KCC001696A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001696A_C01 KCC001696A_c01
agcacctgtgtaggctgtagggaattgcgctagacgcttgccgggccgacccactgtgcg
cttgcacgcgactgagtttcGGAGGCCAAATTGTGACACCGACACTGTTTAATTGTATAC
ACGATGCTAAAGTCTGCTGCGGGAACGCAGCTGCAGCGGCAGCGAGTGACTAGCTCGACC
CGGCCAGTGCTTCGCCTGCGTGCAGCACGCCCGGTCAGGGGCCTAGGCCGCTTGACGCCC
GTCGCCAGCACAGCAATTGCACTACCATCCCAAAGCAGCAATGGGACAGCTCAGGCTCAG
CCTCTGCAGAACCTGGCGGCGCGCATTGTGTCCAGCGGACGCGAGCTCATGGCGACCTGC
GTCGCTGTGAGCCTGGCAACTGCAGTTTTCCAAGTAGCAGCTAAATATGTTAACAAGGCG
CGCGATGCCGTGGCCTCGGCGTTGCCATCGCCCAGTAACATCGACGGTGTTCAGCAGGAC
TGGCGGCAGCAGGTGAAGGAGCTGAAGAAGCACACGCGGGTGCTGGGGTTTGTGCTGCCG
CTGGCGAAGGCGTTCGCGGCGGAGTCGCTTACGTCGGTGTACGCGCGCACGTTTGAGCGC
GCGGCCTTTGGCTTCGCCAAGATGTACCTGTTCTGTCTGTTCATGCGCGTGCTGCTGTCG
TGGTTCCCCTCCATCGACTGGAACTCGCAGCCCTGGGCCTTCCTGCGCCTGATCACGGAG
CCGTACCTGCAGATCTACCGCGGCATCCTGCCGCCGCTCTTCGGCCAGCTGGACTTCACG
CCACTGTTCGGTTCCTCATCCTGCAGAGTGGTGAGCTCTGTCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001696A_C01 KCC001696A_c01
         (824 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_926486.1| hypothetical protein [Gloeobacter violaceus] gi...    83  5e-15
ref|NP_681324.1| ORF_ID:tsr0534~hypothetical protein [Thermosyne...    72  1e-11
ref|NP_486101.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2...    72  1e-11
ref|NP_050675.1| hypothetical chloroplast RF19 [Guillardia theta...    72  1e-11
ref|NP_053963.1| ORF19 [Porphyra purpurea] gi|1723323|sp|P51353|...    68  2e-10

>ref|NP_926486.1| hypothetical protein [Gloeobacter violaceus]
           gi|35214112|dbj|BAC91481.1| ycf19 [Gloeobacter
           violaceus]
          Length = 95

 Score = 83.2 bits (204), Expect = 5e-15
 Identities = 37/80 (46%), Positives = 55/80 (68%)
 Frame = +1

Query: 583 ARTFERAAFGFAKMYLFCLFMRVLLSWFPSIDWNSQPWAFLRLITEPYLQIYRGILPPLF 762
           A+T   A   F ++Y+  LF+RVLLSWFP+IDW+S PWA L  +T+PYL ++R I+PPL 
Sbjct: 7   AQTLAPALSNFIQIYVVLLFVRVLLSWFPNIDWSSNPWAILSQLTDPYLNLFRSIIPPL- 65

Query: 763 GQLDFTPLFGSSSCRVVSSV 822
           G +D +P+    + +VV  +
Sbjct: 66  GGIDLSPILAFLALQVVGGL 85

>ref|NP_681324.1| ORF_ID:tsr0534~hypothetical protein [Thermosynechococcus elongatus
           BP-1] gi|22294255|dbj|BAC08086.1|
           ORF_ID:tsr0534~hypothetical protein [Thermosynechococcus
           elongatus BP-1]
          Length = 96

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 30/58 (51%), Positives = 46/58 (78%)
 Frame = +1

Query: 613 FAKMYLFCLFMRVLLSWFPSIDWNSQPWAFLRLITEPYLQIYRGILPPLFGQLDFTPL 786
           F ++YL  L +RVLLSWFP+I+W + P++ L  +T+PYL I+RG++PP+ G LDF+P+
Sbjct: 17  FLQIYLIILLIRVLLSWFPNINWYNPPFSILSQLTDPYLNIFRGLIPPI-GGLDFSPI 73

>ref|NP_486101.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25305475|pir||AG2063
           hypothetical protein asl2061 [imported] - Nostoc sp.
           (strain PCC 7120) gi|17131152|dbj|BAB73760.1|
           ORF_ID:asl2061~hypothetical protein [Nostoc sp. PCC
           7120]
          Length = 92

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 31/58 (53%), Positives = 44/58 (75%)
 Frame = +1

Query: 613 FAKMYLFCLFMRVLLSWFPSIDWNSQPWAFLRLITEPYLQIYRGILPPLFGQLDFTPL 786
           F  +Y + L +RVLL+WFP IDW +QP+A L  IT+PYL ++R I+PPL G +DF+P+
Sbjct: 11  FVTIYSYLLIIRVLLTWFPQIDWYNQPFAALSQITDPYLNLFRSIIPPL-GGMDFSPI 67

>ref|NP_050675.1| hypothetical chloroplast RF19 [Guillardia theta]
           gi|6136608|sp|O78424|YC19_GUITH HYPOTHETICAL 10.4 KD
           PROTEIN YCF19 gi|3602948|gb|AAC35609.1| hypothetical
           chloroplast RF19 [Guillardia theta]
          Length = 91

 Score = 71.6 bits (174), Expect = 1e-11
 Identities = 30/61 (49%), Positives = 46/61 (75%)
 Frame = +1

Query: 610 GFAKMYLFCLFMRVLLSWFPSIDWNSQPWAFLRLITEPYLQIYRGILPPLFGQLDFTPLF 789
           GF ++YL  L +RV L+WFP+++W  QP+  L  IT+PYL+++RGI+PPL G +D +P+ 
Sbjct: 14  GFLQIYLILLLIRVSLTWFPNVNWYGQPFYSLSRITDPYLKMFRGIVPPLIG-IDISPIL 72

Query: 790 G 792
           G
Sbjct: 73  G 73

>ref|NP_053963.1| ORF19 [Porphyra purpurea] gi|1723323|sp|P51353|YC19_PORPU
           HYPOTHETICAL 10.8 KD PROTEIN YCF19 (ORF95)
           gi|2147512|pir||S73274 hypothetical protein 19 rps16
           3'-region [imported] - red alga (Porphyra purpurea)
           chloroplast gi|1276819|gb|AAC08239.1| hypothetical
           chloroplast ORF 19. [Porphyra purpurea]
          Length = 95

 Score = 67.8 bits (164), Expect = 2e-10
 Identities = 24/60 (40%), Positives = 47/60 (78%)
 Frame = +1

Query: 613 FAKMYLFCLFMRVLLSWFPSIDWNSQPWAFLRLITEPYLQIYRGILPPLFGQLDFTPLFG 792
           F+++YL  + +++ L+WFP+++W ++P+  L  IT+PYL+++RG +PP+FG +D +P+ G
Sbjct: 18  FSEIYLILILLKLSLAWFPTVNWYNEPFCSLNRITDPYLKLFRGSIPPMFG-MDMSPMLG 76



EST assemble image


clone accession position
1 HCL058f11_r AV642820 1 468
2 CM082b02_r AV392083 276 825




Chlamydomonas reinhardtii
Kazusa DNA Research Institute