Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001530A_C01 KCC001530A_c01
(531 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_213238.2| similar to ABC-C transporter [Rattus norvegicus] 33 2.3
ref|ZP_00120101.1| COG0553: Superfamily II DNA/RNA helicases, SN... 33 2.3
ref|NP_645581.1| fibrinogen-binding protein [Staphylococcus aure... 33 2.3
sp|O00411|RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial ... 33 3.0
gb|AAC06147.1| RPOM_HUMAN [Homo sapiens] 33 3.0
>ref|XP_213238.2| similar to ABC-C transporter [Rattus norvegicus]
Length = 1846
Score = 33.1 bits (74), Expect = 2.3
Identities = 15/27 (55%), Positives = 16/27 (58%)
Frame = -1
Query: 429 GTHIGPRAPQGPHTRATPGI*RQPAWP 349
GTH PR PQ H R GI R+PA P
Sbjct: 88 GTHPAPRTPQQQHLRQHEGIVREPAGP 114
>ref|ZP_00120101.1| COG0553: Superfamily II DNA/RNA helicases, SNF2 family [Cytophaga
hutchinsonii]
Length = 1407
Score = 33.1 bits (74), Expect = 2.3
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = -1
Query: 207 SIHVAYDVFVTGTTKYVLSYQLSLPSCATMRSINQRVLLSQ 85
+IH +++FV T+YV++Y+ + T++S N R+LL +
Sbjct: 794 NIHTFFELFVLERTEYVVNYKEEIVPKDTVKSFNNRMLLQK 834
>ref|NP_645581.1| fibrinogen-binding protein [Staphylococcus aureus subsp. aureus
MW2] gi|21203930|dbj|BAB94629.1| fibrinogen-binding
protein [Staphylococcus aureus subsp. aureus MW2]
Length = 946
Score = 33.1 bits (74), Expect = 2.3
Identities = 22/74 (29%), Positives = 37/74 (49%)
Frame = -2
Query: 437 IYGEPTSGPGHRRARTPGPHRASDANRHGLH*LNQQAHSTLSNDVHYGSRACSTHDRVTV 258
+ GE T+ +A TP ++S+ N L +NQ ++ T SND + S S +
Sbjct: 113 VTGEATTATN--QANTPATTQSSNTNAEEL--VNQTSNETTSNDTNTVSSVNSPQNSTNA 168
Query: 257 QNIYDTRTQSTMAS 216
+N+ T+ ST A+
Sbjct: 169 ENVSTTQDTSTEAT 182
>sp|O00411|RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial precursor (MTRPOL)
gi|2114396|gb|AAB58255.1| mitochondrial RNA polymerase
[Homo sapiens]
Length = 1230
Score = 32.7 bits (73), Expect = 3.0
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 342 SMQAMPVGVRCPVWPWCAGPAVPGARCGFPINIARSVSVASMREENLNKHPPLGVHG 512
+ +A+ V + CP PW + + GA P + R+V A+ +E L PP +HG
Sbjct: 640 TFEAVDVPMLCPPLPWTSPHS--GAFLLSPTKLMRTVEGATQHQELLETCPPTALHG 694
>gb|AAC06147.1| RPOM_HUMAN [Homo sapiens]
Length = 1230
Score = 32.7 bits (73), Expect = 3.0
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 342 SMQAMPVGVRCPVWPWCAGPAVPGARCGFPINIARSVSVASMREENLNKHPPLGVHG 512
+ +A+ V + CP PW + + GA P + R+V A+ +E L PP +HG
Sbjct: 640 TFEAVDVPMLCPPLPWTSPHS--GAFLLSPTKLMRTVEGATQHQELLETCPPTALHG 694
