Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001704A_C01 KCC001704A_c01
(626 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB90507.1| putative U2 snRNP auxiliary factor [Oryza sativa... 261 8e-69
ref|NP_174086.1| splicing factor U2AF small subunit, putative [A... 257 5e-68
gb|AAL06331.1|AF409139_1 U2 auxiliary factor small subunit [Arab... 257 1e-67
ref|NP_199096.1| splicing factor U2AF small subunit, putative [A... 255 2e-67
emb|CAA77132.1| U2 snRNP auxiliary factor, small subunit [Oryza ... 253 8e-67
>dbj|BAB90507.1| putative U2 snRNP auxiliary factor [Oryza sativa (japonica
cultivar-group)]
Length = 701
Score = 261 bits (666), Expect = 8e-69
Identities = 123/167 (73%), Positives = 138/167 (81%)
Frame = +3
Query: 114 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTILMANMYQNPLLNAP 293
MAEHLASIFGTEKD+VNCPFYFKIGACRHGDRCS LHNRPTISPT++ ANMYQ P + P
Sbjct: 1 MAEHLASIFGTEKDKVNCPFYFKIGACRHGDRCSCLHNRPTISPTVVFANMYQRPDMITP 60
Query: 294 LGPDGLPIRVDPRAAQEHFEDFYEDVFEELAAHGELENLNVCDNFDDHMVGNVYAKFRDE 473
G D +DPR QEHFEDFYED+FEEL+ GE+ENLNVCDN DHM+GNVY +FR+E
Sbjct: 61 -GVDAQGQPIDPRQMQEHFEDFYEDIFEELSKFGEIENLNVCDNLADHMIGNVYVQFREE 119
Query: 474 DAAARALTALQGRYYDGRPIIVEFSPVTDFREATCRPYEDNRAIAEA 614
D AA A TALQGR+Y GRPIIV+FSPVTDFREATCR YE+N E+
Sbjct: 120 DQAAAAHTALQGRFYSGRPIIVDFSPVTDFREATCRQYEENSCNRES 166
>ref|NP_174086.1| splicing factor U2AF small subunit, putative [Arabidopsis thaliana]
gi|5668775|gb|AAD46002.1|AC005916_14 Strong similarity
to gb|Y18349 U2 snRNP auxiliary factor, small subunit
from Oryza sativa. ESTs gb|AA586295 and gb|AA597332
come from this gene. [Arabidopsis thaliana]
gi|6693017|gb|AAF24943.1|AC012375_6 T22C5.10
[Arabidopsis thaliana]
gi|12744991|gb|AAK06875.1|AF344324_1 putative U2 snRNP
auxiliary factor [Arabidopsis thaliana]
gi|17528936|gb|AAL38678.1| putative U2 snRNP auxiliary
factor [Arabidopsis thaliana] gi|19699275|gb|AAL91249.1|
At1g27650/T22C5_2 [Arabidopsis thaliana]
gi|20465943|gb|AAM20157.1| putative U2 snRNP auxiliary
factor protein [Arabidopsis thaliana]
gi|21595106|gb|AAM66073.1| putative U2 snRNP auxiliary
factor [Arabidopsis thaliana] gi|21689611|gb|AAM67427.1|
At1g27650/T22C5_2 [Arabidopsis thaliana]
Length = 296
Score = 257 bits (656), Expect(2) = 5e-68
Identities = 119/161 (73%), Positives = 136/161 (83%)
Frame = +3
Query: 114 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTILMANMYQNPLLNAP 293
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPT+L++NMYQ P + P
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
Query: 294 LGPDGLPIRVDPRAAQEHFEDFYEDVFEELAAHGELENLNVCDNFDDHMVGNVYAKFRDE 473
G D +DPR QEHFEDF+ED+FEEL GE+E+LN+CDN DHM+GNVY +F++E
Sbjct: 61 -GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEE 119
Query: 474 DAAARALTALQGRYYDGRPIIVEFSPVTDFREATCRPYEDN 596
D AA AL ALQGR+Y GRPII +FSPVTDFREATCR YE+N
Sbjct: 120 DQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN 160
Score = 23.1 bits (48), Expect(2) = 5e-68
