KCC001578A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001578A_C01 KCC001578A_c01
gcaccagggaggggttggaagattgtgcgcaagaagtggcagcttgcctgccgtatgatt
catttctgtccatcaggaggTTTGTCGCCGTTCCCTGAGAAGTCGGGCTGTGGGCTGCTG
GTGCTGTGTGTGGGTGAGCAGCCGGTCGGGCAGGGAGCCTGACGCGACGTAAGCCGTCAG
GTGCGCGCCAGTGACCCGATTGCATCCGACGCACCTCCGATGCATGGCCCTTGCACCTGA
CGTGAGAGGACGACGGAGCTGTCCAGAGCGTGGGCTGCTCAGGGTGTGGGCTGGTGCTGG
TACGTGCAATAGCCGGCCGCAACCCGAGCATGTGCGTAGGAGTGGGACTGGGACTTATGG
GTGTCGATGAAGTGCGCGAGCTTGCCACAGGGAAAGTGAACACGCAGGACGAAGCATGTG
TTAAAGAGCACAAGGAAAGGCCATGCGCGCAGGACAGTGTATGCGATGCGGAGGCACGGC
TGCGGACTTCCGACCAAGCATGTGTGTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTTTGCAGCGTGTGTATTGGGAACCGCCGGAGAGCGGATCACATGTGTTGTGCTGGTGT
CAGGCAATAGTACT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001578A_C01 KCC001578A_c01
         (614 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC87289.1| unnamed protein product [Homo sapiens]                 51  1e-05
dbj|BAC87264.1| unnamed protein product [Homo sapiens]                 50  2e-05
dbj|BAC04906.1| unnamed protein product [Homo sapiens]                 50  3e-05
dbj|BAC87117.1| unnamed protein product [Homo sapiens]                 49  8e-05
ref|XP_310629.1| ENSANGP00000023115 [Anopheles gambiae] gi|30177...    47  2e-04

>dbj|BAC87289.1| unnamed protein product [Homo sapiens]
          Length = 377

 Score = 51.2 bits (121), Expect = 1e-05
 Identities = 51/163 (31%), Positives = 71/163 (43%), Gaps = 11/163 (6%)
 Frame = -2

Query: 562 PNTHAANTHTHTHTHTHM--HTHAWSEVRSRASASHTLSCAHGLSL-CSLT-----HASS 407
           P    A T TH H HTH+  HT + S   ++ ++SH+ +C+H  SL C  T     H  S
Sbjct: 54  PTRQIAPTPTHLHIHTHICPHTLSLSHTPTQCTSSHSHTCSHTHSLTCPHTLAPTRHTHS 113

Query: 406 CVFTFPVASSRTSS--TPISPSPTPTHMLGLRPAIARTSTSPHPEQPTLWTAPSSSHVRC 233
              T P   + T+S  T  + S TP H       I  T +  H   P    AP+ +    
Sbjct: 114 HACTHPHVQTHTASAYTFTTHSHTPGHTHSCSHLI-HTHSHAHSHPP---NAPTHT---- 165

Query: 232 KGHASEVRRMQSGHWRA-PDGLRRVRLPARPAAHPHTAPAAHS 107
             HA  +R     H R+ P  L  +  P  P AH H  P +H+
Sbjct: 166 --HAHTLRPTYCPHTRSHPMHLLTLIRPLTP-AHTHLTPGSHT 205

 Score = 47.0 bits (110), Expect = 2e-04
 Identities = 51/177 (28%), Positives = 70/177 (38%), Gaps = 15/177 (8%)
 Frame = -3

Query: 603 LTPAQHM*SALRRFPIHTLQTHTHTHTHTHTCTHMLGRKSAAVP--------PHRIHCPA 448
           LTP  H         +HT     HT +H HTC ++L       P        PH +HC  
Sbjct: 199 LTPGSHT-------HVHTPAHTPHTRSHNHTCLYLLTHACTNTPAYTSYTAHPHTLHCSP 251

