KCC001618A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001618A_C01 KCC001618A_c01
cgGAACAAACTATTACAGTCCCAAGCCGGCTTCATCAATAGCATGGATGGCTTTATTGGG
TCCTTTATTTATCGCGCATGGCAACCGCTCAAGCCGTGCCGGCCCATGTGTTGCCATGTC
AGTCAGCGCACTCCGCCCTGCCGCCTCTGCCGTCTCGACCAAACTAGGGACAACTTGGCA
ACTCCTCTGCCGCGCATCGGACCTCCTACCGCACCGCCTCAATCAACGCAACGCAGCCAC
CAGCCCGGGACCCATTCATCCCCAGCCCAAGTATACAATTGTGTGTATTGGTACACGAGC
CTGGTATCACCCAACACGCAACGCAGTCCTGCCGTGTCCGTGTGTAATACCGCACGCGCG
TATACCAGGAAAGAAGGTCTGGGACAAACGCCCACCGCCAAGTCTTTCGCCATGCGGTGG
GCGCTCCTTGTCCAGCACCCAGCGGCGGCCACAACTCCTGTGCCCAACACCCCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001618A_C01 KCC001618A_c01
         (474 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC04105.1| unnamed protein product [Homo sapiens]                 38  0.053
ref|XP_327085.1| hypothetical protein ( hypothetical protein B14...    35  0.16
ref|XP_307456.1| ENSANGP00000012943 [Anopheles gambiae] gi|21290...    36  0.26
emb|CAE02830.1| OSJNBa0043A12.35 [Oryza sativa (japonica cultiva...    36  0.26
gb|AAQ88736.1| EGFL5 [Homo sapiens]                                    36  0.26

>dbj|BAC04105.1| unnamed protein product [Homo sapiens]
          Length = 704

 Score = 38.1 bits (87), Expect = 0.053
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +1

Query: 58  GSFIYRAWQPLKPCRPMCCHVS--QRTPPCRLCRLDQTRDNLATPLPRIGPPTAPPQSTQ 231
           G+   R+  P+ P RP  CH+   Q  P        Q +    TP PR GPP+APP   +
Sbjct: 52  GALTSRSPGPVAPQRP--CHLKGWQHRPTQHNAACKQGQAAAQTP-PRPGPPSAPPPPPK 108

Query: 232 RSHQPGTHSSPA 267
             HQ G    PA
Sbjct: 109 EGHQEGLVELPA 120

>ref|XP_327085.1| hypothetical protein ( hypothetical protein B14D6.340 [imported] -
            Neurospora crassa  ) gi|11359441|pir||T49482 hypothetical
            protein B14D6.340 [imported] - Neurospora crassa
            gi|7899338|emb|CAB91743.1| hypothetical protein
            [Neurospora crassa] gi|28925326|gb|EAA34404.1|
            hypothetical protein ( hypothetical protein B14D6.340
            [imported] - Neurospora crassa  )
          Length = 1176

 Score = 34.7 bits (78), Expect(2) = 0.16
 Identities = 26/79 (32%), Positives = 31/79 (38%), Gaps = 8/79 (10%)
 Frame = +2

Query: 245  PGPIHPQPKYTIVCIGTRAWYHPTRNAVLP------CPCVIPHARIPGKKVWDKRPP--P 400
            PGP   QP          +W HPT    LP       P + PHA  P       +PP  P
Sbjct: 996  PGPSPQQPP------PPASWGHPTSGPTLPPPQQARSPYIPPHAHHPQGPPPPAQPPTLP 1049

Query: 401  SLSPCGGRSLSSTQRRPQL 457
            S+SP G   + S    P L
Sbjct: 1050 SISPAGTPRIKSEPGLPSL 1068

 Score = 20.8 bits (42), Expect(2) = 0.16
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = +1

Query: 184  PLPRIGPPTAPPQSTQRSHQPGTHSSPA 267
            P P   PP  PP S +    P     P+
Sbjct: 972  PPPPPPPPPPPPPSARGRQMPPIQPGPS 999

>ref|XP_307456.1| ENSANGP00000012943 [Anopheles gambiae] gi|21290915|gb|EAA03060.1|
           ENSANGP00000012943 [Anopheles gambiae str. PEST]
          Length = 460

 Score = 35.8 bits (81), Expect = 0.26
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 160 QTRDNLATPLPRIGPPTAPPQSTQRSHQ--PGTHSSPAQVYNC 282
           QTR    TP P    PTAPP+ST  S Q     ++ PA+ +NC
Sbjct: 141 QTRGVTPTPAPLRTKPTAPPRSTGPSRQWAQNNNNEPARCFNC 183

>emb|CAE02830.1| OSJNBa0043A12.35 [Oryza sativa (japonica cultivar-group)]
          Length = 464

 Score = 35.8 bits (81), Expect = 0.26
 Identities = 16/52 (30%), Positives = 24/52 (45%)
 Frame = +1

Query: 187 LPRIGPPTAPPQSTQRSHQPGTHSSPAQVYNCVYWYTSLVSPNTQRSPAVSV 342
           +P    P  PP    R+H P   S   + Y+  YW  + + P +  +PAV V
Sbjct: 75  IPASSDPDHPPPRPPRAHSPYPDSPLIKQYSAEYWLLASLQPGSSSAPAVRV 126

>gb|AAQ88736.1| EGFL5 [Homo sapiens]
          Length = 258

 Score = 35.8 bits (81), Expect = 0.26
 Identities = 33/107 (30%), Positives = 42/107 (38%), Gaps = 10/107 (9%)
 Frame = +1

Query: 184 PLPRIGPPTA------PPQSTQRSHQPGTHSSPAQVYNCV-YWYTSLVSPNTQRSPAVSV 342
           P PR   PTA      PP++T   H+P   +SPAQ       W T+  S  T ++P    
Sbjct: 56  PFPRATAPTAQAPRTGPPRATV--HRPLAATSPAQSPETTPLWATAGPSSTTFQAPLGPS 113

Query: 343 CNTARAYTRKEGLGQTPTAKS---FAMRWALLVQHPAAATTPVPNTP 474
             T  A  R     Q PT  +    +         P A T P P TP
Sbjct: 114 PTTPPAAERTSTTSQAPTRPAPTTLSTTTGPAPTTPVATTVPAPTTP 160



EST assemble image


clone accession position
1 LCL019e02_r AV626992 1 402
2 LC074a04_r AV624176 51 522
3 CM070g12_r AV391284 175 536




Chlamydomonas reinhardtii
Kazusa DNA Research Institute