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 599 CNRGGYC 619
CNRGGYC
Sbjct: 162 CNRGGYC 168
>gb|AAL06331.1|AF409139_1 U2 auxiliary factor small subunit [Arabidopsis thaliana]
Length = 296
Score = 257 bits (656), Expect = 1e-67
Identities = 119/161 (73%), Positives = 136/161 (83%)
Frame = +3
Query: 114 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTILMANMYQNPLLNAP 293
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPT+L++NMYQ P + P
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
Query: 294 LGPDGLPIRVDPRAAQEHFEDFYEDVFEELAAHGELENLNVCDNFDDHMVGNVYAKFRDE 473
G D +DPR QEHFEDF+ED+FEEL GE+E+LN+CDN DHM+GNVY +F++E
Sbjct: 61 -GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEE 119
Query: 474 DAAARALTALQGRYYDGRPIIVEFSPVTDFREATCRPYEDN 596
D AA AL ALQGR+Y GRPII +FSPVTDFREATCR YE+N
Sbjct: 120 DQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN 160
>ref|NP_199096.1| splicing factor U2AF small subunit, putative [Arabidopsis thaliana]
gi|22531195|gb|AAM97101.1| U2 snRNP auxiliary factor
small subunit [Arabidopsis thaliana]
gi|23198022|gb|AAN15538.1| U2 snRNP auxiliary factor
small subunit [Arabidopsis thaliana]
Length = 283
Score = 255 bits (652), Expect(2) = 2e-67
Identities = 120/162 (74%), Positives = 136/162 (83%), Gaps = 1/162 (0%)
Frame = +3
Query: 114 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTILMANMYQNPLLNAP 293
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPT+L++NMYQ P + P
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
Query: 294 -LGPDGLPIRVDPRAAQEHFEDFYEDVFEELAAHGELENLNVCDNFDDHMVGNVYAKFRD 470
+ P G P+ DP Q+HFEDFYED+FEEL GE+E+LNVCDN DHM+GNVY F++
Sbjct: 61 GVDPQGQPL--DPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKE 118
Query: 471 EDAAARALTALQGRYYDGRPIIVEFSPVTDFREATCRPYEDN 596
ED AA AL ALQGR+Y GRPII +FSPVTDFREATCR YE+N
Sbjct: 119 EDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN 160
Score = 23.1 bits (48), Expect(2) = 2e-67
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 599 CNRGGYC 619
CNRGGYC
Sbjct: 162 CNRGGYC 168
>emb|CAA77132.1| U2 snRNP auxiliary factor, small subunit [Oryza sativa]
Length = 301
Score = 253 bits (646), Expect(2) = 8e-67
Identities = 117/161 (72%), Positives = 134/161 (82%)
Frame = +3
Query: 114 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTILMANMYQNPLLNAP 293
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPT+SPTI++ANMYQ P + P
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60
Query: 294 LGPDGLPIRVDPRAAQEHFEDFYEDVFEELAAHGELENLNVCDNFDDHMVGNVYAKFRDE 473
G D +DP QEHFEDFYED++EEL+ GE+E LNVCDN DHM+GNVY +FR+E
Sbjct: 61 -GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREE 119
Query: 474 DAAARALTALQGRYYDGRPIIVEFSPVTDFREATCRPYEDN 596
+ A A ALQGR+Y GRPIIVE+SPVTDFREATCR +E+N
Sbjct: 120 EQAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEEN 160
Score = 23.1 bits (48), Expect(2) = 8e-67
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 599 CNRGGYC 619
CNRGGYC
Sbjct: 162 CNRGGYC 168
