Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001689A_C01 KCC001689A_c01
(1202 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T10660 photosystem II protein W homolog T5F17.110 - Arabido... 103 5e-28
ref|NP_567814.1| photosystem II protein W - like [Arabidopsis th... 103 5e-28
dbj|BAB89717.1| photosystem II protein W-like protein [Oryza sat... 103 2e-26
ref|ZP_00108100.1| hypothetical protein [Nostoc punctiforme] 97 4e-24
ref|NP_484844.1| photosystem II protein W [Nostoc sp. PCC 7120] ... 94 2e-23
>pir||T10660 photosystem II protein W homolog T5F17.110 - Arabidopsis thaliana
gi|7269721|emb|CAB81454.1| photosystem II protein W-like
[Arabidopsis thaliana]
Length = 224
Score = 103 bits (258), Expect(2) = 5e-28
Identities = 46/78 (58%), Positives = 61/78 (77%)
Frame = +3
Query: 318 SLTNPSIFQASGEMGDITGLFMVDDEGTLSTTDVKAKFINGKPQAIEAKFNMRSQFEWDR 497
S PS+F +SGE+G+ITGL+M+D+EG + +TDV A+F+NGKP+ I AK MRS EWDR
Sbjct: 145 SFDQPSVFDSSGEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDR 204
Query: 498 FMRFMDRYAAENDLGFEK 551
FMRFM+RY+ +N L F K
Sbjct: 205 FMRFMERYSDQNGLQFVK 222
Score = 44.3 bits (103), Expect(2) = 5e-28
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = +1
Query: 163 ARPMQAVAPRPVRNVACDAA---SLQFIKGVAEPTVPEVRLTRSRTGANG 303
A+P A RP++ V+ +LQFI+G E T+P+V+LTRSR G+NG
Sbjct: 91 AQPSSRTALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNG 140
>ref|NP_567814.1| photosystem II protein W - like [Arabidopsis thaliana]
gi|18087645|gb|AAL58951.1|AF462867_1 AT4g28660/T5F17_110
[Arabidopsis thaliana] gi|21360421|gb|AAM47326.1|
AT4g28660/T5F17_110 [Arabidopsis thaliana]
gi|21592461|gb|AAM64412.1| photosystem II protein W-like
[Arabidopsis thaliana]
Length = 183
Score = 103 bits (258), Expect(2) = 5e-28
Identities = 46/78 (58%), Positives = 61/78 (77%)
Frame = +3
Query: 318 SLTNPSIFQASGEMGDITGLFMVDDEGTLSTTDVKAKFINGKPQAIEAKFNMRSQFEWDR 497
S PS+F +SGE+G+ITGL+M+D+EG + +TDV A+F+NGKP+ I AK MRS EWDR
Sbjct: 104 SFDQPSVFDSSGEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDR 163
Query: 498 FMRFMDRYAAENDLGFEK 551
FMRFM+RY+ +N L F K
Sbjct: 164 FMRFMERYSDQNGLQFVK 181
Score = 44.3 bits (103), Expect(2) = 5e-28
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = +1
Query: 163 ARPMQAVAPRPVRNVACDAA---SLQFIKGVAEPTVPEVRLTRSRTGANG 303
A+P A RP++ V+ +LQFI+G E T+P+V+LTRSR G+NG
Sbjct: 50 AQPSSRTALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNG 99
>dbj|BAB89717.1| photosystem II protein W-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 120
Score = 103 bits (256), Expect(2) = 2e-26
Identities = 46/74 (62%), Positives = 57/74 (76%)
Frame = +3
Query: 330 PSIFQASGEMGDITGLFMVDDEGTLSTTDVKAKFINGKPQAIEAKFNMRSQFEWDRFMRF 509
PS+F +S E+GDITG +M+DDEG L + DV AKF+NGKP IEAK+ MR+ EWDRFMRF
Sbjct: 46 PSVFDSSAELGDITGFYMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRF 105
Query: 510 MDRYAAENDLGFEK 551
M+RY+ N L F K
Sbjct: 106 MERYSQANGLQFVK 119
Score = 39.3 bits (90), Expect(2) = 2e-26
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +1
Query: 223 SLQFIKGVAEPTVPEVRLTRSRTGANG 303
++QFI+G E T+P+VRLT+SR G NG
Sbjct: 11 AIQFIQGTDEQTIPDVRLTKSRDGTNG 37
>ref|ZP_00108100.1| hypothetical protein [Nostoc punctiforme]
Length = 113
Score = 96.7 bits (239), Expect(2) = 4e-24
Identities = 45/76 (59%), Positives = 57/76 (74%)
Frame = +3
Query: 324 TNPSIFQASGEMGDITGLFMVDDEGTLSTTDVKAKFINGKPQAIEAKFNMRSQFEWDRFM 503
TNP I G DITG+++ D+EG + T +VKAKF+NGKP+A+EA + M+S EWDRFM
Sbjct: 36 TNPKILD-QGSTEDITGMYLSDEEGEIITREVKAKFVNGKPEALEALYVMKSAQEWDRFM 94
Query: 504 RFMDRYAAENDLGFEK 551
RFM+RYA ENDLG K
Sbjct: 95 RFMERYAEENDLGLSK 110
Score = 38.5 bits (88), Expect(2) = 4e-24
Identities = 17/28 (60%), Positives = 22/28 (77%)
Frame = +1
Query: 220 ASLQFIKGVAEPTVPEVRLTRSRTGANG 303
A +QF +G+ E +PEVRLTRSRTG +G
Sbjct: 2 AKIQFSRGLDEVVIPEVRLTRSRTGDSG 29
>ref|NP_484844.1| photosystem II protein W [Nostoc sp. PCC 7120]
gi|25330417|pir||AG1906 photosystem II protein W
[imported] - Nostoc sp. (strain PCC 7120)
gi|17130146|dbj|BAB72758.1| photosystem II protein W
[Nostoc sp. PCC 7120]
Length = 111
Score = 93.6 bits (231), Expect(3) = 2e-23
Identities = 42/76 (55%), Positives = 57/76 (74%)
Frame = +3
Query: 324 TNPSIFQASGEMGDITGLFMVDDEGTLSTTDVKAKFINGKPQAIEAKFNMRSQFEWDRFM 503
TNP I G DITG++++D+EG + T +VK KFING+P+ +EA + M+S EW+RF+
Sbjct: 36 TNPKILD-QGTTEDITGMYLIDEEGEIITREVKGKFINGRPEGLEAVYVMKSAQEWERFI 94
Query: 504 RFMDRYAAENDLGFEK 551
RFM+RYA ENDLGF K
Sbjct: 95 RFMERYAQENDLGFSK 110
Score = 38.5 bits (88), Expect(3) = 2e-23
Identities = 17/28 (60%), Positives = 21/28 (74%)
Frame = +1
Query: 220 ASLQFIKGVAEPTVPEVRLTRSRTGANG 303
A +QF +G+ E +PEVRLTRSRTG G
Sbjct: 2 AKIQFSRGLDEEVIPEVRLTRSRTGDTG 29
Score = 20.8 bits (42), Expect(3) = 2e-23
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 299 TGTAIFVFDEPQHL 340
TGTA F+F P+ L
Sbjct: 28 TGTATFIFTNPKIL 41
