KCC001728A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001728A_C01 KCC001728A_c01
CCCAGATGTATTCACCTTTACGGCTTGTATTTACAGTATTGTGTATCGCATACAGCCCAC
GGCATGCATCGTCATATAGTACATATGATGGGGCCCAAGGCCCTGATTCCCGGCTTTGGC
CAATAGATGTACAAAAAATACACGAGGTTGTAAGAGAAGTTTGCACATGCAACAAATGAC
CCGTACAATCATGCTAGCGTAAATCGGATTGCCCTAAGCATGGAACGAATTATGCAATAT
GCACAGCAGCGATCACGGTTTCTTTTCATTGGTGAGCATGGTAATGGAATTTTACCTTCT
ATAATTTCTTTGCTTCTCGATCCGAGCTGGATACAAGTCACCACATGGGATGCGCCGTCC
GGTCGCCATAAAGTTATTCCCAACCTCGCAAATGGGTGGTTTTCACTCCGAATTCGCAAT
CACACATTCGAATATCCACTATTTAAGCATGACGTGGAACAAGAACCGATACCATTACCG
TCCGCCTCCATTGACTATGTTATTATGTTCCATGTTCTTGAACATTTAAGCCTTGATCCA
ATGTTGGGTATCTTAGAAATTCATCGTGTTCTTCGACCTGGCGGCATATTATTTTTATCA
ACGCCAAATTTAGGTAGCCTGAGAGGCATTGCTCAAATGCTGCATGGGAATTCGCCGCAT
TCATACCACAAGTTTCTTTTCCGACGCCGGCATTCGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001728A_C01 KCC001728A_c01
         (698 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00020252.1| hypothetical protein [Chloroflexus aurantiacus]     57  4e-07
ref|NP_826910.1| hypothetical protein [Streptomyces avermitilis ...    54  3e-06
ref|ZP_00129691.1| COG0500: SAM-dependent methyltransferases [De...    49  1e-04
ref|ZP_00017926.1| hypothetical protein [Chloroflexus aurantiacus]     47  2e-04
ref|NP_386769.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium m...    47  4e-04

>ref|ZP_00020252.1| hypothetical protein [Chloroflexus aurantiacus]
          Length = 246

 Score = 56.6 bits (135), Expect = 4e-07
 Identities = 23/53 (43%), Positives = 37/53 (69%)
 Frame = +1

Query: 451 DVEQEPIPLPSASIDYVIMFHVLEHLSLDPMLGILEIHRVLRPGGILFLSTPN 609
           ++E+EP+P P  S D+V+   V+EH+   P+  + E +RVLRPGG + ++TPN
Sbjct: 145 NLEREPLPYPDTSFDWVVFSEVIEHMVYSPLPILREFYRVLRPGGRVLITTPN 197

>ref|NP_826910.1| hypothetical protein [Streptomyces avermitilis MA-4680]
           gi|29609395|dbj|BAC73445.1| hypothetical protein
           [Streptomyces avermitilis MA-4680]
          Length = 244

 Score = 53.5 bits (127), Expect = 3e-06
 Identities = 31/63 (49%), Positives = 39/63 (61%)
 Frame = +1

Query: 469 IPLPSASIDYVIMFHVLEHLSLDPMLGILEIHRVLRPGGILFLSTPNLGSLRGIAQMLHG 648
           +P  SA+ D V+   V+EHL +DP   + EI RVLRPGG L LSTPNL +    A +L G
Sbjct: 103 LPFASATADAVLFSEVIEHL-VDPDGALDEIRRVLRPGGHLMLSTPNLAAWYNRALLLAG 161

Query: 649 NSP 657
             P
Sbjct: 162 VQP 164

>ref|ZP_00129691.1| COG0500: SAM-dependent methyltransferases [Desulfovibrio
           desulfuricans G20]
          Length = 764

 Score = 48.5 bits (114), Expect = 1e-04
 Identities = 34/74 (45%), Positives = 42/74 (55%), Gaps = 4/74 (5%)
 Frame = +1

Query: 469 IPLPSASIDYVIMFHVLEHLSLDPMLGILEIHRVLRPGGILFLSTPNLGSLRGIAQ---- 636
           IP P AS D V+   VLEH+  DP   + E+ R+LRPGG L L+ P LGS  G+ Q    
Sbjct: 615 IPAPDASFDVVLCTEVLEHVP-DPAAALREMVRLLRPGGRLLLTAP-LGS--GLHQEPFH 670

Query: 637 MLHGNSPHSYHKFL 678
              G + H Y KFL
Sbjct: 671 YYGGFTRHFYEKFL 684

 Score = 43.1 bits (100), Expect = 0.004
 Identities = 28/78 (35%), Positives = 41/78 (51%), Gaps = 11/78 (14%)
 Frame = +1

Query: 430 EYPLFKHDV---------EQEPIPLPSASIDYVIMFHVLEHLSLDPMLGIL-EIHRVLRP 579
           +YP  +H V         E + +  P  S+D + + HV EH +    LG+L   HR LR 
Sbjct: 319 DYPQDRHAVMRTKADICAEIKQLRFPDNSVDEIRLHHVFEHFNRVEALGLLVRWHRWLRT 378

Query: 580 GGILFLSTPNL-GSLRGI 630
           GG+L + TP+L GS R +
Sbjct: 379 GGVLHIETPDLEGSARTV 396

>ref|ZP_00017926.1| hypothetical protein [Chloroflexus aurantiacus]
          Length = 163

 Score = 47.4 bits (111), Expect = 2e-04
 Identities = 23/46 (50%), Positives = 31/46 (67%)
 Frame = +1

Query: 469 IPLPSASIDYVIMFHVLEHLSLDPMLGILEIHRVLRPGGILFLSTP 606
           +P PSA  D +I   VLEHL   P + + E+HR+LRPGG L+L+ P
Sbjct: 44  LPFPSAYFDAIICTQVLEHLP-KPQIALGELHRLLRPGGKLWLTAP 88

>ref|NP_386769.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
           gi|15075687|emb|CAC47242.1| CONSERVED HYPOTHETICAL
           PROTEIN [Sinorhizobium meliloti]
          Length = 254

 Score = 46.6 bits (109), Expect = 4e-04
 Identities = 32/65 (49%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = +1

Query: 454 VEQEPIPLPSASIDYVIMFHVLEHLSLDPMLGILEIHRVLRPGGILFLSTPNLGSLRGI- 630
           V  E +PLP ASID V+M H LE  +  P   + EI RVL PGG L +  PN    RG+ 
Sbjct: 87  VFDEELPLPDASIDRVLMVHSLE-FAESPRETMKEIWRVLAPGGRLIIVVPN---RRGVW 142

Query: 631 AQMLH 645
           AQM H
Sbjct: 143 AQMEH 147



EST assemble image


clone accession position
1 HC054c05_r AV636030 1 424
2 MX041g07_r BP087702 84 544
3 HC066b05_r AV636923 91 510
4 HC024f12_r AV633743 91 627
5 HC024f11_r AV633742 91 615
6 MX257a05_r BP092637 102 487
7 MX213c07_r BP089747 118 517
8 CM087a09_r AV392487 244 808
9 LC046c06_r AV622184 262 735




Chlamydomonas reinhardtii
Kazusa DNA Research Institute