KCC001623A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001623A_C01 KCC001623A_c01
TGACACAGCCCCGAGGAAGCCTTTCTTTGAGCCAGTCTCAGAAATGCTTCCAGCCCTTGC
GCGCACAGCGCGCCACCATGGCCTTTTCACTGTGAGTCAATGCTCTTGACACGCGTAGTT
CGAGCTCGCTTACAAACTCATGATCGGTCTGCGCAGAAGGTCGGCGTTCGGGGGTTCGCC
AGCCAGGTCTCCGAGATGACTGTGCGTGACGCTCTGAACTCGGCTCTCGATGAGGAGCTG
GCTCGCGACGACAAGGTCTATGTGCTCGGCGAGGAGGTTGGCGAGTATCAGGGCGCTTAC
AAGATCACGAGAGGTCTGCTCCAAAAGTATGGGCCGGACCGCGTGAAGGACACGCCCATC
ACTGAGGCGGGTTTCACGGGTATCGCGGTGGGCTCTGCTTTCGCGGGCCTGCGCCCCGTG
TGCGAGTTCATGACCTGGAACTTCGCAATGCAAGCCATCGACCAAATTATCAACTCGGCG
GCAAAGACGCTGTACATGTCGGCGGGCCAGATTAACTGCCCCATCGTGTTCCGCGGGCCC
AATGGTGCTGCGGCGGGTGTGGCAGCGCAGCACTCCCAGTGCTTCGCCTCGTGGTACAGC
TCTGTACCCGGCCTTAAGGTGCTGGCGCCATACGACTCGGAGGACGCACGTGGCCTGATG
AAGGCCGCCATCCGGGACCCCGACCCGGTGGTGTTTCTGGAGAATGAGATCCTGTACGGC
CAGGCCTTCCCCGTAACGCCGCAGGTGCTGGACAAGGACTTCGTGCTGCCCATTGGCAAG
GCCAAGGTGATGCGGGAAGGCAAGCACGTGACGCTGGTGTCGTTCTCCAAGATGGTGGGC
TACTGCCTCAAGGCAGCGGAGCAGCTGGCCAAGGAGGGCATCGACTGCGAGGTAATCAAC
CTGCGCTCCATCAAGCCGCTGGACCGCGACACGCTTCTGGCCAGTGTGAAGAAGACGCAC
AAGATTATCAGCGTGGAGGAGGGGTGGCCGCAGTGCGGCGTGGGCAGCGAGATTAGCGCC
GTCATGATGGAGCTGGCCTTCGATGAGCTGGACGCGCCGGTGCTGCGCGTCACCGGCGCG
GAGGTGCCCATGCCCTACGCCGCCAACCTGGAGGCCGCGGCGCTTCCCCAGATTGATGAC
ATCATCAAGGCCGTGAAGAGCATTGCATGAGCGGTGTGACACTGGCAGCGGATACGGAGC
GGCGGTGGCGGCGGCAGGTGTACTGCCTGTAGCGAGTCTGGAGCAGCAACTAGGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001623A_C01 KCC001623A_c01
         (1256 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_199898.1| pyruvate dehydrogenase E1 component beta subuni...   494  e-138
gb|AAA52225.1| pyruvate dehydrogenase E1 beta subunit gi|1090498...   491  e-137
gb|AAC72193.1| pyruvate dehydrogenase E1 beta subunit isoform 2 ...   483  e-135
gb|AAC72194.1| pyruvate dehydrogenase E1 beta subunit isoform 3 ...   482  e-135
gb|AAC72192.1| pyruvate dehydrogenase E1 beta subunit isoform 1 ...   481  e-134

>ref|NP_199898.1| pyruvate dehydrogenase E1 component beta subunit, mitochondrial
            precursor (PDHE1-B) (sp Q38799) [Arabidopsis thaliana]
            gi|21431823|sp|Q38799|ODPB_ARATH Pyruvate dehydrogenase
            E1 component beta subunit, mitochondrial precursor
            (PDHE1-B) gi|8953766|dbj|BAA98121.1| pyruvate
            dehydrogenase E1 component beta subunit, mitochondrial
            precursor (PDHE1-B) [Arabidopsis thaliana]
            gi|17979466|gb|AAL50070.1| AT5g50850/K16E14_1
            [Arabidopsis thaliana] gi|23507745|gb|AAN38676.1|
            At5g50850/K16E14_1 [Arabidopsis thaliana]
          Length = 363

 Score =  494 bits (1272), Expect = e-138
 Identities = 241/333 (72%), Positives = 292/333 (87%)
 Frame = +1

