KCC001588A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001588A_C01 KCC001588A_c01
caacaagacattccattctcagacggacggatggttctcggcacggtcagccttcgtgta
tgagaccaccactgaagcgcTGTTCTCAGGGCTGCAGGACATCATGCAGCGCACCACCCT
GCTGCCCATCGCCGACTACGTGCGCGAGGCGGAGTCGGGCTCGGGCCCCGCCTCATCGGC
CTCGGGCGCCAGCGAGCGCAGCCCAGCGCAGCTTCGGCTGCTAGAGGTGGCGGCAGGCAC
CGGCCGCTTCCACACCTTCATCAAGGATGCGTACCCCGACATGCGCACGGTGTGCTCCGA
CCTCAGCCCCTTCTACCTCGCCCGCGCGCGCAACAACATGCGCTACTGGCGGCGCTTGCG
TGCGCGCGGGCGGTTCCTGGGCGGAGTGGACGAGACCGGCACGGAGTTCCTGCAGACTGC
CGCGGAGGACATCGCCGCGCCCGACGACAGCTTTGACATCGTTGTGTGCGTGTACCTGTT
CCACGAGCTTCCCGAGGCGGTGCGGCGCCGCGCCGTGTCCGAGTTCGCGCGCGTGCTGCG
GCCGGGCGGTCTGCTGGTGCTCACAGACAGCGTGCAGCTGGGGGACAGGCCGGCGTGGGA
CAACACCATCGGCCTGTTCAGCAACTTCAACGAGCCCTACTACAGGAGCTACGTGGCCTG
CGACCTGGGCTCCATGTGCGAGGAGGCGGGCCTGACCCCCGACACCAAGTACCTGTGCTC
CGCCACCAAGACGCTCAGCTTCCGCAAGGCCGTGCCGGGCGAGGCGCCCGCAACCGCCCC
GGCCGCCGACAACTGAGCGGGAnGCGGTTGCAGACTTGTCATGTTCGACGCCAGCTGCGA
CAA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001588A_C01 KCC001588A_c01
         (843 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_682161.1| ORF_ID:tlr1371~putative methlytransferase [Ther...   130  2e-29
ref|NP_897165.1| SAM (and some other nucleotide) binding motif:G...   130  3e-29
ref|NP_894445.1| SAM (and some other nucleotide) binding motif:G...   129  6e-29
ref|NP_893039.1| SAM (and some other nucleotide) binding motif:G...   128  1e-28
ref|NP_875432.1| SAM-dependent methyltransferase [Prochlorococcu...   126  4e-28

>ref|NP_682161.1| ORF_ID:tlr1371~putative methlytransferase [Thermosynechococcus
           elongatus BP-1] gi|22295095|dbj|BAC08923.1|
           ORF_ID:tlr1371~putative methlytransferase
           [Thermosynechococcus elongatus BP-1]
          Length = 360

 Score =  130 bits (328), Expect = 2e-29
 Identities = 84/233 (36%), Positives = 117/233 (50%), Gaps = 3/233 (1%)
 Frame = +2

Query: 5   KTFHSQTDGWFSARSAFVYETTTEALFSGLQDIMQRTTLLPIADYVREAESGSGPASSAS 184
           + FH QTDG+ S  SA +Y+   E LF G  D M+R  + PIA  V              
Sbjct: 138 QNFHYQTDGYLSDTSANLYDIQVELLFGGTADAMRRRVIAPIAQQV-------------- 183

Query: 185 GASERSPAQLRLLEVAAGTGRFHTFIKDAYPDMRTVCSDLSPFYLARARNNMRYWRRLRA 364
             +      LR+L+VA GTGR    ++ A+P       DLSP YL +A   +        
Sbjct: 184 -VAHPPTPPLRILDVACGTGRTLKQLRYAFPGAVLFGLDLSPAYLRKANALL-------- 234

Query: 365 RGRFLGGVDETGT--EFLQTAAEDIAAPDDSFDIVVCVYLFHELPEAVRRRAVSEFARVL 538
                    +TG   + +Q  AE +   D  F  + CV+LFHELP  VR+  + E ARVL
Sbjct: 235 -------ATQTGALPQLIQGNAESLPYVDSYFSAITCVFLFHELPAPVRQNVIHECARVL 287

