KCC001582A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001582A_C01 KCC001582A_c01
TGAAGTACAACCACTGGGAGCTCAAGGTGCCTGCCTGCTGCGCGTGGAGCTGGGACCCAA
GGACATGGACAACGCCGCGGTCATGACCTGCCGCCGCGACACCGGCGCCAAGGAGTGTGG
TGCCGTGGGCGGACGTGGCCACGCGCATCCCGGAGCTGCTGGAGACCATCCAGGCCGACA
TGTTCGCCGCCGCCAAGTCGCGCACCGCCAACTGCACCGAGACCTGCCACAGCTGGGAGT
GAGTTCATGGCTGGCTGCTGGGCAACAAGCACATGGCGCTCACGCCCTGGGCCGACGAGG
AGGAGATCGAGGAGGAGGTGAAGAAGAAGTCCACCACCCCCGACGCCATGGGCGCTAAGA
CGCTGTGCCTGCCCTTCGAGGCGCCGCCGCTGCCCGAGGGCACCAAGTGCTTCTACTCGG
GCAAGCCCGCCAAGAACTGGGCGCTGTGGGGCCGCTCCTACTAAGGCGACGGCGGCAGCA
GCAGTGGCAGCAGTGGAGGCGGCAGCTTAGGATGCAGCAGCAGCAGCTGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001582A_C01 KCC001582A_c01
         (530 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_191771.1| multifunctional aminoacyl-tRNA ligase-related p...   108  3e-23
ref|NP_196649.1| hypothetical protein [Arabidopsis thaliana] gi|...    99  7e-23
dbj|BAC78194.1| prolyl-tRNA synthetase [Raphanus sativus]              93  2e-18
gb|EAA21431.1| prolyl-tRNA synthetase, putative [Plasmodium yoel...    79  1e-16
ref|NP_011884.1| Protein required for cell viability; Yhr020wp [...    79  2e-16

>ref|NP_191771.1| multifunctional aminoacyl-tRNA ligase-related protein [Arabidopsis
           thaliana] gi|30695549|ref|NP_850736.1| multifunctional
           aminoacyl-tRNA ligase-related protein [Arabidopsis
           thaliana] gi|11279771|pir||T48004 multifunctional
           aminoacyl-tRNA ligase-like protein - Arabidopsis
           thaliana gi|6899922|emb|CAB71872.1| multifunctional
           aminoacyl-tRNA ligase-like protein [Arabidopsis
           thaliana] gi|16648885|gb|AAL24294.1| multifunctional
           aminoacyl-tRNA ligase-like protein [Arabidopsis
           thaliana] gi|22136084|gb|AAM91120.1| multifunctional
           aminoacyl-tRNA ligase-like protein [Arabidopsis
           thaliana]
          Length = 530

 Score =  108 bits (271), Expect = 3e-23
 Identities = 61/154 (39%), Positives = 80/154 (51%), Gaps = 1/154 (0%)
 Frame = +3

Query: 3   KYNHWELK-VPACCAWSWDPRTWTTPRS*PAAATPAPRSVVPWADVATRIPELLETIQAD 179
           KY+ WE+K VP        PR     +          +  +P   +   + ELLE IQ +
Sbjct: 381 KYSDWEMKGVPLRIEIG--PRDLENDQVRTVRRDNGVKEDIPRGSLVEHVKELLEKIQQN 438

Query: 180 MFAAAKSRTANCTETCHSWE*VHGWLLGNKHMALTPWADEEEIEEEVKKKSTTPDAMGAK 359
           M+  AK +   C +   +W+      L  K + L PW DEEE+E +VK + T  +   AK
Sbjct: 439 MYEVAKQKREACVQEVKTWDEFIK-ALNEKKLILAPWCDEEEVERDVKAR-TKGETGAAK 496

Query: 360 TLCLPFEAPPLPEGTKCFYSGKPAKNWALWGRSY 461
           TLC PF+ P LPEGT CF SGKPAK W  WGRSY
Sbjct: 497 TLCSPFDQPELPEGTLCFASGKPAKKWTYWGRSY 530

>ref|NP_196649.1| hypothetical protein [Arabidopsis thaliana] gi|11358291|pir||T50797
           hypothetical protein T30N20_150 - Arabidopsis thaliana
           gi|8979722|emb|CAB96843.1| putative protein [Arabidopsis
           thaliana]
          Length = 309

 Score = 98.6 bits (244), Expect(2) = 7e-23
 Identities = 48/114 (42%), Positives = 69/114 (60%), Gaps = 4/114 (3%)
 Frame = +3

Query: 132 DVATRIPELLETIQADMFAAAKSRTANCTETCHSWE*VHGWLLGNKHMALTPWADEEEIE 311
           D+  ++ +LLE IQ++++  AK +   CT+   +W+      L  K + L PW D+ E+E
Sbjct: 197 DLIEQVKDLLEKIQSNLYDVAKRKVEECTQKVETWD-EFVEALSQKKLILAPWCDKVEVE 255

Query: 312 EEVKKKS----TTPDAMGAKTLCLPFEAPPLPEGTKCFYSGKPAKNWALWGRSY 461
           ++VK+++    T     GAKTLC P E P L E T CF SGKPAK W+ WGRSY
Sbjct: 256 KDVKRRTRGDETGGGGGGAKTLCTPLEQPELGEETLCFASGKPAKKWSYWGRSY 309

