KCC001643A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001643A_C01 KCC001643A_c01
gttcgcgtgtttagTGCGAGTCGAAAACTCGGTTGGGCTGTTGCTCTTCGCCGCAAGCGA
GTCCGTCCTTTCCACCCGCTCTAATACCAATACATACAAACATCAATAGCGGTACACGAC
TTGATTCTCATATTAGTTACGCGAGCGGGCGTTCGAAACAATGGCCCGGCGACTCTTGCT
TGCGCTAGCGCTGGCCGCGGTGCTAGGCCTGGCGCACGCCCGGTCGGTCCCTGTCTCTAC
AAGTGACCCGGACGCTCGGAAAAAGATTGTGGTGCTTGATCCCGATGCACGGATTTACCT
TTGGAAGGGCTTCCTAACGCCGGAGGAGTGCGACTACATTCGCATGAAGGCGGAGAAGCG
CCTGGAACGTAGCGGCGTGGTGGACACCGGTAGCGGCGGCTCGGTGGTTTCGGACCTCCG
CACCATCGACGGGATGTTCTTTGAGCGCGGCGAGGACGCTATCATCGAGGCCGTGGAGCA
GCGGCTGGCTGACTGGACCATGACGCCCATCTGGGGTGGCGAGTCGCTGCCAGTGCTGCG
ATACCGCAAGGACAGAAGTCGACTCGnCTGGGACTCTCTTCCCCAGACGGGTTCCACGGG
GACGTGGCCTGGTGTGTCGCCCACCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001643A_C01 KCC001643A_c01
         (626 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO72377.1| putative oxidoreductase [Oryza sativa (japonica c...    87  2e-16
ref|NP_566279.1| oxidoreductase, 2OG-Fe(II) oxygenase family [Ar...    86  6e-16
gb|AAF08583.1|AC011623_16 unknown protein [Arabidopsis thaliana]       86  6e-16
gb|AAM67123.1| prolyl 4-hydroxylase alpha subunit-like protein [...    86  6e-16
dbj|BAC83179.1| prolyl 4-hydroxylase alpha-1 subunit precursor-l...    84  2e-15

>gb|AAO72377.1| putative oxidoreductase [Oryza sativa (japonica cultivar-group)]
          Length = 310

 Score = 87.4 bits (215), Expect = 2e-16
 Identities = 45/137 (32%), Positives = 77/137 (55%), Gaps = 11/137 (8%)
 Frame = +2

Query: 167 RRLLLALALAAVLGLAHARSVP-----------VSTSDPDARKKIVVLDPDARIYLWKGF 313
           RRLL+  AL +V  +      P           V  + P     + ++    RI+ +KGF
Sbjct: 4   RRLLVLFALLSVTAVVPVFLWPDKKGGASDVAVVVAAPPFNASSVTIISWKPRIFFYKGF 63

Query: 314 LTPEECDYIRMKAEKRLERSGVVDTGSGGSVVSDLRTIDGMFFERGEDAIIEAVEQRLAD 493
           L+ +ECD++    +++L+RS V D  SG SV+S++RT  GMF ++ +D ++  +E+R+A 
Sbjct: 64  LSDDECDHLVKLGKEKLKRSMVADNESGKSVMSEVRTSSGMFLDKQQDPVVSGIEERIAA 123

Query: 494 WTMTPIWGGESLPVLRY 544
           WT+ P    E++ +LRY
Sbjct: 124 WTLLPQENAENIQILRY 140

>ref|NP_566279.1| oxidoreductase, 2OG-Fe(II) oxygenase family [Arabidopsis thaliana]
          Length = 299

 Score = 85.5 bits (210), Expect = 6e-16
 Identities = 47/126 (37%), Positives = 72/126 (56%), Gaps = 1/126 (0%)
 Frame = +2

Query: 170 RLLLALALAAVLGLAHARSVPVSTSDPDAR-KKIVVLDPDARIYLWKGFLTPEECDYIRM 346
           RL L L +A +L L  + +  +S+        K+  +    R ++++GFLT  ECD++  
Sbjct: 5   RLGLLLFVAILLVLLQSSTCLISSPSSIINPSKVKQVSSKPRAFVYEGFLTDLECDHLIS 64