Query: 447 RMAFPCAL*HMLRPACSLSLWQARALHRHP*VPVPLLRTCSGCGRLLHV---PAP-AHTL 280
                 A  HML P  SL+      +H H   P     T +    L H+    AP AHT 
Sbjct: 252 SHTHAPAHTHMLTPHHSLT-----HIHSHMIAPTHTSHTLARTHLLTHISRYSAPHAHTC 306

Query: 279 S-SPRSGQLR-RPLT-SGARAMHRRCVGCNRVTGAHLTAYVASGSLPDRLLTHTQHQ 118
           S +    QL  RP + + A   H      + +T AH+ ++  S  +     +HT HQ
Sbjct: 307 SHTSHITQLHTRPCSHTCAHTPHTIHSRTHPLTHAHVCSHTCS-PIHTHTSSHTSHQ 362

 Score = 43.9 bits (102), Expect = 0.002
 Identities = 52/199 (26%), Positives = 76/199 (38%), Gaps = 34/199 (17%)
 Frame = -2

Query: 595 STTHVIRSPAVPNTHAANTHTHTHTHT--------------HM----------HTH---- 500
           S +H+I + +  ++H  N  THTH HT              H+          HTH    
Sbjct: 143 SCSHLIHTHSHAHSHPPNAPTHTHAHTLRPTYCPHTRSHPMHLLTLIRPLTPAHTHLTPG 202

Query: 499 AWSEVRSRASASHTLSCAHGLSLCSLTHASSCVFTFPVASSRTSSTPISPSPT--PTHML 326
           + + V + A   HT S  H   L  LTHA +    +   ++   +   SPS T  P H  
Sbjct: 203 SHTHVHTPAHTPHTRSHNH-TCLYLLTHACTNTPAYTSYTAHPHTLHCSPSHTHAPAHTH 261

Query: 325 GLRPAIARTSTSPHPEQPTLWTAPSSSHVRCKGH-ASEVRRMQSGHWRAPDGLRRV-RLP 152
            L P  + T    H   PT      +SH   + H  + + R  + H         + +L 
Sbjct: 262 MLTPHHSLTHIHSHMIAPT-----HTSHTLARTHLLTHISRYSAPHAHTCSHTSHITQLH 316

Query: 151 ARPAAH--PHTAPAAHSPT 101
            RP +H   HT    HS T
Sbjct: 317 TRPCSHTCAHTPHTIHSRT 335

 Score = 43.5 bits (101), Expect = 0.002
 Identities = 50/183 (27%), Positives = 71/183 (38%), Gaps = 9/183 (4%)
 Frame = -2

Query: 595 STTHVIRSPAVPNTHAANTHTHTHT--HTHMHTH---AWSEVRSRASASHTLSCAHGLSL 431
           S TH   S   P+T A   HTH+H   H H+ TH   A++      +  HT SC+H +  
Sbjct: 94  SHTH---SLTCPHTLAPTRHTHSHACTHPHVQTHTASAYTFTTHSHTPGHTHSCSHLIHT 150

Query: 430 CSLTHASSCVFTFPVASSRTSSTPISPSPTP---THMLGLRPAIARTSTSPHPEQPTLWT 260
            S  H+       P A + T +  + P+  P   +H + L   I R  T  H    T  T
Sbjct: 151 HSHAHSHP-----PNAPTHTHAHTLRPTYCPHTRSHPMHLLTLI-RPLTPAH----THLT 200

Query: 259 APSSSHVRCKGHASEVR-RMQSGHWRAPDGLRRVRLPARPAAHPHTAPAAHSPTSQGTAT 83
             S +HV    H    R    +  +                AHPHT   + S T     T
Sbjct: 201 PGSHTHVHTPAHTPHTRSHNHTCLYLLTHACTNTPAYTSYTAHPHTLHCSPSHTHAPAHT 260

Query: 82  NLL 74
           ++L
Sbjct: 261 HML 263

 Score = 42.0 bits (97), Expect = 0.007
 Identities = 40/167 (23%), Positives = 59/167 (34%), Gaps = 14/167 (8%)
 Frame = -3