Query: 539 RPGGLLVLTDSVQLGDRPAWDNTIGLFSN-FNEPYYRSYVACDLGSMCEEAGL 694
           +PGG+ V+ DS+Q  D P     +  F+N F+EP+YR+Y+  DL    E+AGL
Sbjct: 288 QPGGIFVICDSIQSLDSPEQRPMMENFANLFHEPFYRNYIEDDLNLRLEKAGL 340

>ref|NP_897165.1| SAM (and some other nucleotide) binding motif:Generic
           methyl-transferase [Synechococcus sp. WH 8102]
           gi|33632776|emb|CAE07587.1| SAM (and some other
           nucleotide) binding motif:Generic methyl-transferase
           [Synechococcus sp. WH 8102]
          Length = 357

 Score =  130 bits (327), Expect = 3e-29
 Identities = 84/249 (33%), Positives = 121/249 (47%), Gaps = 1/249 (0%)
 Frame = +2

Query: 5   KTFHSQTDGWFSARSAFVYETTTEALFSGLQDIMQRTTLLPIADYVREAESGSGPASSAS 184
           + FH QTDG+ S  SA +Y+   E LF+G  D M+R  L P+   ++             
Sbjct: 129 QNFHHQTDGYLSDHSAGLYDLQVEILFNGTADAMRRRVLAPLKRGLKHF----------- 177

Query: 185 GASERSPAQLRLLEVAAGTGRFHTFIKDAYPDMRTVCSDLSPFYLARARNNMRYWRRLRA 364
             S+RSP+ LR+L++A GTGR    ++ A P    + +DLS  YL +A            
Sbjct: 178 --SDRSPSSLRVLDIATGTGRTLHQVRGALPHAELIGADLSEAYLRQAN----------- 224

Query: 365 RGRFLGGVDETGTEFLQTAAEDIAAPDDSFDIVVCVYLFHELPEAVRRRAVSEFARVLRP 544
             R+L        + ++   E +   D     V CV+L HELP   R+  ++E  RVL  
Sbjct: 225 --RWLNTGQSPLVQLIRANGEILPLADGGLQGVTCVFLLHELPAEARQNVINEAWRVLEH 282

Query: 545 GGLLVLTDSVQLGDRPAWDNTIGLFSN-FNEPYYRSYVACDLGSMCEEAGLTPDTKYLCS 721
           GG+ VL DSVQL D P +   +  F   F+EPYYR Y+A D+ +   +AG    T     
Sbjct: 283 GGVFVLADSVQLADSPQFHVAMDNFRRVFHEPYYRDYIADDIDARLIQAGFEAVTAETHF 342

Query: 722 ATKTLSFRK 748
            T+  S RK
Sbjct: 343 MTRVWSARK 351

>ref|NP_894445.1| SAM (and some other nucleotide) binding motif:Generic
           methyl-transferase [Prochlorococcus marinus str. MIT
           9313] gi|33634801|emb|CAE20787.1| SAM (and some other
           nucleotide) binding motif:Generic methyl-transferase
           [Prochlorococcus marinus str. MIT 9313]
          Length = 357

 Score =  129 bits (324), Expect = 6e-29
 Identities = 83/230 (36%), Positives = 121/230 (52%), Gaps = 1/230 (0%)
 Frame = +2

Query: 5   KTFHSQTDGWFSARSAFVYETTTEALFSGLQDIMQRTTLLPIADYVREAESGSGPASSAS 184
           + FH QTDG+ S  SA +Y+   E LF+G  D M+R  L P+   ++  +S         
Sbjct: 129 QNFHHQTDGYLSDHSAELYDLQVEILFNGTADSMRRRVLAPLKRGLKRFQS--------- 179

Query: 185 GASERSPAQLRLLEVAAGTGRFHTFIKDAYPDMRTVCSDLSPFYLARARNNMRYWRRLRA 364
               RS A LR+L+VA GTGR    I+ A P +  +  DLS  YL +A       R L +
Sbjct: 180 ----RSSASLRVLDVATGTGRTLQQIRSALPKVELLGLDLSAAYLRQAS------RSLNS 229

Query: 365 RGRFLGGVDETGTEFLQTAAEDIAAPDDSFDIVVCVYLFHELPEAVRRRAVSEFARVLRP 544
           R   L        + ++  AE +   D S   + CV+LFHELP + R+  + E  RVL P
Sbjct: 230 RNGELA-------QLVRGNAEQLPFADQSVQGITCVFLFHELPSSARQNVLDECWRVLEP 282