Query: 160  VGVRGFASQVSEMTVRDALNSALDEELARDDKVYVLGEEVGEYQGAYKITRGLLQKYGPD 339
            V  R +A+   EMTVRDALNSA+DEE++ D KV+V+GEEVG+YQGAYKIT+GLL+KYGP+
Sbjct: 24   VSARSYAAGAKEMTVRDALNSAIDEEMSADPKVFVMGEEVGQYQGAYKITKGLLEKYGPE 83

Query: 340  RVKDTPITEAGFTGIAVGSAFAGLRPVCEFMTWNFAMQAIDQIINSAAKTLYMSAGQINC 519
            RV DTPITEAGFTGI VG+A+AGL+PV EFMT+NF+MQAID IINSAAK+ YMSAGQIN 
Sbjct: 84   RVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINV 143

Query: 520  PIVFRGPNGAAAGVAAQHSQCFASWYSSVPGLKVLAPYDSEDARGLMKAAIRDPDPVVFL 699
            PIVFRGPNGAAAGV AQHSQC+A+WY+SVPGLKVLAPY +EDARGL+KAAIRDPDPVVFL
Sbjct: 144  PIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLAPYSAEDARGLLKAAIRDPDPVVFL 203

Query: 700  ENEILYGQAFPVTPQVLDKDFVLPIGKAKVMREGKHVTLVSFSKMVGYCLKAAEQLAKEG 879
            ENE+LYG++FP++ + LD  F LPIGKAK+ REGK VT+V+FSKMVG+ LKAAE+LA+EG
Sbjct: 204  ENELLYGESFPISEEALDSSFCLPIGKAKIEREGKDVTIVTFSKMVGFALKAAEKLAEEG 263

Query: 880  IDCEVINLRSIKPLDRDTLLASVKKTHKIISVEEGWPQCGVGSEISAVMMELAFDELDAP 1059
            I  EVINLRSI+PLDR T+ ASV+KT ++++VEEG+PQ GV +EI A ++E +F  LDAP
Sbjct: 264  ISAEVINLRSIRPLDRATINASVRKTSRLVTVEEGFPQHGVCAEICASVVEESFSYLDAP 323

Query: 1060 VLRVTGAEVPMPYAANLEAAALPQIDDIIKAVK 1158
            V R+ GA+VPMPYAANLE  ALPQI+DI++A K
Sbjct: 324  VERIAGADVPMPYAANLERLALPQIEDIVRASK 356

>gb|AAA52225.1| pyruvate dehydrogenase E1 beta subunit gi|1090498|prf||2019230A
            pyruvate dehydrogenase
          Length = 363

 Score =  491 bits (1264), Expect = e-137
 Identities = 239/333 (71%), Positives = 291/333 (86%)
 Frame = +1

Query: 160  VGVRGFASQVSEMTVRDALNSALDEELARDDKVYVLGEEVGEYQGAYKITRGLLQKYGPD 339
            V  R +A+   EMTVRDALNSA+DEE++ D KV+V+GEEVG+YQGAYKIT+GLL+KYGP+
Sbjct: 24   VSARSYAAGAKEMTVRDALNSAIDEEMSADPKVFVMGEEVGQYQGAYKITKGLLEKYGPE 83

Query: 340  RVKDTPITEAGFTGIAVGSAFAGLRPVCEFMTWNFAMQAIDQIINSAAKTLYMSAGQINC 519
            RV DTPITEAGFTGI VG+A+AGL+PV EFMT+NF+MQAID IINSAAK+ YMSAGQIN 
Sbjct: 84   RVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINV 143

Query: 520  PIVFRGPNGAAAGVAAQHSQCFASWYSSVPGLKVLAPYDSEDARGLMKAAIRDPDPVVFL 699
            PIVFRGPNGAAAGV AQHSQC+A+WY+SVPGLKVLAPY +EDARGL+KAAIRDPDPVVFL
Sbjct: 144  PIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLAPYSAEDARGLLKAAIRDPDPVVFL 203

Query: 700  ENEILYGQAFPVTPQVLDKDFVLPIGKAKVMREGKHVTLVSFSKMVGYCLKAAEQLAKEG 879
            ENE+LYG++FP++ + LD  F LPIGKAK+ REGK VT+V+FSKMVG+ LKAAE+LA+EG
Sbjct: 204  ENELLYGESFPISEEALDSSFCLPIGKAKIEREGKDVTIVTFSKMVGFALKAAEKLAEEG 263

