KCC001719A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001719A_C01 KCC001719A_c01
gccggttgtcggatcccgtcgtcacccgcattgagaagcgtatctcgttgtGGACCCACC
TGCCCGTCGAGCATCAGGAGGACATTCAGATTCTGCGCTACGCGCACGGCCAGACCTACG
GAGCCCACTACGACTCCGGGGCCTCGAGCGACCACGTGGGCCCAAAGTGGCGCCTGGCCA
CCTTCCTCATGTACCTGTCTGACGTGGAGGAGGGCGGCGAGACTGCTTTCCCGCACAACT
CCGTCTGGGCGGACCCCTCAATTCCTGAGCAGGTTGGCGACAAGTTCTCTGACTGCGCCA
AGGGCCATGTGGCTGCCAAGCCCAAGGCCGGCGATGCCGTGCTTTTCTACTCTTTCTACC
CAAACAACACCATGGACCCTGCGTCCATGCACACCGGCTGCCCGGTGATCAAGGGCGTGA
AGTGGGCTGCGCCCGTGTGGATGCACGACATTCCTTTCAGGCCCGAGGAGATTAGCGGTA
TGACGCAGCACAACATGGACCGTGACCCTGACGCCGGCACCTGCACGGACCTACACGCTC
GCTGCACCGAGTGGGCGGCCGCCGGCGAGTGCGAGAACAACAAGGCGTACATGTGCGGCG
GCAGCAACAACCTGGGCGCGTGCCGCAAGTCGTGCAAAGTGTGCGAGTCGTGCCGCTCTG
GGGATATGGAGTGCATCAATCGCAACCGCGTGCGCGGCGGCTACTGGAAGCTCGATAAGG
ACGAGCTGGAGTGGCTGGGCGCTGGTGACCTGTGGAAGGCCGACATGTCGCCGGAGCTCT
AAATAGGCGGCAGGACAAGCCGCGTTAGCGCTCGCACCAGGAGCTAATAGCAAATTAGGC
AGATGGGCGGACCGGCGTGTGTCGGGTCACATACAACCTGGGCCGCCAGTGGTGCTTATG
TTCGGCGGGTCAAAGGTAACCTGGCGCAGGAAGCAGGCGCTCGTATCCGGCGGGCCTCGC
GCTGCATGCAGCAAGCGTGGCTGGCTGGCCAGGTGCATGCAGCTGGGGAAACT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001719A_C01 KCC001719A_c01
         (1013 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC83179.1| prolyl 4-hydroxylase alpha-1 subunit precursor-l...   191  2e-47
gb|AAO72374.1| putative oxidoreductase [Oryza sativa (japonica c...   184  3e-45
gb|AAM13038.1| unknown protein [Arabidopsis thaliana] gi|2213652...   183  4e-45
ref|NP_197391.1| oxidoreductase, 2OG-Fe(II) oxygenase family [Ar...   183  4e-45
gb|AAO72377.1| putative oxidoreductase [Oryza sativa (japonica c...   181  1e-44

>dbj|BAC83179.1| prolyl 4-hydroxylase alpha-1 subunit precursor-like protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 313

 Score =  191 bits (485), Expect = 2e-47
 Identities = 102/219 (46%), Positives = 129/219 (58%), Gaps = 6/219 (2%)
 Frame = +3

Query: 12  DPVVTRIEKRISLWTHLPVEHQEDIQILRYAHGQTYGAHYD------SGASSDHVGPKWR 173
           DPVV+RIEKRI+ WT LP E+ E+IQILRY HGQ Y  H+D      + A   H     R
Sbjct: 114 DPVVSRIEKRIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKVNQALGGH-----R 168

Query: 174 LATFLMYLSDVEEGGETAFPHNSVWADPSIPEQVGDKFSDCAKGHVAAKPKAGDAVLFYS 353
            AT LMYLS VE+GGET FP+   W +    +   D FS+CA+  +A KP  GD VLF+S
Sbjct: 169 YATVLMYLSTVEKGGETVFPNAEGWEN----QPKDDTFSECAQKGLAVKPVKGDTVLFFS 224

Query: 354 FYPNNTMDPASMHTGCPVIKGVKWAAPVWMHDIPFRPEEISGMTQHNMDRDPDAGTCTDL 533
            + +   DP S+H  CPVI+G KW+AP W+    +    +S +T+           C+D 
Sbjct: 225 LHIDGVPDPLSLHGSCPVIEGEKWSAPKWIRIRSYEHPPVSKVTE----------GCSDN 274

