KCC001480A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001480A_C01 KCC001480A_c01
gcaccagctcggttttttttttttttttttacctggccgtcttacattggtcgttttagg
tcgtttgccgcgcaacgtgtGTGCCCCTTCGACACGCCAATTCACACCCGAGCTGCGTCG
GCATCACCCACATCCCGAGCCGGATGGCAAGCTGACTGACTATGCGGCCGTCCGCAAGCC
ACGAAAGCCCGTTCCGCTCCACACAGACACACATCCCTGACACATCCCTTCCAAGCGCCA
TGTGCCGAGCAGGCGCACACGAAAGCCTTCCCTGTTTTGCGGGACTGGGACTGGCACCGC
CAGCACATGTGCTACATCTCTGCCTATGCCGCTCGCACCTCTCTTTTCGTAATTTCGTCT
CAGCGCTCGGATATCTCAAAGCCACTCTAGGCGCGCAGCAAGGCTCTCCGCGAACCCCAC
GATTAGCGTCTTCTGTATCTACCGGTAATTGCCAGCGAAGCTGCAGGCCCGTGCCTGTCC
GAAGCCCTTCAACGAACTCCCGTCCGTATCACCACCTGCCCTCCGACCGAGCTATCATAG
TATCCGAATGCACGGGCTTGCACGCCCAACAACCCCAACACACACGCCAAACCCACACCA
CCCCGGCGCGCTGCGTCATCACAATGACCAGTGCGCCAGCACCCCACGCACCAGCCCCGA
CCCGGATCTCCCTTGCGTACGGCAAACCCACGGCACAGTCCCGTTGTGTTGACGCGCCGG
TACACAGGATCGTGCAAAGCGAAACAACAATACACACAAACGCCGACACCGngccccaca
cgcacccttgccgngccttaatctgccccaaacgcaagcc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001480A_C01 KCC001480A_c01
         (820 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||S13383 hydroxyproline-rich glycoprotein - sorghum gi|228939...    43  0.005
sp|P24152|EXTN_SORBI EXTENSIN PRECURSOR (PROLINE-RICH GLYCOPROTE...    43  0.005
ref|NP_690573.1| hypothetical protein HZV_154 [Heliothis zea vir...    43  0.007
gb|AAO83650.1| putative protein Roco5 [Dictyostelium discoideum]       42  0.009
pir||S20500 hydroxyproline-rich glycoprotein - rice gi|433816|em...    42  0.016

>pir||S13383 hydroxyproline-rich glycoprotein - sorghum gi|228939|prf||1814452D
           Hyp-rich glycoprotein
          Length = 283

 Score = 43.1 bits (100), Expect = 0.005
 Identities = 58/232 (25%), Positives = 74/232 (31%), Gaps = 2/232 (0%)
 Frame = +2

Query: 104 TPELRRHHPHPEPDGKLTDYAAVRKPRKPVPLHTDTHP*HIPSKRHVPSRRTRKPSLFCG 283
           TP+     P PE   K        KP KP   H  T P + PS +  P   T KP+    
Sbjct: 38  TPKPPAKGPKPE---KPPTKGHGHKPEKPPKEHKPTPPTYTPSPKPTPPPATPKPT---- 90

Query: 284 TGTGTASTCATSLPMPLAPLFS*FRLSARISQSHSRRAARLSANPTISVFCIYR*LPAKL 463
             T T S    S   P  P  S        + S    A +    PT            K 
Sbjct: 91  PPTYTPSPKPKSPVYPPPPKAS---TPPTYTPSPKPPATKPPTYPT-----------PKP 136

Query: 464 QARACPKPFNELPSVSPPALRPSYHSIRMHGLARPTTPTHTPNPHHPGALRHHNDQCAST 643
            A   P P    PS  PP  +P           +PT P +TPNP  P      +      
Sbjct: 137 PATKPPTPPVYTPSPKPPVTKPP--------TPKPTPPVYTPNPKPPVTKPPTHTPSPKP 188

Query: 644 PRTSPDPDL--PCVRQTHGTVPLC*RAGTQDRAKRNNNTHKRRHRAPHAPLP 793
           P + P P +  P  +    + P           K   +T       PH P+P
Sbjct: 189 PTSKPTPPVYTPSPKPPKPSPPTYTPTPKPPATKPPTSTPTHPKPTPHTPIP 240

 Score = 42.0 bits (97), Expect = 0.012
 Identities = 37/117 (31%), Positives = 43/117 (36%), Gaps = 2/117 (1%)
 Frame = +1

Query: 442 PVIASEAAGPCLSEALQRTPVRITTCPPTELS*YPNARACTPNNPNTHAKPTPPRRAASS 621
           P        P        TP    T PPT     P+ +      P    KPTPP    + 
Sbjct: 115 PTYTPSPKPPATKPPTYPTPKPPATKPPTPPVYTPSPKPPVTKPPTP--KPTPPVYTPNP 172

