KCC001560A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001560A_C01 KCC001560A_c01
GCGACCTGACGCCCTCGGTCGGCACCGTGACGCGCCACCCCCACCTGTCCATCGGCCGCT
ACCACCAGCACTCGGTGGACCAGCTGGACGAGGAGAAGACTGTGCTGGAGTTCTTCAAGT
CCATGTACCCCAACACACCCACCTTCAAGCGCGAGGAGGACGAGTGGCGTGGCTACGTGG
GCCGCTTCGGCATCAGCGGCCGCCTGCAGACCACCAAGATCGGCATGCTGTCGGAGGGCC
AGAAGTCGCGACTGGTGTTCGCCATGATGTGCATGAAGAACAAGCAACCTGCTGCTGCTG
GACGAGCCCACCAACCATCTGGACATTGAGGCCATTGACTCGCTGGCCGACGCCATCAAG
CGCTACGACGGAGGAATGGTGCTGGTCAGTCACGACTTCCGCCTCATCGACCAGGTGGCC
AAGGAGATCTGGGTGTGCGAGGACAAGAAGGTGACGATGTGGAAGGGCGACATTCGCGAC
TATAAGGCGCTGCTGGCCAAGAAGATGGGCCTCAGCGGCGTGCCCGGCAAGAAGTAAACT
GCAGCCCCCCGGCAACATATCGGCAACAGCTCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001560A_C01 KCC001560A_c01
         (573 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC55994.1| putative ABC transporter [Oryza sativa (japonica...   116  3e-42
gb|AAL87692.1|AF479254_1 non-transporter ABC protein AbcF2 [Dict...   107  5e-42
ref|XP_331312.1| hypothetical protein [Neurospora crassa] gi|289...   103  8e-42
ref|NP_200887.1| ABC transporter family protein [Arabidopsis tha...   114  5e-41
ref|NP_573057.1| CG9281-PB [Drosophila melanogaster] gi|24642252...   112  5e-40

>dbj|BAC55994.1| putative ABC transporter [Oryza sativa (japonica cultivar-group)]
          Length = 592

 Score =  116 bits (291), Expect(2) = 3e-42
 Identities = 55/80 (68%), Positives = 65/80 (80%)
 Frame = +1

Query: 277 RTSNLLLLDEPTNHLDIEAIDSLADAIKRYDGGMVLVSHDFRLIDQVAKEIWVCEDKKVT 456
           R   LLLLDEPTNHLDIE IDSLA+A+  +DGG+VLVSHDFRLI+QVA+EIWVCE + VT
Sbjct: 512 RQPQLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAQEIWVCEKQAVT 571

Query: 457 MWKGDIRDYKALLAKKMGLS 516
            W+GDI D+K  L  + GLS
Sbjct: 572 RWEGDIMDFKEHLRSRAGLS 591

 Score = 77.4 bits (189), Expect(2) = 3e-42
 Identities = 37/95 (38%), Positives = 56/95 (58%)
 Frame = +3

Query: 3   DLTPSVGTVTRHPHLSIGRYHQHSVDQLDEEKTVLEFFKSMYPNTPTFKREEDEWRGYVG 182
           DL P  G V RH HL I +YHQH  ++LD +   L++    YP       EE++ R  +G
Sbjct: 426 DLAPLDGMVRRHNHLRIAQYHQHLAEKLDLDMPALQYMMREYPGN-----EEEKMRAAIG 480

Query: 183 RFGISGRLQTTKIGMLSEGQKSRLVFAMMCMKNKQ 287
           +FG+SG+ Q   +  LS+GQ+SR++FA +  +  Q
Sbjct: 481 KFGLSGKAQVMPMRNLSDGQRSRVIFAWLAYRQPQ 515

 Score = 53.5 bits (127), Expect = 2e-06
 Identities = 25/65 (38%), Positives = 41/65 (62%)
 Frame = +1

Query: 289 LLLLDEPTNHLDIEAIDSLADAIKRYDGGMVLVSHDFRLIDQVAKEIWVCEDKKVTMWKG 468
           +LLLDEPTNHLD+EA   L + +K++D  +V++SH    ++ V   I   + KK+ ++ G
Sbjct: 230 ILLLDEPTNHLDLEACVWLEETLKKFDRILVVISHSQDFLNGVCTNIIHMQSKKLKLYSG 289

Query: 469 DIRDY 483
           +   Y
Sbjct: 290 NYDQY 294

>gb|AAL87692.1|AF479254_1 non-transporter ABC protein AbcF2 [Dictyostelium discoideum]
          Length = 593

 Score =  107 bits (267), Expect(2) = 5e-42
 Identities = 51/74 (68%), Positives = 59/74 (78%)
 Frame = +1

Query: 286 NLLLLDEPTNHLDIEAIDSLADAIKRYDGGMVLVSHDFRLIDQVAKEIWVCEDKKVTMWK 465
           +LLLLDEPTNHLD+E IDSLA AI  + GGM+LVSHDFRLI QVAKEIWVC++K +T W 
Sbjct: 506 HLLLLDEPTNHLDMECIDSLALAINSFPGGMILVSHDFRLISQVAKEIWVCDNKTITKWA 565

