KCC001536A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001536A_C01 KCC001536A_c01
GTCGGGTCCTGTTGTGTCCCACATCTTGCATCGTTCTCACCCCTCCCGTTTTCATTTTCT
CCTCAAATCACCATGGGTGTCGACGTCGCGACTACTCGCCCTGGCGATGGCGTGAGCTTC
CCCAAGACTGGCCAGACCGTGTTTGTGCACTACACGGGCACCCTGACCGACGGCAAGAAG
TTCGACAGCTCCCGCGACCGTGGCGAGCCCTTCTCTTTCCGCCTGGGCATGGGCGAGGTG
ATCAAGGGCTGGGATGAGGGCGTGGCCCAGATGTCCAAGGGCCAGCGCGCCACCCTGACC
ATCAGCCACGACTTCGCCTATGGCCCCCGCGGCATCCCCGGCGTGATCCCTCCCTCGGCT
ACCCTGGTGTTCGATGTTGAGCTGCTGGACTACAAGTAAAGCATTTGGCTTTCGATGTCC
TCCCCCGAGTTGCAAGAACGAGAGGATTTTGCAAGGCAGGAGGGAGCCGTGGAGCAACTG
CCAAGTTGCATGCCTGAGGCGCAGCCGCCATGGAGCGGATTACAGCGGTGGCGGTGAATG
GCGGGCGGCAAACAGGAGGGCTGGAAATAAATAAGGTGTCACGTGCCTTGGTGCGCGCGG
GGTGCTCATGTTGTTGGTGAAGTTGTCGAGGTCGAATCAGACAGCTGCAAAAGCTCGCGT
GTTCTTGATTTGATGGTAGTGTAACTTTCAAGCGGCTGGCCCTGTTGCACTGCGAAGGAC
GGCCTGGGGACACCTGAGGGATGCATGCAGACGCTGCTAAAGCACACCGTGTGGGTGTTC
GGGCTTGCGCCTGTGCTTTTGGTTGCATCTCTGGCTGTTATCCTCTTCGTTTATTTCTCC
TTGGTTTTGCTGGCTTGATGTTGCGTTGACGTCATGCGTGGTGCCGTGTGGGCACCGCGA
GTCGGTGGTGCGTGCGATCCGCGTTGGTGGAAATCAGCGTTTGTGGACGGTGGCCTCTTG
TGATGAGAGCGACACCCTGTAAATAGTTTCGTGTACAc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001536A_C01 KCC001536A_c01
         (998 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAC38784.1| putative FK506-binding protein [Suberites domunc...   169  5e-41
gb|AAF16717.1|AF117595_1 FK506-binding protein [Manduca sexta]        160  4e-38
ref|NP_000792.1| FK506-binding protein 1A; FK506-binding protein...   157  4e-37
gb|AAP36774.1| Homo sapiens FK506 binding protein 1A, 12kDa [syn...   157  4e-37
sp|P18203|FKB1_BOVIN FK506-binding protein 1A (Peptidyl-prolyl c...   156  5e-37

>emb|CAC38784.1| putative FK506-binding protein [Suberites domuncula]
          Length = 108

 Score =  169 bits (429), Expect = 5e-41
 Identities = 78/105 (74%), Positives = 91/105 (86%)
 Frame = +1

Query: 73  MGVDVATTRPGDGVSFPKTGQTVFVHYTGTLTDGKKFDSSRDRGEPFSFRLGMGEVIKGW 252
           MGVD+    PGDG +FPKTGQTV VHYTGTLT+GKKFDSSRDRG+PF F++G G+VI+GW
Sbjct: 1   MGVDIEEITPGDGTTFPKTGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFKIGKGQVIRGW 60

Query: 253 DEGVAQMSKGQRATLTISHDFAYGPRGIPGVIPPSATLVFDVELL 387
           DEGVA+MS GQRA LT S D+AYG +G PGVIPP+ATL+FDVELL
Sbjct: 61  DEGVAKMSVGQRAKLTCSSDYAYGEKGHPGVIPPNATLIFDVELL 105

>gb|AAF16717.1|AF117595_1 FK506-binding protein [Manduca sexta]
          Length = 108

 Score =  160 bits (404), Expect = 4e-38
 Identities = 75/105 (71%), Positives = 88/105 (83%)
 Frame = +1

Query: 73  MGVDVATTRPGDGVSFPKTGQTVFVHYTGTLTDGKKFDSSRDRGEPFSFRLGMGEVIKGW 252
           MGV V T  PGD  ++PK GQTV VHYTGTLT GKKFDSSRDRG+PF FR+G GEVI+GW
Sbjct: 1   MGVTVDTITPGDESTYPKNGQTVVVHYTGTLTSGKKFDSSRDRGKPFKFRIGKGEVIRGW 60

Query: 253 DEGVAQMSKGQRATLTISHDFAYGPRGIPGVIPPSATLVFDVELL 387
           DEGVA+MS G+RA LT + D+AYG +G PGVIPP++TL+FDVELL
Sbjct: 61  DEGVAKMSVGERAKLTCTPDYAYGQQGHPGVIPPNSTLIFDVELL 105

