Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001572A_C01 KCC001572A_c01
(540 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP73851.1| putative RNA binding protein [Oryza sativa (japon... 172 3e-42
gb|AAH57709.1| Unknown (protein for MGC:68842) [Xenopus laevis] 171 6e-42
ref|NP_057131.1| pre-mRNA branch site protein p14; CGI-110 prote... 168 5e-41
ref|NP_196780.1| RNA recognition motif (RRM)-containing protein ... 161 4e-39
ref|XP_312143.1| ENSANGP00000022192 [Anopheles gambiae] gi|21295... 155 3e-37
>gb|AAP73851.1| putative RNA binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 130
Score = 172 bits (436), Expect = 3e-42
Identities = 81/116 (69%), Positives = 96/116 (81%)
Frame = +2
Query: 191 MAAAAQRARNQRLPPEVNRALFVRNLPFNISSDEMYDIFGKYGPIRQIRIGTTKEARGTA 370
MAA + R N RLPPEVNR L+VRNLPFNISS+EMYDIFGKYG IRQIR+G K+ RGTA
Sbjct: 1 MAAVSLRKSNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRLGNAKDTRGTA 60
Query: 371 YVVYEDIYDAKTACDHLSGFNVANRYLIVLYFNPVRHNKKVSTKEQEEQLQKMQNK 538
+VVYEDIYDAK A DHLSGFNVANRYLIVLY+ P + +KK K++EE++ ++Q K
Sbjct: 61 FVVYEDIYDAKNAVDHLSGFNVANRYLIVLYYQPAKMSKKSDVKKKEEEITRLQEK 116
>gb|AAH57709.1| Unknown (protein for MGC:68842) [Xenopus laevis]
Length = 125
Score = 171 bits (433), Expect = 6e-42
Identities = 79/116 (68%), Positives = 97/116 (83%)
Frame = +2
Query: 191 MAAAAQRARNQRLPPEVNRALFVRNLPFNISSDEMYDIFGKYGPIRQIRIGTTKEARGTA 370
MA A + N RLPPEVNR L++RNLP+ I+ +EMYDIFGKYGPIRQIR+G T E+RGTA
Sbjct: 1 MAMQAAKRANIRLPPEVNRILYIRNLPYKITGEEMYDIFGKYGPIRQIRVGNTPESRGTA 60
Query: 371 YVVYEDIYDAKTACDHLSGFNVANRYLIVLYFNPVRHNKKVSTKEQEEQLQKMQNK 538
YVVYEDI+DAK ACDHLSGFNV NRYL+VLY+NP R +K+ TK++EEQL+ ++ K
Sbjct: 61 YVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNPNRAFQKMDTKKKEEQLKLLKEK 116
>ref|NP_057131.1| pre-mRNA branch site protein p14; CGI-110 protein; splicing factor
3B, 14 kDa subunit [Homo sapiens]
gi|13384692|ref|NP_079599.1| RIKEN cDNA 0610009D07 [Mus
musculus] gi|12585536|sp|Q9Y3B4|PM14_HUMAN Pre-mRNA
branch site protein p14 (CGI-110) (HSPC175) (Ht006)
gi|31563064|sp|P59708|PM14_MOUSE Pre-mRNA branch site
protein p14 gi|4929689|gb|AAD34105.1|AF151868_1 CGI-110
protein [Homo sapiens]
gi|6841570|gb|AAF29138.1|AF161523_1 HSPC175 [Homo
sapiens] gi|9963797|gb|AAG09698.1|AF184213_1 ht006
protein [Homo sapiens] gi|12832311|dbj|BAB22052.1|
unnamed protein product [Mus musculus]
gi|12834501|dbj|BAB22936.1| unnamed protein product [Mus
musculus] gi|15278118|gb|AAK94041.1|AF401310_1 pre-mRNA
branch site protein p14 [Homo sapiens]
gi|15930037|gb|AAH15463.1| Pre-mRNA branch site protein
p14 [Homo sapiens] gi|18044537|gb|AAH19535.1| RIKEN cDNA
0610009D07 [Mus musculus]
Length = 125
Score = 168 bits (425), Expect = 5e-41
Identities = 78/116 (67%), Positives = 96/116 (82%)
Frame = +2
Query: 191 MAAAAQRARNQRLPPEVNRALFVRNLPFNISSDEMYDIFGKYGPIRQIRIGTTKEARGTA 370
MA A + N RLPPEVNR L++RNLP+ I+++EMYDIFGKYGPIRQIR+G T E RGTA
Sbjct: 1 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTA 60
Query: 371 YVVYEDIYDAKTACDHLSGFNVANRYLIVLYFNPVRHNKKVSTKEQEEQLQKMQNK 538
YVVYEDI+DAK ACDHLSGFNV NRYL+VLY+N R +K+ TK++EEQL+ ++ K
Sbjct: 61 YVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEK 116
>ref|NP_196780.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana] gi|32129916|sp|Q9FMP4|PM14_ARATH Pre-mRNA
branch site p14-like protein gi|9759386|dbj|BAB10037.1|
contains similarity to RNA-binding
protein~gene_id:MXC9.15 [Arabidopsis thaliana]
gi|21617984|gb|AAM67034.1| unknown [Arabidopsis
thaliana] gi|27754399|gb|AAO22648.1| putative
RRM-containing protein [Arabidopsis thaliana]
gi|28394033|gb|AAO42424.1| putative RRM-containing
protein [Arabidopsis thaliana]
Length = 124
Score = 161 bits (408), Expect = 4e-39
Identities = 77/116 (66%), Positives = 91/116 (78%)
Frame = +2
Query: 191 MAAAAQRARNQRLPPEVNRALFVRNLPFNISSDEMYDIFGKYGPIRQIRIGTTKEARGTA 370
M + R N RLPPEVNR L+VRNLPFNI+S+EMYDIFGKYG IRQIRIG K +GTA
Sbjct: 1 MTTISLRKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTA 60
Query: 371 YVVYEDIYDAKTACDHLSGFNVANRYLIVLYFNPVRHNKKVSTKEQEEQLQKMQNK 538
+VVYEDIYDAK A DHLSGFNVANRYLIVLY+ + +KK K+ E+++ K+Q K
Sbjct: 61 FVVYEDIYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEK 116
>ref|XP_312143.1| ENSANGP00000022192 [Anopheles gambiae] gi|21295636|gb|EAA07781.1|
ENSANGP00000022192 [Anopheles gambiae str. PEST]
Length = 141
Score = 155 bits (392), Expect = 3e-37
Identities = 72/116 (62%), Positives = 92/116 (79%)
Frame = +2
Query: 191 MAAAAQRARNQRLPPEVNRALFVRNLPFNISSDEMYDIFGKYGPIRQIRIGTTKEARGTA 370
MA + Q+ N RLPPEVNR L+VRNLP+ I+SDEMYDIFGKYG IRQIR+G T E RGTA
Sbjct: 16 MALSMQKRNNVRLPPEVNRVLYVRNLPYKITSDEMYDIFGKYGAIRQIRVGNTPETRGTA 75
Query: 371 YVVYEDIYDAKTACDHLSGFNVANRYLIVLYFNPVRHNKKVSTKEQEEQLQKMQNK 538
+VVYEDI+DAK A DHLSGFNV NRYL+VLY+ + K++ +++++L +M+ K
Sbjct: 76 FVVYEDIFDAKNARDHLSGFNVCNRYLVVLYYQSTKAFKQLDVDKKQDELDQMKAK 131
