KCC001688A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001688A_C01 KCC001688A_c01
ccacatacttcacaTACCCCGGCACTAATACAACAATTCTTCATACACAGCGACCATAAT
TACCTGCCATCGCGCTGGCGTCCGGTACATAATCGCGACCATCAACATATCCAATCCGAT
ACCTTCGCTCTCTAGCCGTGCGCCGCGTGCGCAGTCGGCAAAGCCCTTTGATATGGGCGC
ATCAGGCTCCAAGCCGGAGGGTGCCGGCCCTGGCCCGGCGCTTCCGACACCGTCACCCGC
TCCCCCCGGTGTACCCATTGGCCCCGACGGCAAGCCCAAGAAGATTTGCTGCAGCTGCCC
TGACACCAAGAAGCTCCGGGACACCTGCATCGCTGAGCGCGGCGAGGAGCACGCCTACTG
CCAAGCGCTGATCGAGGCGCACAAGGCGTGCCTGCGGGTGGAGGGGTTCAAGGTGTGAGG
GGCTGCGGCGGCTCACGGCGCGGCGCCTCACCGCGTCAGCGGCAGTGGCTGGCGGCAGCG
GCTGGCGGCCGCGGCACCGCGGCAGCGGCTGGCGGCCAGCGGCGGCGGGCGGCGTCTCAC
TAGCGTAGCCTCTCAATGCCAGATATCGCGCCGTGGGGCAGAGAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001688A_C01 KCC001688A_c01
         (585 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAF82382.1|AF280543_1 putative copper chaperone Cox17 [Chlamy...   178  6e-44
ref|NP_445992.1| cytochrome c oxidase, subunit XVII assembly pro...    79  6e-14
ref|NP_005685.1| COX17 homolog, cytochrome c oxidase assembly pr...    77  2e-13
sp|P81045|COXS_PIG CYTOCHROME C OXIDASE COPPER CHAPERONE (DOPUIN)      76  3e-13
ref|NP_566508.1| expressed protein [Arabidopsis thaliana] gi|929...    75  7e-13

>gb|AAF82382.1|AF280543_1 putative copper chaperone Cox17 [Chlamydomonas reinhardtii]
          Length = 81

 Score =  178 bits (451), Expect = 6e-44
 Identities = 81/81 (100%), Positives = 81/81 (100%)
 Frame = +2

Query: 173 MGASGSKPEGAGPGPALPTPSPAPPGVPIGPDGKPKKICCSCPDTKKLRDTCIAERGEEH 352
           MGASGSKPEGAGPGPALPTPSPAPPGVPIGPDGKPKKICCSCPDTKKLRDTCIAERGEEH
Sbjct: 1   MGASGSKPEGAGPGPALPTPSPAPPGVPIGPDGKPKKICCSCPDTKKLRDTCIAERGEEH 60

Query: 353 AYCQALIEAHKACLRVEGFKV 415
           AYCQALIEAHKACLRVEGFKV
Sbjct: 61  AYCQALIEAHKACLRVEGFKV 81

>ref|NP_445992.1| cytochrome c oxidase, subunit XVII assembly protein homolog [Rattus
           norvegicus] gi|3023549|sp|P56394|COXS_MOUSE CYTOCHROME C
           OXIDASE COPPER CHAPERONE gi|5851903|dbj|BAA84193.1|
           cytochrome C oxidase assembly protein COX17 [Rattus
           norvegicus] gi|12862574|dbj|BAB32486.1| Cox17p [Mus
           musculus] gi|28913509|gb|AAH48668.1| Unknown (protein
           for MGC:58837) [Mus musculus]
          Length = 63

 Score = 78.6 bits (192), Expect = 6e-14
 Identities = 38/67 (56%), Positives = 44/67 (64%)
 Frame = +2

Query: 215 PALPTPSPAPPGVPIGPDGKPKKICCSCPDTKKLRDTCIAERGEEHAYCQALIEAHKACL 394
           P L   SPAPP      + KP K CC+CP+TKK RD CI E+GEEH  C  LIEAHK C+
Sbjct: 2   PGLAAASPAPPEAQ---EKKPLKPCCACPETKKARDACIIEKGEEH--CGHLIEAHKECM 56