Query: 466 GDIRDYKALLAKKM 507
           GDI  YK  L  +M
Sbjct: 566 GDITSYKNHLKAQM 579

 Score = 85.9 bits (211), Expect(2) = 5e-42
 Identities = 37/92 (40%), Positives = 62/92 (67%)
 Frame = +3

Query: 6   LTPSVGTVTRHPHLSIGRYHQHSVDQLDEEKTVLEFFKSMYPNTPTFKREEDEWRGYVGR 185
           ++P+ G + +H HL + RYHQH+ + LD   T L+F +S + +     ++ +EWR  +GR
Sbjct: 416 ISPTQGFIKKHSHLKMARYHQHAHEVLDLTATPLDFVRSKFAH---MNKDTEEWRREIGR 472

Query: 186 FGISGRLQTTKIGMLSEGQKSRLVFAMMCMKN 281
           FG++G+ QT  IG +S+G KSRL+F +M ++N
Sbjct: 473 FGVTGKAQTEAIGCMSDGIKSRLIFCLMALEN 504

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 23/65 (35%), Positives = 36/65 (55%)
 Frame = +1

Query: 289 LLLLDEPTNHLDIEAIDSLADAIKRYDGGMVLVSHDFRLIDQVAKEIWVCEDKKVTMWKG 468
           LLLLDEPTNHLD+ A   L D +  YD  ++++SH    ++ V   I      K+  + G
Sbjct: 218 LLLLDEPTNHLDLGACVWLEDYLANYDRSLIIISHSQDFLNAVCTNIIHMTQSKLKYYGG 277

Query: 469 DIRDY 483
           +  ++
Sbjct: 278 NYDNF 282

>ref|XP_331312.1| hypothetical protein [Neurospora crassa] gi|28920069|gb|EAA29453.1|
           hypothetical protein [Neurospora crassa]
           gi|28950291|emb|CAD70745.1| probable iron inhibited ABC
           transporter 2 [Neurospora crassa]
          Length = 613

 Score =  103 bits (256), Expect(2) = 8e-42
 Identities = 48/78 (61%), Positives = 61/78 (77%)
 Frame = +1

Query: 286 NLLLLDEPTNHLDIEAIDSLADAIKRYDGGMVLVSHDFRLIDQVAKEIWVCEDKKVTMWK 465
           N+LLLDEPTN LDI  IDSLADAI  + GG+++VSHDFRL+D++AK+I VCE+K +  W+
Sbjct: 534 NMLLLDEPTNGLDIPTIDSLADAINAFTGGVIVVSHDFRLLDKIAKQILVCENKTIKQWE 593

Query: 466 GDIRDYKALLAKKMGLSG 519
           G I DYK  L KKM  +G
Sbjct: 594 GSISDYKNYLRKKMISAG 611

 Score = 89.4 bits (220), Expect(2) = 8e-42
 Identities = 41/92 (44%), Positives = 63/92 (67%)
 Frame = +3

Query: 6   LTPSVGTVTRHPHLSIGRYHQHSVDQLDEEKTVLEFFKSMYPNTPTFKREEDEWRGYVGR 185
           L+P+ G V RH HL +G Y QHS +QLD  K+ L+F +  YP+     ++   WR  +G+
Sbjct: 444 LSPTDGVVQRHTHLKLGLYSQHSAEQLDLTKSALDFVRDKYPDK---SQDYQYWRQQLGK 500

Query: 186 FGISGRLQTTKIGMLSEGQKSRLVFAMMCMKN 281
           +G+SG  QT+ IG LS+GQKSR+VFA++ +++
Sbjct: 501 YGLSGEAQTSLIGTLSDGQKSRIVFALLAIES 532

 Score = 42.4 bits (98), Expect = 0.005
 Identities = 20/35 (57%), Positives = 27/35 (77%)
 Frame = +1

Query: 289 LLLLDEPTNHLDIEAIDSLADAIKRYDGGMVLVSH 393
           LLLLD+PT HLD+EA   L + +K++D  +VLVSH
Sbjct: 246 LLLLDDPTAHLDLEACVWLEEYLKKWDRTLVLVSH 280

>ref|NP_200887.1| ABC transporter family protein [Arabidopsis thaliana]
           gi|10176907|dbj|BAB10100.1| ABC transporter [Arabidopsis
           thaliana] gi|22655234|gb|AAM98207.1| ABC transporter
           homolog PnATH-like protein [Arabidopsis thaliana]
           gi|24030366|gb|AAN41346.1| putative ABC transporter
           homolog PnATH [Arabidopsis thaliana]
           gi|30725400|gb|AAP37722.1| At5g60790 [Arabidopsis
           thaliana]
          Length = 595

 Score =  114 bits (284), Expect(2) = 5e-41
 Identities = 53/76 (69%), Positives = 62/76 (80%)
 Frame = +1

Query: 286 NLLLLDEPTNHLDIEAIDSLADAIKRYDGGMVLVSHDFRLIDQVAKEIWVCEDKKVTMWK 465
           N+LLLDEPTNHLDIE IDSLA+A+  +DGG+VLVSHDFRLI+QVA EIWVCE + +T W 
Sbjct: 518 NMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCEKQCITKWN 577