Query: 555 HTLQTHTHTHTHTHTCTHMLGRKSAA------VPPHR-------IHCPARMAFPCAL*HM 415
           +T  TH+HT  HTH+C+H++   S A       P H         +CP   + P  L  +
Sbjct: 129 YTFTTHSHTPGHTHSCSHLIHTHSHAHSHPPNAPTHTHAHTLRPTYCPHTRSHPMHLLTL 188

Query: 414 LRPACSLSLWQARALHRHP*VPVPLLRTCSGCGRLLHVPAPAHTLSSPRSGQLRRPLTSG 235
           +RP            H H   P     T S     L++   A T +   +     P T  
Sbjct: 189 IRPLTPAHTHLTPGSHTHVHTPAHTPHTRSHNHTCLYLLTHACTNTPAYTSYTAHPHTLH 248

Query: 234 ARAMHRRC-VGCNRVTGAHLTAYVASGSLPDRLLTHTQHQQPTARLL 97
               H       + +T  H   ++ S  +     THT H      LL
Sbjct: 249 CSPSHTHAPAHTHMLTPHHSLTHIHSHMIAP---THTSHTLARTHLL 292

 Score = 35.0 bits (79), Expect = 0.86
 Identities = 46/194 (23%), Positives = 68/194 (34%), Gaps = 15/194 (7%)
 Frame = -2

Query: 610 LLPDTSTTHVIRSPAVPNTHAANTHTHTHTHTHMHTHAWSEVRSRASASHTLSCAHGLSL 431
           +L   +TTH   S + P+T     +  TH  +H  TH     R   + SHT  C      
Sbjct: 1   MLKHNATTH---SCSHPHTLTRTMYLITHMLSHTCTHNARAHRLTPTCSHTCLCNAPTRQ 57

Query: 430 CSLT------HASSCVFTFPVASSRTSSTPI-SPSPTPTHMLGLRPAIART-------ST 293
            + T      H   C  T  ++ + T  T   S + + TH L     +A T        T
Sbjct: 58  IAPTPTHLHIHTHICPHTLSLSHTPTQCTSSHSHTCSHTHSLTCPHTLAPTRHTHSHACT 117

Query: 292 SPHPEQPTLWTAPSSSHVRCKGHASEVRRMQSGHWRAPDGLRRVRLPARPA-AHPHTAPA 116
            PH +  T      ++H    GH      +   H  A         P  P   H HT   
Sbjct: 118 HPHVQTHTASAYTFTTHSHTPGHTHSCSHLIHTHSHA-----HSHPPNAPTHTHAHTLRP 172

Query: 115 AHSPTSQGTATNLL 74
            + P ++    +LL
Sbjct: 173 TYCPHTRSHPMHLL 186

 Score = 34.3 bits (77), Expect = 1.5
 Identities = 27/90 (30%), Positives = 31/90 (34%), Gaps = 1/90 (1%)
 Frame = -3

Query: 543 THTHTHTHTHTCTHMLGRKSAAVPPHRIHCPARMAFPCAL*HMLRPACSLSLWQARALHR 364
           T TH H HTH C H L             C +  +  C+  H L   C  +L   R  H 
Sbjct: 61  TPTHLHIHTHICPHTLSLSHTPT-----QCTSSHSHTCSHTHSL--TCPHTLAPTRHTHS 113

Query: 363 HP*V-PVPLLRTCSGCGRLLHVPAPAHTLS 277
           H    P     T S      H   P HT S
Sbjct: 114 HACTHPHVQTHTASAYTFTTHSHTPGHTHS 143

 Score = 32.3 bits (72), Expect = 5.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 599 HQHNTCDPLSGGSQYTRCKHTHTHTHTHTHAHTC 498
           H H     LS     T+C  +H+HT +HTH+ TC
Sbjct: 68  HTHICPHTLSLSHTPTQCTSSHSHTCSHTHSLTC 101