>ref|NP_000792.1| FK506-binding protein 1A; FK506-binding protein 1; FK506-binding
           protein 1A (12kD); FK506-binding protein, T-cell, 12-kD;
           protein kinase C inhibitor 2; peptidyl-prolyl cis-trans
           isomerase; rotamase; immunophilin FKBP12; FK506 binding
           protein 1A (12kD) [Homo sapiens]
           gi|17149836|ref|NP_463460.1| FK506-binding protein 1A;
           FK506-binding protein 1; FK506-binding protein 1A
           (12kD); FK506-binding protein, T-cell, 12-kD; protein
           kinase C inhibitor 2; peptidyl-prolyl cis-trans
           isomerase; rotamase; immunophilin FKBP12; FK506 binding
           protein 1A (12kD) [Homo sapiens]
           gi|120222|sp|P20071|FKB1_HUMAN FK506-binding protein 1A
           (Peptidyl-prolyl cis-trans isomerase) (PPIase)
           (Rotamase) (12 kDa FKBP) (FKBP-12) (Immunophilin FKBP12)
           gi|107276|pir||A35780 peptidylprolyl isomerase (EC
           5.2.1.8) FKBP1 - human gi|539777|pir||A42657
           FK506-binding protein - rabbit gi|165023|gb|AAA31252.1|
           binding protein gi|182628|gb|AAA35844.1| FK506-binding
           protein (FKBP) gi|182633|gb|AAA58472.1| FKBP-12 protein
           gi|182649|gb|AAA58476.1| FK506-binding protein 12 [Homo
           sapiens] gi|288196|emb|CAA39272.1| FKBP [Homo sapiens]
           gi|665650|emb|CAA36462.1| FK-506 binding protein [Homo
           sapiens] gi|13477343|gb|AAH05147.1| FK506-binding
           protein 1A [Homo sapiens] gi|30582971|gb|AAP35729.1|
           FK506 binding protein 1A, 12kDa [Homo sapiens]
           gi|227077|prf||1613455A FK506 binding protein FKBP
          Length = 108

 Score =  157 bits (396), Expect = 4e-37
 Identities = 77/105 (73%), Positives = 83/105 (78%)
 Frame = +1

Query: 73  MGVDVATTRPGDGVSFPKTGQTVFVHYTGTLTDGKKFDSSRDRGEPFSFRLGMGEVIKGW 252
           MGV V T  PGDG +FPK GQT  VHYTG L DGKKFDSSRDR +PF F LG  EVI+GW
Sbjct: 1   MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW 60

Query: 253 DEGVAQMSKGQRATLTISHDFAYGPRGIPGVIPPSATLVFDVELL 387
           +EGVAQMS GQRA LTIS D+AYG  G PG+IPP ATLVFDVELL
Sbjct: 61  EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELL 105

>gb|AAP36774.1| Homo sapiens FK506 binding protein 1A, 12kDa [synthetic construct]
          Length = 109

 Score =  157 bits (396), Expect = 4e-37
 Identities = 77/105 (73%), Positives = 83/105 (78%)
 Frame = +1

Query: 73  MGVDVATTRPGDGVSFPKTGQTVFVHYTGTLTDGKKFDSSRDRGEPFSFRLGMGEVIKGW 252
           MGV V T  PGDG +FPK GQT  VHYTG L DGKKFDSSRDR +PF F LG  EVI+GW
Sbjct: 1   MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW 60

Query: 253 DEGVAQMSKGQRATLTISHDFAYGPRGIPGVIPPSATLVFDVELL 387
           +EGVAQMS GQRA LTIS D+AYG  G PG+IPP ATLVFDVELL
Sbjct: 61  EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELL 105

>sp|P18203|FKB1_BOVIN FK506-binding protein 1A (Peptidyl-prolyl cis-trans isomerase)
           (PPiase) (Rotamase) (12 kDa FKBP) (FKBP-12)
           (Immunophilin FKBP12)
          Length = 108

 Score =  156 bits (395), Expect = 5e-37
 Identities = 76/105 (72%), Positives = 84/105 (79%)
 Frame = +1

Query: 73  MGVDVATTRPGDGVSFPKTGQTVFVHYTGTLTDGKKFDSSRDRGEPFSFRLGMGEVIKGW 252
           MGV V T  PGDG +FPK GQT  VHYTG L DGKKFDSSRDR +PF F LG  EVI+GW
Sbjct: 1   MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGW 60

Query: 253 DEGVAQMSKGQRATLTISHDFAYGPRGIPGVIPPSATLVFDVELL 387
           +EGVAQMS GQRA LTIS D+AYG  G PG+IPP+ATL+FDVELL
Sbjct: 61  EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPNATLIFDVELL 105



EST assemble image


clone accession position
1 LC006f03_r AV619321 1 660
2 MX021g06_r BP086971 8 388
3 LC019a11_r AV620210 21 654
4 LC010c09_r AV619579 63 447
5 MX204b09_r BP089270 83 571
6 LC091e05_r AV625363 83 563
7 LC012g05_r AV619760 87 636
8 CM060b06_r AV390798 89 400
9 LC056b01_r AV622886 92 626
10 LC044f11_r AV622073 92 599
11 HC011g04_r AV632716 93 543
12 HC076d08_r AV637701 96 551
13 MX029c01_r BP087256 97 563
14 LCL071f11_r AV630034 101 402
15 HC006a09_r AV632268 104 510
16 HC014e12_r AV632936 106 589
17 MX257f11_r BP092681 107 641
18 LC023f12_r AV620560 107 546
19 MX249h03_r BP092107 107 638
20 LC004b08_r AV619128 107 644
21 LC053f08_r AV622727 110 616
22 MX068b01_r BP088756 113 443
23 MX060g11_r BP088452 113 595
24 CM063f06_r AV390059 157 748
25 HC017c08_r AV633144 174 669
26 LC015f02_r AV619962 248 523
27 HC049g04_r AV635701 603 1095
28 LC022g06_r AV620483 649 1131




Chlamydomonas reinhardtii
Kazusa DNA Research Institute