Query: 534 HARCTEWAAAGECENNKAYMCGGSNNLGACRKSCKVCES 650
            ARC +WA AGECE N  YM G     G CRKSC VC+S
Sbjct: 275 SARCAKWAEAGECEKNPVYMVGAEGLPGNCRKSCGVCDS 313

>gb|AAO72374.1| putative oxidoreductase [Oryza sativa (japonica cultivar-group)]
          Length = 299

 Score =  184 bits (466), Expect = 3e-45
 Identities = 97/217 (44%), Positives = 131/217 (59%), Gaps = 4/217 (1%)
 Frame = +3

Query: 12  DPVVTRIEKRISLWTHLPVEHQEDIQILRYAHGQTYGAHYDSGASSDHVGPKW-RLATFL 188
           D +V+ IEKR++ WT LP E+ E IQIL Y  GQ Y AH+D     +++     R+AT L
Sbjct: 100 DDIVSGIEKRVAAWTFLPEENAESIQILHYELGQKYDAHFDYFHDKNNLKRGGHRVATVL 159

Query: 189 MYLSDVEEGGETAFPHNSVWADPSIPEQVGDKFSDCAKGHVAAKPKAGDAVLFYSFYPNN 368
           MYL+DV++GGET FP N+      + ++    +SDCA+  +A KPK GDA+LF+S + N 
Sbjct: 160 MYLTDVKKGGETVFP-NAAGRHLQLKDET---WSDCARSGLAVKPKKGDALLFFSLHVNA 215

Query: 369 TMDPASMHTGCPVIKGVKWAAPVWMHDIPFRPEEISGMTQHNMDRDPDAG---TCTDLHA 539
           T DPAS+H  CPVI+G KW+A  W+H               + D  PD      C+D + 
Sbjct: 216 TTDPASLHGSCPVIEGEKWSATKWIH-------------VRSFDNPPDVSLDLPCSDENE 262

Query: 540 RCTEWAAAGECENNKAYMCGGSNNLGACRKSCKVCES 650
           RCT WAA GEC  N  YM G  ++LG CRKSC VC++
Sbjct: 263 RCTRWAAVGECYRNPKYMVGTKDSLGFCRKSCGVCDA 299

>gb|AAM13038.1| unknown protein [Arabidopsis thaliana] gi|22136524|gb|AAM91340.1|
           unknown protein [Arabidopsis thaliana]
          Length = 298

 Score =  183 bits (465), Expect = 4e-45
 Identities = 97/213 (45%), Positives = 126/213 (58%), Gaps = 2/213 (0%)
 Frame = +3

Query: 12  DPVVTRIEKRISLWTHLPVEHQEDIQILRYAHGQTYGAHYDSGASSDH-VGPKWRLATFL 188
           DP+V+ IE +IS WT LP E+ EDIQ+LRY HGQ Y AH+D      + V    R+AT L
Sbjct: 100 DPIVSGIEDKISTWTFLPKENGEDIQVLRYEHGQKYDAHFDYFHDKVNIVRGGHRMATIL 159

Query: 189 MYLSDVEEGGETAFPHNSVWADPSIPEQVGDKFSDCAKGHVAAKPKAGDAVLFYSFYPNN 368
           MYLS+V +GGET FP   + +   + E   D  SDCAK  +A KP+ GDA+LF++ +P+ 
Sbjct: 160 MYLSNVTKGGETVFPDAEIPSRRVLSENEED-LSDCAKRGIAVKPRKGDALLFFNLHPDA 218

Query: 369 TMDPASMHTGCPVIKGVKWAAPVWMHDIPFRPEEISGMTQHNMDR-DPDAGTCTDLHARC 545
             DP S+H GCPVI+G KW+A  W+H   F             DR    +G CTD++  C
Sbjct: 219 IPDPLSLHGGCPVIEGEKWSATKWIHVDSF-------------DRIVTPSGNCTDMNESC 265

Query: 546 TEWAAAGECENNKAYMCGGSNNLGACRKSCKVC 644
             WA  GEC  N  YM G +   G CR+SCK C
Sbjct: 266 ERWAVLGECTKNPEYMVGTTELPGYCRRSCKAC 298