>dbj|BAC87264.1| unnamed protein product [Homo sapiens]
          Length = 225

 Score = 50.4 bits (119), Expect = 2e-05
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
 Frame = -2

Query: 541 THTHTHTHTHMHTHAWSEVRSRASASHTLSCAH----GLSLCSLTHASSCVFTFPVASSR 374
           +H HTH HTH HTH  +  R+ ++ +HT + +H     L+L + +HA SC  T  +    
Sbjct: 113 SHMHTHAHTHAHTHGHTHTRAHSTHAHTHAHSHYHTRTLTL-THSHAHSCTLTSTITHMH 171

Query: 373 TSSTPISPSPTPTHMLGLRPAIARTSTSPHPEQPTLWTAPS--SSHVRCK 230
           T         T THM      + RT T  H    T  +  S  + ++ C+
Sbjct: 172 TH--------THTHMHTHTSTLTRTLTLTHTHMHTFLSLVSHLAGYISCQ 213

>dbj|BAC04906.1| unnamed protein product [Homo sapiens]
          Length = 226

 Score = 50.1 bits (118), Expect = 3e-05
 Identities = 35/141 (24%), Positives = 61/141 (42%), Gaps = 30/141 (21%)
 Frame = -2

Query: 595 STTHVIRSPAVPNTHAAN-THTHTHTHTHMHTHAWSEVRSRA-SASHTLSCAHGLSLCSL 422
           + TH+  +  + + H+ + TH H H+HTH+H+H  S + S   + +H L+  H +   ++
Sbjct: 68  TVTHITHTHLLTHIHSHSFTHAHMHSHTHIHSHTHSHIHSNTPTHTHPLTSTH-IQTSTV 126

Query: 421 THASS------------CVFTFPVASSRT--SSTPISPSPTPTHMLGLRPA--------- 311
           TH  S               T P+  + T   + P++ +PT TH   L  +         
Sbjct: 127 THTHSHTHAHKHTYTHTSTHTHPLTFTHTYPITHPLTHTPTHTHTHALTHSHTHIHTHMH 186

Query: 310 -----IARTSTSPHPEQPTLW 263
                +  TST  HP    +W
Sbjct: 187 SHTHPLTHTSTHTHPHTHNVW 207

 Score = 41.2 bits (95), Expect = 0.012
 Identities = 32/95 (33%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
 Frame = -2

Query: 541 THTHTHTHTHMHTHAWSEVRSRASASHTLSCAHGLSLCSLTHASSCVFTFPVASSRT--- 371
           TH HTH HTH+ TH           +H L+  H      LTH  S  FT     S T   
Sbjct: 50  THIHTHPHTHISTH-----------THPLTVTHITHTHLLTHIHSHSFTHAHMHSHTHIH 98

Query: 370 -SSTPISPSPTPTHMLGLRPAIARTSTSPHPEQPT 269
             +     S TPTH   L     +TST  H    T
Sbjct: 99  SHTHSHIHSNTPTHTHPLTSTHIQTSTVTHTHSHT 133

 Score = 38.5 bits (88), Expect = 0.078
 Identities = 45/178 (25%), Positives = 63/178 (35%), Gaps = 11/178 (6%)
 Frame = -2

Query: 580 IRSPAVPNTHA---ANTHTHTHTHTHMHTHAWSEVRSRASASHTLSCAHGLSLCSL---T 419
           +RS     TH    ++TH  T TH H HTH  +        SH LS  + L+L  +    
Sbjct: 4   LRSLLFTATHPHPLSHTHPLTLTHIHSHTHPLTH-------SHPLSHTYPLTLTHIHTHP 56

Query: 418 HASSCVFTFPVASSRTSSTPI-----SPSPTPTHMLGLRPAIARTSTSPHPEQPTLWTAP 254
           H      T P+  +  + T +     S S T  HM       + T +  H   PT     
Sbjct: 57  HTHISTHTHPLTVTHITHTHLLTHIHSHSFTHAHMHSHTHIHSHTHSHIHSNTPTHTHPL 116