 Score = 30.0 bits (66), Expect(2) = 7e-23
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 38  LRVELGPKDMDNAAVMTCRRDTGAK 112
           LR+E GP+D+ N  V    RD GAK
Sbjct: 166 LRIETGPRDLANDQVRIVTRDNGAK 190

>dbj|BAC78194.1| prolyl-tRNA synthetase [Raphanus sativus]
          Length = 220

 Score = 92.8 bits (229), Expect = 2e-18
 Identities = 55/143 (38%), Positives = 74/143 (51%), Gaps = 1/143 (0%)
 Frame = +3

Query: 3   KYNHWELK-VPACCAWSWDPRTWTTPRS*PAAATPAPRSVVPWADVATRIPELLETIQAD 179
           KY++WE+K VP        PR     +          +  +P   +   + ELLE IQ +
Sbjct: 82  KYSNWEMKGVPLRIEIG--PRDLENDQVRTVRRDNGAKEDIPRGSLVEHVKELLEKIQEN 139

Query: 180 MFAAAKSRTANCTETCHSWE*VHGWLLGNKHMALTPWADEEEIEEEVKKKSTTPDAMGAK 359
           M+  AK++   C E   +W+      L  K + L PW DEEE+E +VK + T  +   AK
Sbjct: 140 MYEVAKAKREACVEEIKTWD-EFIVALNKKKLILAPWCDEEEVERDVKAR-TKGETGAAK 197

Query: 360 TLCLPFEAPPLPEGTKCFYSGKP 428
           TLC PFE P LPEGT CF SGKP
Sbjct: 198 TLCSPFEQPELPEGTLCFASGKP 220

>gb|EAA21431.1| prolyl-tRNA synthetase, putative [Plasmodium yoelii yoelii]
          Length = 728

 Score = 78.6 bits (192), Expect(2) = 1e-16
 Identities = 43/113 (38%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
 Frame = +3

Query: 153 ELLETIQADMFAAAKSRTANCTETCHSWE*VHGWLLGNKHMALTPWADEEEIEEEVKKKS 332
           ++L  I  ++F  AK +  +      S++ V    L  K M L PW ++   EEE+KK++
Sbjct: 617 QMLVDIHKNLFLKAKKKLDDSIVQITSFDQVMD-ALNKKKMVLAPWCEDITTEEEIKKET 675

Query: 333 ---------TTPDAMGA-KTLCLPFEAPPLPEGTKCFYSGKPAKNWALWGRSY 461
                    T     GA K LC+P + PP+P  TKCF++GKPAK W L+GRSY
Sbjct: 676 QRLSMNQTNTETSLSGAMKPLCIPLDQPPMPPNTKCFWTGKPAKRWCLFGRSY 728

 Score = 28.9 bits (63), Expect(2) = 1e-16
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 38  LRVELGPKDMDNAAVMTCRRDTGAK 112
           +R+E+GPKD+ N + +  RRD   K
Sbjct: 579 IRIEVGPKDIQNNSCVFVRRDNNQK 603

>ref|NP_011884.1| Protein required for cell viability; Yhr020wp [Saccharomyces
           cerevisiae] gi|731640|sp|P38708|YHI0_YEAST Putative
           prolyl-tRNA synthetase YHR020W (Proline--tRNA ligase)
           (ProRS) gi|626755|pir||S46774 multifunctional amino
           acid-tRNA ligase homolog - yeast  (Saccharomyces
           cerevisiae) gi|500692|gb|AAB68873.1| Yhr020wp
           [Saccharomyces cerevisiae]
          Length = 688

 Score = 79.0 bits (193), Expect(2) = 2e-16
 Identities = 46/129 (35%), Positives = 68/129 (52%), Gaps = 14/129 (10%)
 Frame = +3

Query: 117 VVPWADVATRIPELLETIQADMFAAAKSRTANCTETCHSWE*VHGWL--LGNKHMALTPW 290
           VV + ++  RIPE+LE +Q D+F  AK          + W    G++  L  K++ L PW
Sbjct: 563 VVSFDELEARIPEILEEMQGDLFKKAKELFDTHRVIVNEWS---GFVPALNKKNVILAPW 619

Query: 291 ADEEEIEEEVKKKSTTPD------------AMGAKTLCLPFEAPPLPEGTKCFYSGKPAK 434
               E EE++K+ S   D            +MGAK+LC+PF+ P L EG KC    + A 
Sbjct: 620 CGVMECEEDIKESSAKKDDGEEFEEDDKAPSMGAKSLCIPFDQPVLNEGQKCIKCERIAV 679

Query: 435 NWALWGRSY 461
           N+ ++GRSY
Sbjct: 680 NYCMFGRSY 688

 Score = 28.1 bits (61), Expect(2) = 2e-16
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 38  LRVELGPKDMDNAAVMTCRRDTGAK 112
           +R+ELGPKD++   V+  RR+   K
Sbjct: 537 IRIELGPKDIEKNQVVVVRRNDSKK 561



EST assemble image


clone accession position
1 LC083h03_r AV624870 1 615
2 CM065e05_r AV391165 108 631




Chlamydomonas reinhardtii
Kazusa DNA Research Institute