Query: 545 GGLLVLTDSVQLGDRPAWDNTIGLFSN-FNEPYYRSYVACDLGSMCEEAG 691
           GG+LVL DSVQ+ D P +   +  F   F+EPYYR Y++ ++ +  + +G
Sbjct: 283 GGVLVLADSVQMEDSPKFIPAMENFRRIFHEPYYRDYISDNIEARFQASG 332

>ref|NP_893039.1| SAM (and some other nucleotide) binding motif:Generic
           methyl-transferase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1378] gi|33634055|emb|CAE19380.1| SAM
           (and some other nucleotide) binding motif:Generic
           methyl-transferase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 351

 Score =  128 bits (321), Expect = 1e-28
 Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 1/230 (0%)
 Frame = +2

Query: 5   KTFHSQTDGWFSARSAFVYETTTEALFSGLQDIMQRTTLLPIADYVREAESGSGPASSAS 184
           + FH QTDG+ S  SA +Y+   E LF+G  D M+R  + P+ +               +
Sbjct: 129 RNFHHQTDGYLSDFSASIYDLQVEILFNGSADAMRRRIIKPLKE-------------GLN 175

Query: 185 GASERSPAQLRLLEVAAGTGRFHTFIKDAYPDMRTVCSDLSPFYLARARNNMRYWRRLRA 364
               R  + L++L+VA G+GR    ++ A+P  + +  DLS  YL  A            
Sbjct: 176 NFGNRKKSSLKILDVATGSGRTLKQLRGAFPKEKIIGLDLSGSYLKEA------------ 223

Query: 365 RGRFLGGVDETGTEFLQTAAEDIAAPDDSFDIVVCVYLFHELPEAVRRRAVSEFARVLRP 544
             RF+  ++    E ++  AE++   D+S   + CVYLFHELP  VR   + EF RVL P
Sbjct: 224 -SRFISNLNGDLIELIKGNAENLPFEDNSIQGITCVYLFHELPRTVRENVLKEFFRVLEP 282

Query: 545 GGLLVLTDSVQLGDRPAWDNTI-GLFSNFNEPYYRSYVACDLGSMCEEAG 691
            G+L+L DS+Q  D P +   +   + +F+EP+Y  Y+  D+ S  ++ G
Sbjct: 283 DGILILADSIQENDSPDFIQIMENFYKSFHEPFYCDYIKEDITSKIKDIG 332

>ref|NP_875432.1| SAM-dependent methyltransferase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375] gi|33238018|gb|AAQ00085.1|
           SAM-dependent methyltransferase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 355

 Score =  126 bits (317), Expect = 4e-28
 Identities = 73/230 (31%), Positives = 118/230 (50%), Gaps = 1/230 (0%)
 Frame = +2

Query: 5   KTFHSQTDGWFSARSAFVYETTTEALFSGLQDIMQRTTLLPIADYVREAESGSGPASSAS 184
           + FH QTDG+ S  SA +Y+   E LF+G  D M+R  + P+ + +              
Sbjct: 129 QNFHHQTDGYLSDHSAELYDMQVEILFNGTADAMRRRVISPLKEGLE------------L 176

Query: 185 GASERSPAQLRLLEVAAGTGRFHTFIKDAYPDMRTVCSDLSPFYLARARNNMRYWRRLRA 364
           G S  + A  ++L++A GTGR    I+ A P++  V  DLS  YL +A   +  +++   
Sbjct: 177 GFSSNNFANYKVLDIATGTGRTLKQIRSAIPEIELVGLDLSTSYLKQASKYLNNYQKSEL 236

Query: 365 RGRFLGGVDETGTEFLQTAAEDIAAPDDSFDIVVCVYLFHELPEAVRRRAVSEFARVLRP 544
                        + ++  AE +   D+SF  + CV+LFHELP   R+  + E  RVL+P
Sbjct: 237 ------------VQLVKGNAERMPLLDNSFHAITCVFLFHELPSKARQNVLKECFRVLKP 284

Query: 545 GGLLVLTDSVQLGDRPAWDNTI-GLFSNFNEPYYRSYVACDLGSMCEEAG 691
            G L+L DS+Q+ D P +   +   +  F+EPYYR+Y+  D+     ++G
Sbjct: 285 NGSLILADSIQINDSPQFTQVMENFYRIFHEPYYRNYIKDDINLRLTDSG 334



EST assemble image


clone accession position
1 HC002f04_r AV631993 1 502
2 CM065g09_r AV391135 292 883




Chlamydomonas reinhardtii
Kazusa DNA Research Institute