KCC001597A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001597A_C01 KCC001597A_c01
GAAGACGATATGCTTTAGTCTTTCGCGCTAGCGACTGCAATCACATCTCCGAGGCCAAAC
ACCTTTCTCAAAAATGGTAGACCTCACCCGTCCTATCGTGTGGTTCTATTTGCCAGTCAC
TATAACCTGGATCTGCTTTGTCATTTCGGTCGGCAATCCCCAATACTTCATTGACTACAA
CTGGCTATGGCTCTTGTTCCGGAGCATGTCCCCCTACTTCTGGTCGGCGCTTGGCGTGGC
GCTGGCCGTAGGCATGTCCATTCTGGGCGCTGCCTGGGGCATCTTCATCACCGGGTCCTC
GCTGGTTGGAGCGGCTATCCGTGTTCCTCGCATTACGTCTAAGAATTTGATCAGCGTCAT
TTTCTGCGAGGCCGTGGCCATCTACGGCGTTATTGTGGCTATCATCCTTCAAACGAAAAT
TGAGCGCGTGGACCCGGTCGATGGCGTGTATGACAAGTACGCGCTGGCGGCAGGCTACTC
GATCTTCGGCTCTGGTGTCACTTGCGGTTTCGCCAACCTGGTCTGCGGCATGTGCGTGGG
CATTGTCGGCAGCAGCTGCGCCCCCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001597A_C01 KCC001597A_c01
         (566 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO73433.1| vacuolar membrane ATPase subunit c'' [Citrus limon]    179  2e-44
ref|NP_180132.1| H+-transporting two-sector ATPase, C subunit fa...   179  2e-44
ref|NP_194979.1| H+-pumping ATPase proteolipid, vacuolar, putati...   179  2e-44
dbj|BAB21282.1| putative H+-transporting ATPase [Oryza sativa (j...   175  3e-43
ref|NP_011891.1| vacuolar ATPase V0 domain subunit c''; Ppa1p [S...   151  7e-36

>gb|AAO73433.1| vacuolar membrane ATPase subunit c'' [Citrus limon]
          Length = 182

 Score =  179 bits (454), Expect = 2e-44
 Identities = 87/119 (73%), Positives = 105/119 (88%)
 Frame = +2

Query: 206 MSPYFWSALGVALAVGMSILGAAWGIFITGSSLVGAAIRVPRITSKNLISVIFCEAVAIY 385
           +SPY +SA+G+A+A+G+S+LGAAWGI+ITGSSL+GAAI+ PRITSKNLISVIFCEAVAIY
Sbjct: 20  ISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIY 79

Query: 386 GVIVAIILQTKIERVDPVDGVYDKYALAAGYSIFGSGVTCGFANLVCGMCVGIVGSSCA 562
           GVIVAIILQTK+E V P   +Y   +L AGY+IF SG+  GFANLVCG+CVGI+GSSCA
Sbjct: 80  GVIVAIILQTKLESV-PASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCA 137

>ref|NP_180132.1| H+-transporting two-sector ATPase, C subunit family [Arabidopsis
           thaliana] gi|25290612|pir||E84650 hypothetical protein
           At2g25610 [imported] - Arabidopsis thaliana
           gi|4874301|gb|AAD31363.1| putative vacuolar ATP synthase
           proteolipid subunit [Arabidopsis thaliana]
           gi|21536776|gb|AAM61108.1| putative vacuolar ATP
           synthase proteolipid subunit [Arabidopsis thaliana]
          Length = 178

 Score =  179 bits (454), Expect = 2e-44
 Identities = 87/119 (73%), Positives = 105/119 (88%)
 Frame = +2

Query: 206 MSPYFWSALGVALAVGMSILGAAWGIFITGSSLVGAAIRVPRITSKNLISVIFCEAVAIY 385
           +SPY +SA+G+A+++G+S+LGAAWGI+ITGSSL+GAAI  PRITSKNLISVIFCEAVAIY
Sbjct: 18  ISPYTFSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIEAPRITSKNLISVIFCEAVAIY 77

Query: 386 GVIVAIILQTKIERVDPVDGVYDKYALAAGYSIFGSGVTCGFANLVCGMCVGIVGSSCA 562
           GVIVAIILQTK+E V P   +YD  +L AGY+IF SG+  GFANLVCG+CVGI+GSSCA
Sbjct: 78  GVIVAIILQTKLESV-PSSKMYDAESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCA 135