Query: 622 Q*PVRQHPTHQPRPGSPLRTANPRHSPVVLTRRYTGSCKAKQQY--TQTPTPXPTRT 786
           + PV + PTH P P  P     P   PV     YT S K  +    T TPTP P  T
Sbjct: 173 KPPVTKPPTHTPSPKPPTSKPTP---PV-----YTPSPKPPKPSPPTYTPTPKPPAT 221

>sp|P24152|EXTN_SORBI EXTENSIN PRECURSOR (PROLINE-RICH GLYCOPROTEIN)
           gi|21627|emb|CAA39485.1| hydroxyproline-rich
           glycoprotein [Sorghum bicolor]
          Length = 283

 Score = 43.1 bits (100), Expect = 0.005
 Identities = 59/237 (24%), Positives = 75/237 (30%), Gaps = 2/237 (0%)
 Frame = +2

Query: 104 TPELRRHHPHPEPDGKLTDYAAVRKPRKPVPLHTDTHP*HIPSKRHVPSRRTRKPSLFCG 283
           TP+     P PE   K        KP KP   H  T P + PS +  P   T KP+    
Sbjct: 38  TPKPPAKGPKPE---KPPTKGHGHKPEKPPKEHKPTPPTYTPSPKPTPPPATPKPT---- 90

Query: 284 TGTGTASTCATSLPMPLAPLFS*FRLSARISQSHSRRAARLSANPTISVFCIYR*LPAKL 463
             T T S    S   P  P  S        + S    A +    PT            K 
Sbjct: 91  PPTYTPSPKPKSPVYPPPPKAS---TPPTYTPSPKPPATKPPTYPT-----------PKP 136

Query: 464 QARACPKPFNELPSVSPPALRPSYHSIRMHGLARPTTPTHTPNPHHPGALRHHNDQCAST 643
            A   P P    PS  PP  +P           +PT P +TPNP  P      +      
Sbjct: 137 PATKPPTPPVYTPSPKPPVTKPP--------TPKPTPPVYTPNPKPPVTKPPTHTPSPKP 188

Query: 644 PRTSPDPDL--PCVRQTHGTVPLC*RAGTQDRAKRNNNTHKRRHRAPHAPLPXLNLP 808
           P + P P +  P  +    + P           K   +T       PH P P  + P
Sbjct: 189 PTSKPTPPVYTPSPKPPKPSPPTYTPTPKPPATKPPTSTPTHPKPTPHTPYPQAHPP 245

 Score = 42.0 bits (97), Expect = 0.012
 Identities = 37/117 (31%), Positives = 43/117 (36%), Gaps = 2/117 (1%)
 Frame = +1

Query: 442 PVIASEAAGPCLSEALQRTPVRITTCPPTELS*YPNARACTPNNPNTHAKPTPPRRAASS 621
           P        P        TP    T PPT     P+ +      P    KPTPP    + 
Sbjct: 115 PTYTPSPKPPATKPPTYPTPKPPATKPPTPPVYTPSPKPPVTKPPTP--KPTPPVYTPNP 172

Query: 622 Q*PVRQHPTHQPRPGSPLRTANPRHSPVVLTRRYTGSCKAKQQY--TQTPTPXPTRT 786
           + PV + PTH P P  P     P   PV     YT S K  +    T TPTP P  T
Sbjct: 173 KPPVTKPPTHTPSPKPPTSKPTP---PV-----YTPSPKPPKPSPPTYTPTPKPPAT 221

>ref|NP_690573.1| hypothetical protein HZV_154 [Heliothis zea virus 1]
           gi|22671619|gb|AAN04446.1|AF451898_153 Orf154 [Heliothis
           zea virus 1]
          Length = 1505

 Score = 42.7 bits (99), Expect = 0.007
 Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
 Frame = +1

Query: 442 PVIASEAAGPCLSEALQRTPVRITTCPPTEL---S*YPNARACTPNNPNTHAKPTPPRRA 612
           P  A+ A+        + TP   +T  PT     +  P  +  + +NP      TP  + 
Sbjct: 521 PAEANSASKTASKHVSKPTPKPASTSNPTPKPVSTSNPTPKPGSTSNPTPKPASTPTPKP 580

Query: 613 ASSQ*PVRQHPTHQPRPGSPLRTANPRHSPVVLTRRYTGSCKAKQQYTQT---PTPXPTR 783
           AS    V + PT   +P S   T+ P   P  ++++ T S K   + T T   PTP PT 
Sbjct: 581 ASKPDSVSKQPT-PSKPTSSKPTSKPASKPESVSKQPTSS-KPTSKPTSTLTKPTPKPTS 638

Query: 784 TLAXP*SAP 810
           TL  P S P
Sbjct: 639 TLTKPTSKP 647

>gb|AAO83650.1| putative protein Roco5 [Dictyostelium discoideum]
          Length = 2800

 Score = 42.4 bits (98), Expect = 0.009
 Identities = 34/105 (32%), Positives = 41/105 (38%), Gaps = 1/105 (0%)
 Frame = +1