Query: 880  IDCEVINLRSIKPLDRDTLLASVKKTHKIISVEEGWPQCGVGSEISAVMMELAFDELDAP 1059
            I  EVINLRSI+PLDR T+ ASV+KT ++++VEEG+PQ GV +EI A ++E +F  LDAP
Sbjct: 264  ISAEVINLRSIRPLDRATINASVRKTSRLVTVEEGFPQHGVCAEICASVVEESFSYLDAP 323

Query: 1060 VLRVTGAEVPMPYAANLEAAALPQIDDIIKAVK 1158
            V R+ GA+VP+PY ANLE  ALPQI+DI++A K
Sbjct: 324  VERIAGADVPIPYTANLERLALPQIEDIVRASK 356

>gb|AAC72193.1| pyruvate dehydrogenase E1 beta subunit isoform 2 [Zea mays]
          Length = 374

 Score =  483 bits (1242), Expect = e-135
 Identities = 232/330 (70%), Positives = 286/330 (86%)
 Frame = +1

Query: 169  RGFASQVSEMTVRDALNSALDEELARDDKVYVLGEEVGEYQGAYKITRGLLQKYGPDRVK 348
            RG+++   EMTVRDALNSALDEE++ D  V+++GEEVGEYQGAYKI++GLL +YGPDRV 
Sbjct: 32   RGYSAAAKEMTVRDALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDRYGPDRVL 91

Query: 349  DTPITEAGFTGIAVGSAFAGLRPVCEFMTWNFAMQAIDQIINSAAKTLYMSAGQINCPIV 528
            DTPITEAGFTGI VG+A+ GLRP+ EFMT+NF+MQAID IINSAAK+ YMSAGQI+ PIV
Sbjct: 92   DTPITEAGFTGIGVGAAYHGLRPIIEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIV 151

Query: 529  FRGPNGAAAGVAAQHSQCFASWYSSVPGLKVLAPYDSEDARGLMKAAIRDPDPVVFLENE 708
            FRGPNGAAAGV AQHSQC+A+W++ VPGLKVL PY SEDARGL+KAAIRDPDPV+FLENE
Sbjct: 152  FRGPNGAAAGVGAQHSQCYAAWFAHVPGLKVLTPYSSEDARGLLKAAIRDPDPVIFLENE 211

Query: 709  ILYGQAFPVTPQVLDKDFVLPIGKAKVMREGKHVTLVSFSKMVGYCLKAAEQLAKEGIDC 888
            +LYG++FPV+ +VLD  F LPIGKAK+ REGK VT+ +FSKMVGY L+AAE L+KEGI  
Sbjct: 212  LLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKMVGYALQAAEILSKEGISA 271

Query: 889  EVINLRSIKPLDRDTLLASVKKTHKIISVEEGWPQCGVGSEISAVMMELAFDELDAPVLR 1068
            EVINLRSI+PLDR  + ASV+KT+++++VEEG+PQ G+G+EI   ++E +F  LDAPV R
Sbjct: 272  EVINLRSIRPLDRAAINASVRKTNRLVTVEEGFPQHGIGAEICMSVVEESFAYLDAPVER 331

Query: 1069 VTGAEVPMPYAANLEAAALPQIDDIIKAVK 1158
            + GA+VPMPYAANLE  A+PQ+DDI++A K
Sbjct: 332  IAGADVPMPYAANLERMAVPQVDDIVRAAK 361

>gb|AAC72194.1| pyruvate dehydrogenase E1 beta subunit isoform 3 [Zea mays]
          Length = 374

 Score =  482 bits (1241), Expect = e-135
 Identities = 233/330 (70%), Positives = 285/330 (85%)
 Frame = +1

Query: 169  RGFASQVSEMTVRDALNSALDEELARDDKVYVLGEEVGEYQGAYKITRGLLQKYGPDRVK 348
            RG+++   EMTVRDALNSALDEE++ D  V+++GEEVGEYQGAYKI++GLL KYGPDRV 
Sbjct: 32   RGYSAAAKEMTVRDALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRVL 91

Query: 349  DTPITEAGFTGIAVGSAFAGLRPVCEFMTWNFAMQAIDQIINSAAKTLYMSAGQINCPIV 528
            DTPITEAGFTGI VG+A+ GLRPV EFMT+NF+MQAID IINSAAK+ YMSAGQI+ PIV
Sbjct: 92   DTPITEAGFTGIGVGAAYQGLRPVIEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIV 151