>ref|NP_194979.1| H+-pumping ATPase proteolipid, vacuolar, putative [Arabidopsis
           thaliana] gi|7436330|pir||T08586 probable H+-exporting
           ATPase (EC 3.6.3.6) 18K chain - Arabidopsis thaliana
           gi|4914450|emb|CAB43690.1| H+-transporting ATPase-like
           protein [Arabidopsis thaliana]
           gi|7270157|emb|CAB79970.1| H+-transporting ATPase-like
           protein [Arabidopsis thaliana]
           gi|14596151|gb|AAK68803.1| H+-transporting ATPase-like
           protein [Arabidopsis thaliana]
           gi|18377458|gb|AAL66895.1| unknown protein [Arabidopsis
           thaliana] gi|29423615|gb|AAO73432.1| vacuolar membrane
           ATPase subunit c'' [Arabidopsis thaliana]
          Length = 180

 Score =  179 bits (454), Expect = 2e-44
 Identities = 87/119 (73%), Positives = 105/119 (88%)
 Frame = +2

Query: 206 MSPYFWSALGVALAVGMSILGAAWGIFITGSSLVGAAIRVPRITSKNLISVIFCEAVAIY 385
           +SPY +SA+G+A+++G+S+LGAAWGI+ITGSSL+GAAI  PRITSKNLISVIFCEAVAIY
Sbjct: 20  ISPYTFSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIEAPRITSKNLISVIFCEAVAIY 79

Query: 386 GVIVAIILQTKIERVDPVDGVYDKYALAAGYSIFGSGVTCGFANLVCGMCVGIVGSSCA 562
           GVIVAIILQTK+E V P   +YD  +L AGY+IF SG+  GFANLVCG+CVGI+GSSCA
Sbjct: 80  GVIVAIILQTKLESV-PSSKMYDAESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCA 137

>dbj|BAB21282.1| putative H+-transporting ATPase [Oryza sativa (japonica
           cultivar-group)]
          Length = 176

 Score =  175 bits (444), Expect = 3e-43
 Identities = 87/119 (73%), Positives = 105/119 (88%)
 Frame = +2

Query: 206 MSPYFWSALGVALAVGMSILGAAWGIFITGSSLVGAAIRVPRITSKNLISVIFCEAVAIY 385
           +SPY +SA+G+A+++G+S+LGAAWGIFITGSSL+GAAI+ PRITSKNLISVIFCEAVAIY
Sbjct: 15  ISPYTFSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSKNLISVIFCEAVAIY 74

Query: 386 GVIVAIILQTKIERVDPVDGVYDKYALAAGYSIFGSGVTCGFANLVCGMCVGIVGSSCA 562
           GVIVAIILQTK+E V P   V+   +L AGY+IF SG+  GFANLVCG+CVGI+GSSCA
Sbjct: 75  GVIVAIILQTKLESV-PTALVHHPESLRAGYAIFASGLIVGFANLVCGVCVGIIGSSCA 132

>ref|NP_011891.1| vacuolar ATPase V0 domain subunit c''; Ppa1p [Saccharomyces
           cerevisiae] gi|130720|sp|P23968|VATO_YEAST Vacuolar ATP
           synthase 22 kDa proteolipid subunit
           gi|101508|pir||A34633 H+-exporting ATPase (EC 3.6.3.6)
           chain c.PPA1, vacuolar - yeast (Saccharomyces
           cerevisiae) gi|172221|gb|AAA34892.1| proteolipid protein
           of proton ATPase gi|500700|gb|AAB68881.1| Ppa1p:
           Proteolipid protein of proton ATPase [Saccharomyces
           cerevisiae]
          Length = 213

 Score =  151 bits (381), Expect = 7e-36
 Identities = 72/130 (55%), Positives = 99/130 (75%)
 Frame = +2

Query: 173 DYNWLWLLFRSMSPYFWSALGVALAVGMSILGAAWGIFITGSSLVGAAIRVPRITSKNLI 352
           D N+   L R+ SPY W+ LG+AL VG+S++GAAWGIFITGSS++GA +R PRIT+KNLI
Sbjct: 44  DINFGKFLLRT-SPYMWANLGIALCVGLSVVGAAWGIFITGSSMIGAGVRAPRITTKNLI 102

Query: 353 SVIFCEAVAIYGVIVAIILQTKIERVDPVDGVYDKYALAAGYSIFGSGVTCGFANLVCGM 532
           S+IFCE VAIYG+I+AI+  +K+  V   + +Y K  L  GYS+F +G+T G +NL+CG+
Sbjct: 103 SIIFCEVVAIYGLIIAIVFSSKL-TVATAENMYSKSNLYTGYSLFWAGITVGASNLICGI 161

Query: 533 CVGIVGSSCA 562
            VGI G++ A
Sbjct: 162 AVGITGATAA 171



EST assemble image


clone accession position
1 LC013a02_r AV619771 1 524
2 CM067d10_r AV390898 14 604




Chlamydomonas reinhardtii
Kazusa DNA Research Institute