb|AAH27072.1| Hypothetical protein MGC38716
           [Mus musculus]
          Length = 516

 Score = 37.0 bits (84), Expect = 0.12
 Identities = 22/80 (27%), Positives = 38/80 (47%)
 Frame = +2

Query: 110 PLHHAPAPGGLPSACGLPRPCLAVRTNAS*SDHESCQEACAAICTRRSPLPRIRPYRIIY 289
           P  H P+  GLP+    P P L+ RT +  +  ++    C     + +P P   P R   
Sbjct: 252 PSSHGPSQPGLPAVLSSPSPPLSPRTLSPPATRKTTSPPCQH--PQSNPAPGSPPVRRTE 309

Query: 290 SIAPTAASAASHGLAPTHSS 349
           +  P++AS +S  ++P+  S
Sbjct: 310 TNTPSSASCSSPSVSPSRGS 329

>gb|AAQ08476.1| OTX5 protein [Crocodylus niloticus]
          Length = 271

 Score = 36.2 bits (82), Expect = 0.20
 Identities = 33/101 (32%), Positives = 44/101 (42%), Gaps = 4/101 (3%)
 Frame = +2

Query: 125 PAPGGLPSACGLPRPCLAVRTNAS*SDHESCQEACAAICTRRSPLPRIRPYRIIYSIAP- 301
           P P G PS+   P   +++ + AS S       + AA C     LPR  PY + YS AP 
Sbjct: 121 PGPAGTPSSA--PGATVSIWSPASISPIPDPLASSAAPC-----LPRSAPYAMTYSQAPG 173

Query: 302 ---TAASAASHGLAPTHSSTTMPVAAPYGGPVAAAPLICHP 415
              + A + S+      SS   P+  P G P AA   I  P
Sbjct: 174 YGQSYAGSGSYFSGLDCSSYLSPMHPPLGAPGAALSPIAAP 214



EST assemble image


clone accession position
1 LCL099f09_r AV631778 1 461
2 CM087e05_r AV392424 125 474




Chlamydomonas reinhardtii
Kazusa DNA Research Institute