KCC001625A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001625A_C01 KCC001625A_c01
gTAATATATAAAATGCATGCACTTGCGGCTGCACCCGTCGGTGCCCCGCCCTCGGCGACC
ACTCGTCCGAACACCAGCTCCGTGCGAGTGCCACTCCTCGCACACCGGTCGTCCCAAATT
ACCTGCGCATCGGCGCAGCCCAGCATGAATGCCGTGGGGCGCCGCGTGGCGCTGCTGGGC
TCTGGACTGCTTGGTGCGAGCGCGATGCAGCTGGCGGGGCGGAGGGGCACGGCTGCGTCG
GCAGCCAGCGCCAAAACTGACATTGAGAAGGTGCTGGATGACCCGCGATGGCCGGAACAG
TTCCCTTTCCGCCCGGAGAACTTCGCGCGCTACGACGAGACGCCAGACACCTACTTCTAC
TCGCAGCCCCGCTTTGTGACCCACATCGATGATGGCGCCATCAAGGGCGCTCACCAAGTT
CTACGGGCGAAGTGTTCCCACCCTCGGGGACCCAGACCGCTGCCGTCCTGGACATCTGCA
GCTCCTGGGTCAGCCACTACCCGGAGGGCTACAAGGCCGGCCGGCGTGGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001625A_C01 KCC001625A_c01
         (531 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB89117.1| B1142C05.17 [Oryza sativa (japonica cultivar-gro...    73  1e-21
ref|NP_194688.1| expressed protein [Arabidopsis thaliana] gi|748...    72  2e-19
gb|AAM61165.1| unknown [Arabidopsis thaliana]                          72  9e-19
gb|AAK53012.1|AF375428_1 AT4g29590/T16L4_100 [Arabidopsis thalia...    69  2e-18
ref|ZP_00111690.1| COG0500: SAM-dependent methyltransferases [No...    38  1e-04

>dbj|BAB89117.1| B1142C05.17 [Oryza sativa (japonica cultivar-group)]
          Length = 307

 Score = 73.2 bits (178), Expect(2) = 1e-21
 Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
 Frame = +1

Query: 46  PPSATTRPNTSSVRVPLLAHRSSQITCASAQPSMNAVGRRVAL-LGSGLLGASAMQLAGR 222
           P   T R   S  R      R + +   +A+P      RRV L LG+  +   A   +G 
Sbjct: 17  PRLRTPRARASGPRA-----RGAPVAPQAARP------RRVFLGLGAAFVDQLARMASGG 65

Query: 223 RGTAASAASAK-----TDIEKVLDDPRWPEQFPFRPENFARYDETPDTYFYSQPRFVTHI 387
             + +  ASA+     + +E++L +  WP++FPF+ E+F+R+DE+ D  FYS PR+VTHI
Sbjct: 66  APSRSFVASARPRQGVSPVEQILKNVEWPDEFPFKAEDFSRFDESSDALFYSAPRYVTHI 125

Query: 388 DDGAIK 405
           DD AI+
Sbjct: 126 DDQAIE 131

 Score = 51.6 bits (122), Expect(2) = 1e-21
 Identities = 21/29 (72%), Positives = 23/29 (78%)
 Frame = +3

Query: 429 EVFPPSGTQTAAVLDICSSWVSHYPEGYK 515
           EV PPS T   A+LD+CSSWVSHYP GYK
Sbjct: 139 EVLPPSNTPGVAILDMCSSWVSHYPPGYK 167

>ref|NP_194688.1| expressed protein [Arabidopsis thaliana] gi|7487096|pir||T09922
           hypothetical protein T16L4.100 - Arabidopsis thaliana
           gi|5123553|emb|CAB45319.1| putative protein [Arabidopsis
           thaliana] gi|7269858|emb|CAB79717.1| putative protein
           [Arabidopsis thaliana]
          Length = 317

 Score = 72.0 bits (175), Expect(2) = 2e-19
 Identities = 42/93 (45%), Positives = 57/93 (61%), Gaps = 7/93 (7%)
 Frame = +1

Query: 145 MNAVGRRVALLGSGLLGASAMQ---LAGRRGTAASAASAK----TDIEKVLDDPRWPEQF 303
           + A  RR  +LG G  GAS      ++G+ G  +  ASA+    + +E+ L+   WPE F
Sbjct: 48  IRASSRRRLVLG-GFGGASLWMNNNMSGKFGGKSFIASARQTNPSPVEQALNKVDWPETF 106