Query: 253 SSSHVRCKGHASEVRRMQSGHWRAPDGLRRVRLPARPAAHPHTAPAAHSPTSQGTATN 80
           +S+H++     S V    S                 P    HT P  H  T   T T+
Sbjct: 117 TSTHIQ----TSTVTHTHSHTHAHKHTYTHTSTHTHPLTFTHTYPITHPLTHTPTHTH 170

>dbj|BAC87117.1| unnamed protein product [Homo sapiens]
          Length = 294

 Score = 48.5 bits (114), Expect = 8e-05
 Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
 Frame = -2

Query: 559 NTHAANTHTHTHTHTHMHTHAWSEVRSRASASHTLSCAHGLS---LCSL----THASSCV 401
           +THA N H HT TH H+HTHA           HT +CAH L+    C+L    THA    
Sbjct: 137 HTHAHNAHMHTRTHAHLHTHA-----------HTSTCAHTLAHIHTCTLALMHTHAHIYT 185

Query: 400 FTFPVASSRTSSTPISPSPTPTHM 329
            T  +A + T     + + T THM
Sbjct: 186 CTRTLAHTCTYMHSHAHTCTLTHM 209

 Score = 38.5 bits (88), Expect = 0.078
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -2

Query: 550 AANTHTHTHTHTHMHTHAWSEVRSRASASHTLSCAHGLSLCSLTHASSCVFT 395
           +++     HTH H HTH   + R+  + + TL+CAH        HASS V+T
Sbjct: 85  SSSARASLHTHRHTHTHTNVQTRTHTTHACTLTCAH-------VHASSHVWT 129

 Score = 37.4 bits (85), Expect = 0.17
 Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 25/118 (21%)
 Frame = -2

Query: 547 ANTHTHTHTHTHM-----------------HTHAWSEVRSRASASHTLSCAHGLSLCSLT 419
           A+ HTH HTHTH                  H HA S V +     HT + AH   + + T
Sbjct: 90  ASLHTHRHTHTHTNVQTRTHTTHACTLTCAHVHASSHVWTDVYTDHTHTHAHNAHMHTRT 149

Query: 418 HA--------SSCVFTFPVASSRTSSTPISPSPTPTHMLGLRPAIARTSTSPHPEQPT 269
           HA        S+C  T     +   +  ++   T  H+      +A T T  H    T
Sbjct: 150 HAHLHTHAHTSTCAHTL----AHIHTCTLALMHTHAHIYTCTRTLAHTCTYMHSHAHT 203

>ref|XP_310629.1| ENSANGP00000023115 [Anopheles gambiae] gi|30177896|gb|EAA45095.1|
           ENSANGP00000023115 [Anopheles gambiae str. PEST]
          Length = 83

 Score = 47.0 bits (110), Expect = 2e-04
 Identities = 22/45 (48%), Positives = 28/45 (61%)
 Frame = +2

Query: 437 KAMRAGQCMRCGGTAADFRPSMCVHVCVCVCVCVCVCSVCIGNRR 571
           KAM  G+ +   G       SMC ++CVCVCVCVCVC +C+  RR
Sbjct: 40  KAMNWGRNVGSFGICDTIVTSMCFYLCVCVCVCVCVC-MCVCGRR 83

 Score = 39.3 bits (90), Expect = 0.046
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +2

Query: 404 AGRSMC*RAQGKAMRAGQCMRCGGTAADFRPSMCVHVCVCVCVCVCVC 547
           +GR    +A       G    C          +CV VCVCVCVC+CVC
Sbjct: 33  SGRERAHKAMNWGRNVGSFGICDTIVTSMCFYLCVCVCVCVCVCMCVC 80



EST assemble image


clone accession position
1 CM064h05_r AV390983 1 627
2 LC017h01_r AV620120 85 614
3 LC017h07_r AV620124 91 586




Chlamydomonas reinhardtii
Kazusa DNA Research Institute