>ref|NP_197391.1| oxidoreductase, 2OG-Fe(II) oxygenase family [Arabidopsis thaliana]
           gi|21593296|gb|AAM65245.1| prolyl 4-hydroxylase alpha
           subunit-like protein [Arabidopsis thaliana]
          Length = 298

 Score =  183 bits (465), Expect = 4e-45
 Identities = 97/213 (45%), Positives = 126/213 (58%), Gaps = 2/213 (0%)
 Frame = +3

Query: 12  DPVVTRIEKRISLWTHLPVEHQEDIQILRYAHGQTYGAHYDSGASSDH-VGPKWRLATFL 188
           DP+V+ IE +IS WT LP E+ EDIQ+LRY HGQ Y AH+D      + V    R+AT L
Sbjct: 100 DPIVSGIEDKISTWTFLPKENGEDIQVLRYEHGQKYDAHFDYFHDKVNIVRGGHRMATIL 159

Query: 189 MYLSDVEEGGETAFPHNSVWADPSIPEQVGDKFSDCAKGHVAAKPKAGDAVLFYSFYPNN 368
           MYLS+V +GGET FP   + +   + E   D  SDCAK  +A KP+ GDA+LF++ +P+ 
Sbjct: 160 MYLSNVTKGGETVFPDAEIPSRRVLSENKED-LSDCAKRGIAVKPRKGDALLFFNLHPDA 218

Query: 369 TMDPASMHTGCPVIKGVKWAAPVWMHDIPFRPEEISGMTQHNMDR-DPDAGTCTDLHARC 545
             DP S+H GCPVI+G KW+A  W+H   F             DR    +G CTD++  C
Sbjct: 219 IPDPLSLHGGCPVIEGEKWSATKWIHVDSF-------------DRIVTPSGNCTDMNESC 265

Query: 546 TEWAAAGECENNKAYMCGGSNNLGACRKSCKVC 644
             WA  GEC  N  YM G +   G CR+SCK C
Sbjct: 266 ERWAVLGECTKNPEYMVGTTELPGYCRRSCKAC 298

>gb|AAO72377.1| putative oxidoreductase [Oryza sativa (japonica cultivar-group)]
          Length = 310

 Score =  181 bits (460), Expect = 1e-44
 Identities = 96/212 (45%), Positives = 124/212 (58%), Gaps = 1/212 (0%)
 Frame = +3

Query: 12  DPVVTRIEKRISLWTHLPVEHQEDIQILRYAHGQTYGAHYDSGASS-DHVGPKWRLATFL 188
           DPVV+ IE+RI+ WT LP E+ E+IQILRY +GQ Y  H+D      + +    R AT L
Sbjct: 111 DPVVSGIEERIAAWTLLPQENAENIQILRYENGQKYDPHFDYFQDKVNQLQGGHRYATVL 170

Query: 189 MYLSDVEEGGETAFPHNSVWADPSIPEQVGDKFSDCAKGHVAAKPKAGDAVLFYSFYPNN 368
            YLS VE+GGET FP+   W      +   D FSDCAK  +A K   GD+VLF++  P+ 
Sbjct: 171 TYLSTVEKGGETVFPNAEGWES----QPKDDSFSDCAKKGLAVKAVKGDSVLFFNLQPDG 226

Query: 369 TMDPASMHTGCPVIKGVKWAAPVWMHDIPFRPEEISGMTQHNMDRDPDAGTCTDLHARCT 548
           T DP S+H  CPVI+G KW+AP W+H   +  +  S M Q        +  C+DL   C 
Sbjct: 227 TPDPLSLHGSCPVIEGEKWSAPKWIHVRSY--DNASSMKQ--------SEECSDLSENCA 276

Query: 549 EWAAAGECENNKAYMCGGSNNLGACRKSCKVC 644
            WAA+GEC NN  YM G  +  G C+KSC  C
Sbjct: 277 AWAASGECNNNAVYMIGTEDAPGQCQKSCNAC 308



EST assemble image


clone accession position
1 HC006c08_r AV632284 1 486
2 HC022h01_r AV633603 52 423
3 CM085a11_r AV392392 332 800
4 HC070b01_r AV637202 484 1013




Chlamydomonas reinhardtii
Kazusa DNA Research Institute