Query: 466 GDIRDYKALLAKKMGL 513
           GDI D+K  L  K GL
Sbjct: 578 GDIMDFKRHLKAKAGL 593

 Score = 75.9 bits (185), Expect(2) = 5e-41
 Identities = 37/92 (40%), Positives = 56/92 (60%)
 Frame = +3

Query: 3   DLTPSVGTVTRHPHLSIGRYHQHSVDQLDEEKTVLEFFKSMYPNTPTFKREEDEWRGYVG 182
           +L P+ G V RH HL I +YHQH  ++LD E   L +    +P T     EE++ R  +G
Sbjct: 429 ELHPTEGMVRRHNHLKIAQYHQHLAEKLDLELPALLYMMREFPGT-----EEEKMRAAIG 483

Query: 183 RFGISGRLQTTKIGMLSEGQKSRLVFAMMCMK 278
           RFG++G+ Q   +  LS+GQ+SR++FA +  K
Sbjct: 484 RFGLTGKAQVMPMKNLSDGQRSRVIFAWLAYK 515

 Score = 50.8 bits (120), Expect = 1e-05
 Identities = 25/65 (38%), Positives = 40/65 (61%)
 Frame = +1

Query: 289 LLLLDEPTNHLDIEAIDSLADAIKRYDGGMVLVSHDFRLIDQVAKEIWVCEDKKVTMWKG 468
           +LLLDEPTNHLD+EA   L +++K +D  +V+VSH    ++ V   I   + K++  + G
Sbjct: 233 ILLLDEPTNHLDLEACVWLEESLKNFDRILVVVSHSQDFLNGVCTNIIHMQSKQLKYYTG 292

Query: 469 DIRDY 483
           +   Y
Sbjct: 293 NFDQY 297

>ref|NP_573057.1| CG9281-PB [Drosophila melanogaster] gi|24642252|ref|NP_727881.1|
           CG9281-PC [Drosophila melanogaster]
           gi|7293109|gb|AAF48493.1| CG9281-PB [Drosophila
           melanogaster] gi|16768776|gb|AAL28607.1| LD02975p
           [Drosophila melanogaster] gi|22832283|gb|AAN09361.1|
           CG9281-PC [Drosophila melanogaster]
          Length = 611

 Score =  112 bits (281), Expect(2) = 5e-40
 Identities = 54/74 (72%), Positives = 62/74 (82%)
 Frame = +1

Query: 286 NLLLLDEPTNHLDIEAIDSLADAIKRYDGGMVLVSHDFRLIDQVAKEIWVCEDKKVTMWK 465
           +LLLLDEPTNHLD+E ID+LADAI  +DGGMVLVSHDFRLI+QVA+EIWVCE + VT WK
Sbjct: 526 HLLLLDEPTNHLDMETIDALADAINDFDGGMVLVSHDFRLINQVAEEIWVCEKETVTKWK 585

Query: 466 GDIRDYKALLAKKM 507
           G I DYK  L  K+
Sbjct: 586 GGILDYKDHLKNKI 599

 Score = 73.6 bits (179), Expect(2) = 5e-40
 Identities = 35/89 (39%), Positives = 56/89 (62%)
 Frame = +3

Query: 3   DLTPSVGTVTRHPHLSIGRYHQHSVDQLDEEKTVLEFFKSMYPNTPTFKREEDEWRGYVG 182
           DL P+ G + ++ HL I RYHQH  + LD + + LE+    +P+     +E++E R  +G
Sbjct: 436 DLVPTSGMIRKNSHLRIARYHQHLHELLDLDASPLEYMMRAFPDV----KEKEEMRKIIG 491

Query: 183 RFGISGRLQTTKIGMLSEGQKSRLVFAMM 269
           R+G++GR Q   I  LS+GQ+ R+VFA +
Sbjct: 492 RYGLTGRQQVCPIRQLSDGQRCRVVFAWL 520

 Score = 48.5 bits (114), Expect = 6e-05
 Identities = 28/76 (36%), Positives = 44/76 (57%)
 Frame = +1

Query: 286 NLLLLDEPTNHLDIEAIDSLADAIKRYDGGMVLVSHDFRLIDQVAKEIWVCEDKKVTMWK 465
           +LLLLDEPTNHLD++A   L + +K Y   +VL+SH    ++ V   I     K++  + 
Sbjct: 238 HLLLLDEPTNHLDLDACVWLEEELKTYKRILVLISHSQDFLNGVCTNIIHLTGKRLKYYT 297

Query: 466 GDIRDYKALLAKKMGL 513
           G   +Y+A +  +M L
Sbjct: 298 G---NYEAFVRTRMEL 310



EST assemble image


clone accession position
1 MX067h06_r BP088750 1 458
2 MX229h01_r BP090838 17 303
3 HC076b04_r AV637677 222 689
4 CM062g04_r AV390173 228 646




Chlamydomonas reinhardtii
Kazusa DNA Research Institute