Query: 529  FRGPNGAAAGVAAQHSQCFASWYSSVPGLKVLAPYDSEDARGLMKAAIRDPDPVVFLENE 708
            FRGPNGAAAGV AQHSQC+A W++ VPGLKVL PY SEDARGL+KAAIRDPDPV+FLENE
Sbjct: 152  FRGPNGAAAGVGAQHSQCYAVWFAHVPGLKVLTPYSSEDARGLLKAAIRDPDPVIFLENE 211

Query: 709  ILYGQAFPVTPQVLDKDFVLPIGKAKVMREGKHVTLVSFSKMVGYCLKAAEQLAKEGIDC 888
            +LYG++FPV+ +VLD  F LPIGKAK+ R GK VT+ +FSKMVGY L+AAE L+KEGI  
Sbjct: 212  LLYGESFPVSAEVLDSSFCLPIGKAKIERGGKDVTITAFSKMVGYALQAAEILSKEGISA 271

Query: 889  EVINLRSIKPLDRDTLLASVKKTHKIISVEEGWPQCGVGSEISAVMMELAFDELDAPVLR 1068
            EVINLRSI+PLDR  + ASV+KT+++++VEEG+PQ G+G+EI   ++E +F+ LDAPV R
Sbjct: 272  EVINLRSIRPLDRAAINASVRKTNRLVTVEEGFPQHGIGAEICMSVVEESFEYLDAPVER 331

Query: 1069 VTGAEVPMPYAANLEAAALPQIDDIIKAVK 1158
            + GA+VPMPYAANLE  A+PQ+DDI++A K
Sbjct: 332  IAGADVPMPYAANLERMAVPQVDDIVRAAK 361

>gb|AAC72192.1| pyruvate dehydrogenase E1 beta subunit isoform 1 [Zea mays]
          Length = 373

 Score =  481 bits (1237), Expect = e-134
 Identities = 231/330 (70%), Positives = 288/330 (87%)
 Frame = +1

Query: 169  RGFASQVSEMTVRDALNSALDEELARDDKVYVLGEEVGEYQGAYKITRGLLQKYGPDRVK 348
            R +++   E+TVR+ALN+ALDEE++ D  V+++GEEVGEYQGAYKI++GLL KYGPDRV 
Sbjct: 30   RTYSAAAKEITVREALNTALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRVL 89

Query: 349  DTPITEAGFTGIAVGSAFAGLRPVCEFMTWNFAMQAIDQIINSAAKTLYMSAGQINCPIV 528
            DTPITEAGFTGI VG+A+ GLRP+ EFMT+NF+MQAID IINSAAK+ YMSAGQI+ PIV
Sbjct: 90   DTPITEAGFTGIGVGAAYHGLRPIVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIV 149

Query: 529  FRGPNGAAAGVAAQHSQCFASWYSSVPGLKVLAPYDSEDARGLMKAAIRDPDPVVFLENE 708
            FRGPNGAAAGV AQHSQC+A+WY+ VPGLKVLAPY +EDARGL+KAAIRDPDPVVFLENE
Sbjct: 150  FRGPNGAAAGVGAQHSQCYAAWYAHVPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLENE 209

Query: 709  ILYGQAFPVTPQVLDKDFVLPIGKAKVMREGKHVTLVSFSKMVGYCLKAAEQLAKEGIDC 888
            +LYG++FPV+ +VLD  F LPIGKAK+ R+GK VT+ +FSKMVGY L+AA+ LAKEGI  
Sbjct: 210  LLYGESFPVSAEVLDSSFCLPIGKAKIERQGKDVTITAFSKMVGYALQAADILAKEGISA 269

Query: 889  EVINLRSIKPLDRDTLLASVKKTHKIISVEEGWPQCGVGSEISAVMMELAFDELDAPVLR 1068
            EVINLRSI+PLDR T+ ASV+KT+++++VEEG+PQ G+G+EI   ++E +F+ LDAPV R
Sbjct: 270  EVINLRSIRPLDRATINASVRKTNRLVTVEEGFPQHGIGAEICMSVVEDSFEYLDAPVER 329

Query: 1069 VTGAEVPMPYAANLEAAALPQIDDIIKAVK 1158
            + GA+VPMPYAANLE  A+PQ+DDI++A K
Sbjct: 330  IAGADVPMPYAANLERMAVPQVDDIVRAAK 359



EST assemble image


clone accession position
1 LC053d06_r AV622710 1 504
2 LC097f01_r AV625767 47 517
3 HC007e09_r AV632386 61 565
4 HC006h12_r AV632341 402 804
5 HC065a05_r AV636845 453 912
6 CM071c11_r AV391347 660 1256




Chlamydomonas reinhardtii
Kazusa DNA Research Institute