Query: 304 PFRPENFARYDETPDTYFYSQPRFVTHIDDGAI 402
           PF+ E+F RYDE+ D+ FY  PRFVTHIDD AI
Sbjct: 107 PFKEEDFQRYDESSDSTFYEAPRFVTHIDDPAI 139

 Score = 45.1 bits (105), Expect(2) = 2e-19
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +3

Query: 429 EVFPPSGTQTAAVLDICSSWVSHYPEGYKAGR 524
           +V P S T   ++LD+CSSWVSHYP GY+  R
Sbjct: 148 KVLPQSDTPGVSILDMCSSWVSHYPPGYRQER 179

>gb|AAM61165.1| unknown [Arabidopsis thaliana]
          Length = 317

 Score = 72.0 bits (175), Expect(2) = 9e-19
 Identities = 42/93 (45%), Positives = 57/93 (61%), Gaps = 7/93 (7%)
 Frame = +1

Query: 145 MNAVGRRVALLGSGLLGASAMQ---LAGRRGTAASAASAK----TDIEKVLDDPRWPEQF 303
           + A  RR  +LG G  GAS      ++G+ G  +  ASA+    + +E+ L+   WPE F
Sbjct: 48  IRASSRRRLVLG-GFGGASLWMNNNMSGKFGGKSFIASARQTNPSPVEQALNKVDWPETF 106

Query: 304 PFRPENFARYDETPDTYFYSQPRFVTHIDDGAI 402
           PF+ E+F RYDE+ D+ FY  PRFVTHIDD AI
Sbjct: 107 PFKEEDFQRYDESSDSTFYEAPRFVTHIDDPAI 139

 Score = 42.7 bits (99), Expect(2) = 9e-19
 Identities = 17/32 (53%), Positives = 22/32 (68%)
 Frame = +3

Query: 429 EVFPPSGTQTAAVLDICSSWVSHYPEGYKAGR 524
           +V P S T   ++LD+CSSWV HYP GY+  R
Sbjct: 148 KVLPQSDTPGVSILDMCSSWVIHYPPGYRQER 179

>gb|AAK53012.1|AF375428_1 AT4g29590/T16L4_100 [Arabidopsis thaliana]
           gi|21464553|gb|AAM52231.1| AT4g29590/T16L4_100
           [Arabidopsis thaliana]
          Length = 250

 Score = 68.9 bits (167), Expect(2) = 2e-18
 Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
 Frame = +1

Query: 211 LAGRRGTAASAASAK----TDIEKVLDDPRWPEQFPFRPENFARYDETPDTYFYSQPRFV 378
           ++G+ G  +  ASA+    + +E+ L+   WPE FPF+ E+F RYDE+ D+ FY  PRFV
Sbjct: 5   MSGKFGGKSFIASARQTNPSPVEQALNKVDWPETFPFKEEDFQRYDESSDSTFYEAPRFV 64

Query: 379 THIDDGAI 402
           THIDD AI
Sbjct: 65  THIDDPAI 72

 Score = 45.1 bits (105), Expect(2) = 2e-18
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +3

Query: 429 EVFPPSGTQTAAVLDICSSWVSHYPEGYKAGR 524
           +V P S T   ++LD+CSSWVSHYP GY+  R
Sbjct: 81  KVLPQSDTPGVSILDMCSSWVSHYPPGYRQER 112

>ref|ZP_00111690.1| COG0500: SAM-dependent methyltransferases [Nostoc punctiforme]
          Length = 222

 Score = 38.1 bits (87), Expect(2) = 1e-04
 Identities = 15/32 (46%), Positives = 21/32 (64%)
 Frame = +1

Query: 310 RPENFARYDETPDTYFYSQPRFVTHIDDGAIK 405
           RP    + D+  D  FY+ PRFVTH+D+G I+
Sbjct: 4   RPNQRLKLDDKDDKLFYAYPRFVTHVDEGFIQ 35

 Score = 28.5 bits (62), Expect(2) = 1e-04
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 453 QTAAVLDICSSWVSHYPE 506
           Q   +LD+ SSWVSH PE
Sbjct: 55  QDTRILDMMSSWVSHLPE 72



EST assemble image


clone accession position
1 CM071d05_r AV391358 1 593
2 CM094f05_r AV393282 2 490




Chlamydomonas reinhardtii
Kazusa DNA Research Institute