Query: 499  PVRITTCP-PTELS*YPNARACTPNNPNTHAKPTPPRRAASSQ*PVRQHPTHQPRPGSPL 675
            PV I   P PT LS    +   TP  P T   PT P  + SS   ++  PT +  P SP 
Sbjct: 2579 PVPILKTPTPTNLSPTSISTPTTPTTPTTPTTPTTPTNSTSSN--LKPTPTSKSNPSSPP 2636

Query: 676  RTANPRHSPVVLTRRYTGSCKAKQQYTQTPTPXPTRTLAXP*SAP 810
            + A    +                  TQTPTP P   L  P S P
Sbjct: 2637 QIATTATA------------------TQTPTPSPISVLKPPRSLP 2663

>pir||S20500 hydroxyproline-rich glycoprotein - rice gi|433816|emb|CAA43583.1|
           hydroxyproline-rich glycoprotein [Oryza sativa]
          Length = 369

 Score = 41.6 bits (96), Expect = 0.016
 Identities = 41/181 (22%), Positives = 64/181 (34%)
 Frame = +2

Query: 122 HHPHPEPDGKLTDYAAVRKPRKPVPLHTDTHP*HIPSKRHVPSRRTRKPSLFCGTGTGTA 301
           HH  P+P+    ++   + P    P  T T P + P+ +  P   T KP+    T T   
Sbjct: 55  HHHEPKPEKPPKEH---KPPAYTPPKPTPTPPTYTPTPKPTPPPYTPKPTPPAHTPTPPT 111

Query: 302 STCATSLPMPLAPLFS*FRLSARISQSHSRRAARLSANPTISVFCIYR*LPAKLQARACP 481
            T   + P P  P +                 A  +  PT  ++        K Q +  P
Sbjct: 112 YTPTPTPPKPTPPTY---------KPQPKPTPAPYTPTPTPPMY--------KPQPKPTP 154

Query: 482 KPFNELPSVSPPALRPSYHSIRMHGLARPTTPTHTPNPHHPGALRHHNDQCASTPRTSPD 661
            P+   P+ +PP  +P           +PT P +TP P  P            T + +P 
Sbjct: 155 APYT--PTPTPPTYKPQ---------PKPTPPPYTPTPAPPTYKPQPKPNPPPTYKPAPK 203

Query: 662 P 664
           P
Sbjct: 204 P 204

 Score = 33.5 bits (75), Expect = 4.3
 Identities = 20/72 (27%), Positives = 29/72 (39%)
 Frame = +1

Query: 568 NNPNTHAKPTPPRRAASSQ*PVRQHPTHQPRPGSPLRTANPRHSPVVLTRRYTGSCKAKQ 747
           + P  H +P P +     + P    P  +P P  P  T  P+ +P   T + T       
Sbjct: 51  HKPPHHHEPKPEKPPKEHKPPAYTPP--KPTPTPPTYTPTPKPTPPPYTPKPTPPAHTPT 108

Query: 748 QYTQTPTPXPTR 783
             T TPTP P +
Sbjct: 109 PPTYTPTPTPPK 120

 Score = 33.1 bits (74), Expect = 5.6
 Identities = 32/108 (29%), Positives = 40/108 (36%), Gaps = 3/108 (2%)
 Frame = +1

Query: 496 TPVRITTCPPTELS*YPNARACTPNNPNTHAKPTPPRRAASSQ*PVRQHPT---HQPRPG 666
           TP    T PP   +  P   A TP  P     PTPP+    +  P +  PT   + P P 
Sbjct: 86  TPTPKPTPPP--YTPKPTPPAHTPTPPTYTPTPTPPKPTPPTYKP-QPKPTPAPYTPTPT 142

Query: 667 SPLRTANPRHSPVVLTRRYTGSCKAKQQYTQTPTPXPTRTLAXP*SAP 810
            P+    P+ +P   T   T         T  P P PT     P  AP
Sbjct: 143 PPMYKPQPKPTPAPYTPTPTPP-------TYKPQPKPTPPPYTPTPAP 183

 Score = 32.3 bits (72), Expect = 9.5
 Identities = 24/78 (30%), Positives = 31/78 (38%), Gaps = 3/78 (3%)
 Frame = +1

Query: 592 PTPPRRAASSQ*PVRQHPT---HQPRPGSPLRTANPRHSPVVLTRRYTGSCKAKQQYTQT 762
           PTP + A   + P ++H     H+P+P  P +     H P      YT         T T
Sbjct: 35  PTPVKPAPKPEKPPKEHKPPHHHEPKPEKPPK----EHKPPA----YTPPKPTPTPPTYT 86

Query: 763 PTPXPTRTLAXP*SAPNA 816
           PTP PT     P   P A
Sbjct: 87  PTPKPTPPPYTPKPTPPA 104



EST assemble image


clone accession position
1 CM053d06_r AV389924 1 543
2 LCL012h07_r AV626646 298 820
3 MX012h02_r BP086613 300 639




Chlamydomonas reinhardtii
Kazusa DNA Research Institute