Query: 347 KAEKRLERSGVVDTGSGGSVVSDLRTIDGMFFERGEDAIIEAVEQRLADWTMTPIWGGES 526
            A++ L+RS V D  +G S VSD+RT  G F  +G+D I+  +E +L+ WT  P   GE 
Sbjct: 65  LAKENLQRSAVADNDNGESQVSDVRTSSGTFISKGKDPIVSGIEDKLSTWTFLPKENGED 124

Query: 527 LPVLRY 544
           L VLRY
Sbjct: 125 LQVLRY 130

>gb|AAF08583.1|AC011623_16 unknown protein [Arabidopsis thaliana]
          Length = 278

 Score = 85.5 bits (210), Expect = 6e-16
 Identities = 47/126 (37%), Positives = 72/126 (56%), Gaps = 1/126 (0%)
 Frame = +2

Query: 170 RLLLALALAAVLGLAHARSVPVSTSDPDAR-KKIVVLDPDARIYLWKGFLTPEECDYIRM 346
           RL L L +A +L L  + +  +S+        K+  +    R ++++GFLT  ECD++  
Sbjct: 5   RLGLLLFVAILLVLLQSSTCLISSPSSIINPSKVKQVSSKPRAFVYEGFLTDLECDHLIS 64

Query: 347 KAEKRLERSGVVDTGSGGSVVSDLRTIDGMFFERGEDAIIEAVEQRLADWTMTPIWGGES 526
            A++ L+RS V D  +G S VSD+RT  G F  +G+D I+  +E +L+ WT  P   GE 
Sbjct: 65  LAKENLQRSAVADNDNGESQVSDVRTSSGTFISKGKDPIVSGIEDKLSTWTFLPKENGED 124

Query: 527 LPVLRY 544
           L VLRY
Sbjct: 125 LQVLRY 130

>gb|AAM67123.1| prolyl 4-hydroxylase alpha subunit-like protein [Arabidopsis
           thaliana]
          Length = 297

 Score = 85.5 bits (210), Expect = 6e-16
 Identities = 47/126 (37%), Positives = 72/126 (56%), Gaps = 1/126 (0%)
 Frame = +2

Query: 170 RLLLALALAAVLGLAHARSVPVSTSDPDAR-KKIVVLDPDARIYLWKGFLTPEECDYIRM 346
           RL L L +A +L L  + +  +S+        K+  +    R ++++GFLT  ECD++  
Sbjct: 3   RLGLLLFVAILLVLLQSSTCLISSPSSIINPSKVKQVSSKPRAFVYEGFLTDLECDHLIS 62

Query: 347 KAEKRLERSGVVDTGSGGSVVSDLRTIDGMFFERGEDAIIEAVEQRLADWTMTPIWGGES 526
            A++ L+RS V D  +G S VSD+RT  G F  +G+D I+  +E +L+ WT  P   GE 
Sbjct: 63  LAKENLQRSAVADNDNGESQVSDVRTSSGTFISKGKDPIVSGIEDKLSTWTFLPKENGED 122

Query: 527 LPVLRY 544
           L VLRY
Sbjct: 123 LQVLRY 128

>dbj|BAC83179.1| prolyl 4-hydroxylase alpha-1 subunit precursor-like protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 313

 Score = 84.0 bits (206), Expect = 2e-15
 Identities = 42/127 (33%), Positives = 76/127 (59%), Gaps = 3/127 (2%)
 Frame = +2

Query: 173 LLLALALAAVLGLAHARSV---PVSTSDPDARKKIVVLDPDARIYLWKGFLTPEECDYIR 343
           LL A A+  +L L  A       V+ + P    ++  +    R++++KGFL+ +ECD++ 
Sbjct: 17  LLTATAVVPLLLLGEAGDDGVGAVAAAPPFNASRVRAVSWRPRVFVYKGFLSDDECDHLV 76

Query: 344 MKAEKRLERSGVVDTGSGGSVVSDLRTIDGMFFERGEDAIIEAVEQRLADWTMTPIWGGE 523
              +++++RS V D  SG SV+S++RT  GMF ++ +D ++  +E+R+A WT  P    E
Sbjct: 77  KLGKRKMQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEKRIAAWTFLPEENAE 136

Query: 524 SLPVLRY 544
           ++ +LRY
Sbjct: 137 NIQILRY 143



EST assemble image


clone accession position
1 MX237g06_r BP091371 1 407
2 CM074b05_r AV391571 15 628
3 LC032h09_r AV621222 37 457




Chlamydomonas reinhardtii
Kazusa DNA Research Institute