KCC001730A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001730A_C01 KCC001730A_c01
CGGCTTCCTAACGAAAATATTTCACGATGTCTGAGGATCTTGCCTCAGCACGTATTCATC
AAGTATGCATCGATCGGCAAGACAGGGATCACGCTGGCCAACGCGCACGCTGGATGGGTC
AAAGTTTGCGAAACTATGTCGCGGAGAGCAAGTTGATTGGCGGGGGCCTCACGCCCATGG
ACGTGGAGGGCATATTCTTGCGTGTCAGCAAAAGCTTCGGAAGAATCAACTACGACACCT
TCCTGCTCGCGCTGGAGGAGATTGCGGCCAAGAAGCGTGTGTCTGTGGACACGCTGTTTG
GGCGGCTGGCCGACGCCGACCCCCTGGCCGCCACCACCAAGGCCGAGTACGTGCGACACC
ACGATGACAAGAGTACCTACACTGGCGTGTACCGGGCAGGGGGCCCGCGCAATCTGGCGG
GCGCACGGTAGCAGCGCTCATTCTGTGGGTTTGTCAGCTTCGACGCTGTGGGCTGTGAAC
TACACCGTTTCGTT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001730A_C01 KCC001730A_c01
         (494 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|EAA17578.1| Tetrahymena thermophila Igr3p [Plasmodium yoelii ...    67  2e-10
ref|NP_701716.1| hypothetical protein [Plasmodium falciparum 3D7...    65  5e-10
gb|AAL79509.1| Igr3p [Tetrahymena thermophila]                         64  1e-09
gb|AAL79503.1| Igr4p [Tetrahymena thermophila]                         46  2e-04
ref|XP_140035.2| hypothetical protein XP_140035 [Mus musculus]         42  0.005

>gb|EAA17578.1| Tetrahymena thermophila Igr3p [Plasmodium yoelii yoelii]
          Length = 141

 Score = 66.6 bits (161), Expect = 2e-10
 Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
 Frame = +3

Query: 144 ESKLIGGGLTPMDVEGIFLRV-SKSFGRINYDTFLLALEEIAAKKRVSVDTLFGRL---A 311
           +SKL+   +T +D +  F RV ++   RI YD F+ A++ I  K ++  D    +L   A
Sbjct: 15  DSKLLNKKITAVDADITFARVKTQGSKRIKYDQFVEAIKYITEKNKLDYDQFVEQLCNEA 74

Query: 312 DADPLAATTKAEYVRHHDDKSTYTGVYRAGGPRNL 416
              P+   TKAE  R HDDKSTYTGV++ GGP  +
Sbjct: 75  SNGPILYGTKAEATRFHDDKSTYTGVHKLGGPTTI 109

>ref|NP_701716.1| hypothetical protein [Plasmodium falciparum 3D7]
           gi|23496888|gb|AAN36440.1|AE014850_5 hypothetical
           protein PFL1770c [Plasmodium falciparum 3D7]
          Length = 152

 Score = 65.1 bits (157), Expect = 5e-10
 Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
 Frame = +3

Query: 144 ESKLIGGGLTPMDVEGIFLRV-SKSFGRINYDTFLLALEEIAAKKRVSVDTLFGRL---A 311
           ++KL+    T +D + IF +V SK   RINYD FL A++ I  K +++ D     L   A
Sbjct: 26  DAKLLNKKFTTVDADLIFAKVKSKGAKRINYDQFLEAVKCIVEKNKLNYDKFVETLCQEA 85

Query: 312 DADPLAATTKAEYVRHHDDKSTYTGVYRAGGP 407
              P+   TK E VR  DDKST+TGV++ GGP
Sbjct: 86  SKGPILYGTKTENVRFFDDKSTFTGVHKQGGP 117

>gb|AAL79509.1| Igr3p [Tetrahymena thermophila]
          Length = 149

 Score = 63.9 bits (154), Expect = 1e-09
 Identities = 39/119 (32%), Positives = 62/119 (51%), Gaps = 3/119 (2%)
 Frame = +3

Query: 60  QVCIDRQDRDHAGQRARWMGQSLRNYVAESKLIGGGLTPMDVEGIFLRV--SKSFGRINY 233
           Q  ++   +     +A   G++   +  +  L+   LT  D++ IF +V  S +   I +
Sbjct: 2   QASLEGVFKKFTANKADMDGKTFAKFAKDCGLLDKKLTATDIDLIFAKVKTSSAVRTITF 61

Query: 234 DTFLLALEEIAAKKRVSVDTLFGRLADAD-PLAATTKAEYVRHHDDKSTYTGVYRAGGP 407
             F   L+++A KK +S+D L  ++  A  P    TKA+ V+ HDDKS YTGVY  GGP
Sbjct: 62  AQFEKGLDQMATKKGISLDALKEKVTSAGGPTFTGTKADAVKFHDDKSLYTGVYANGGP 120

>gb|AAL79503.1| Igr4p [Tetrahymena thermophila]
          Length = 133

 Score = 46.2 bits (108), Expect = 2e-04
 Identities = 29/95 (30%), Positives = 45/95 (46%), Gaps = 2/95 (2%)
 Frame = +3

Query: 138 VAESKLIGGGLTPMDVEGIFLRVSKSFGR--INYDTFLLALEEIAAKKRVSVDTLFGRLA 311
           + +S +  G + P   E IF +V  S     INY  F   L +IAA+  ++   + G L 
Sbjct: 15  LTDSGVFNGRVNPSQAEYIFDKVKNSANLRGINYQQFETCLSQIAAQGGMTRQQIEGMLI 74

Query: 312 DADPLAATTKAEYVRHHDDKSTYTGVYRAGGPRNL 416
           +        + +  R   DKS+YTGV+  GGP  +
Sbjct: 75  EQSKKLGAKEGDPSRFFYDKSSYTGVHTKGGPSTI 109

>ref|XP_140035.2| hypothetical protein XP_140035 [Mus musculus]
          Length = 162

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 35/112 (31%), Positives = 45/112 (39%), Gaps = 4/112 (3%)
 Frame = +1

Query: 148 AS*LAGASRPWTWRAYSCVSAKASEESTTTPSCSRWRRLRPRSVCLWTRCLGGWPTPT-- 321
           AS  A AS  W  R  +C SA+AS   T     + WRR R      WT     W +PT  
Sbjct: 48  ASPSASASPAWRLRTRTCASARASSPRTRA-WMTTWRRERACISRTWTFASSWWLSPTRL 106

Query: 322 --PWPPPPRPSTCDTTMTRVPTLACTGQGARAIWRAHGSSAHSVGLSASTLW 471
             P  P  RPS       R P   C G+   A W +      ++   +S +W
Sbjct: 107 GRPGTPARRPS------GRQPCSRCPGR--CACWPSTARRMRTITWKSSLVW 150



EST assemble image


clone accession position
1 CM087d09_r AV392466 1 594
2 MX028g06_r BP087240 68 558
3 MX237h11_r BP091386 68 419




Chlamydomonas reinhardtii
Kazusa DNA Research Institute