Query: 395 RVEGFKV 415
           R  GFK+
Sbjct: 57  RALGFKI 63

>ref|NP_005685.1| COX17 homolog, cytochrome c oxidase assembly protein; human homolog
           of yeast mitochondrial copper recruitment gene; COX17
           (yeast) homolog, cytochrome c oxidase assembly protein
           [Homo sapiens] gi|2493873|sp|Q14061|COXS_HUMAN
           Cytochrome c oxidase copper chaperone
           gi|7512358|pir||T09533 COX17 protein - human
           gi|1280206|gb|AAA98114.1| COX17 [Homo sapiens]
           gi|9049966|gb|AAF82569.1|AF269245_1 COX17 [Homo sapiens]
           gi|15012067|gb|AAH10933.1| COX17 homolog, cytochrome c
           oxidase assembly protein [Homo sapiens]
          Length = 63

 Score = 76.6 bits (187), Expect = 2e-13
 Identities = 37/67 (55%), Positives = 44/67 (65%)
 Frame = +2

Query: 215 PALPTPSPAPPGVPIGPDGKPKKICCSCPDTKKLRDTCIAERGEEHAYCQALIEAHKACL 394
           P L   +PAPP      + KP K CC+CP+TKK RD CI E+GEEH  C  LIEAHK C+
Sbjct: 2   PGLVDSNPAPPE---SQEKKPLKPCCACPETKKARDACIIEKGEEH--CGHLIEAHKECM 56

Query: 395 RVEGFKV 415
           R  GFK+
Sbjct: 57  RALGFKI 63

>sp|P81045|COXS_PIG CYTOCHROME C OXIDASE COPPER CHAPERONE (DOPUIN)
          Length = 62

 Score = 76.3 bits (186), Expect = 3e-13
 Identities = 37/67 (55%), Positives = 43/67 (63%)
 Frame = +2

Query: 215 PALPTPSPAPPGVPIGPDGKPKKICCSCPDTKKLRDTCIAERGEEHAYCQALIEAHKACL 394
           P L    PAPP      + KP K CC+CP+TKK RD CI E+GEEH  C  LIEAHK C+
Sbjct: 1   PGLAAAIPAPPE---SQEKKPLKPCCACPETKKARDACIIEKGEEH--CGHLIEAHKECM 55

Query: 395 RVEGFKV 415
           R  GFK+
Sbjct: 56  RALGFKI 62

>ref|NP_566508.1| expressed protein [Arabidopsis thaliana] gi|9294267|dbj|BAB02169.1|
           contains similarity to cytochrome C oxidase assembly
           protein~gene_id:K7L4.20 [Arabidopsis thaliana]
           gi|14794882|gb|AAK73496.1|AF349684_1 copper chaperone
           COX17-1 [Arabidopsis thaliana]
           gi|22297185|gb|AAM95390.1|AF505654_1 Cu-chaperone
           [Arabidopsis thaliana]
          Length = 74

 Score = 75.1 bits (183), Expect = 7e-13
 Identities = 37/66 (56%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
 Frame = +2

Query: 221 LPTPSPAPPGVPIGPDGKPKK-ICCSCPDTKKLRDTCIAERGEEHAYCQALIEAHKACLR 397
           +P P+  P       + KPKK ICC+CPDTKKLRD CI E GE  + C   IEAHK CLR
Sbjct: 11  IPPPTSEPSKAAASAETKPKKRICCACPDTKKLRDECIVEHGE--SACTKWIEAHKICLR 68

Query: 398 VEGFKV 415
            EGF V
Sbjct: 69  AEGFNV 74



EST assemble image


clone accession position
1 CM080h02_r AV392030 1 585
2 LC025b06_r AV620661 15 415
3 MX040e06_r BP087660 17 166
4 HC026d05_r AV633875 42 425




Chlamydomonas reinhardtii
Kazusa DNA Research Institute