Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001467A_C01 KCC001467A_c01
(434 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP80664.1|AF479045_1 S28 ribosomal protein [Triticum aestivum] 117 4e-26
emb|CAA04565.1| rpS28 [Hordeum vulgare subsp. vulgare] 114 2e-25
sp|P46302|RS28_MAIZE 40S RIBOSOMAL PROTEIN S28 gi|629860|pir||S4... 114 3e-25
emb|CAA10101.1| ribosomal protein S28 [Prunus persica] gi|394772... 113 5e-25
emb|CAA10104.1| ribosomal protein S28 [Prunus persica] 110 3e-24
>gb|AAP80664.1|AF479045_1 S28 ribosomal protein [Triticum aestivum]
Length = 86
Score = 117 bits (293), Expect = 4e-26
Identities = 59/65 (90%), Positives = 62/65 (94%)
Frame = +3
Query: 18 MDAPAKLAIVMKVIGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILTLLESERE 197
MD KLA+V+KV+GRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILTLLESERE
Sbjct: 22 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILTLLESERE 81
Query: 198 ARRLR 212
ARRLR
Sbjct: 82 ARRLR 86
>emb|CAA04565.1| rpS28 [Hordeum vulgare subsp. vulgare]
Length = 65
Score = 114 bits (286), Expect = 2e-25
Identities = 58/65 (89%), Positives = 61/65 (93%)
Frame = +3
Query: 18 MDAPAKLAIVMKVIGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILTLLESERE 197
MD KLA+V+KV+GRTGSRGQVTQVRVKFLD QNRLIMRNVKGPVREGDILTLLESERE
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDHQNRLIMRNVKGPVREGDILTLLESERE 60
Query: 198 ARRLR 212
ARRLR
Sbjct: 61 ARRLR 65
>sp|P46302|RS28_MAIZE 40S RIBOSOMAL PROTEIN S28 gi|629860|pir||S49035 ribosomal protein
S28 - maize gi|557682|emb|CAA57636.1| small subunit
ribosomal protein S28 [Zea mays]
Length = 65
Score = 114 bits (285), Expect = 3e-25
Identities = 58/65 (89%), Positives = 61/65 (93%)
Frame = +3
Query: 18 MDAPAKLAIVMKVIGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILTLLESERE 197
MD KLA+V+KV+GRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPV EGDILTLLESERE
Sbjct: 1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60
Query: 198 ARRLR 212
ARRLR
Sbjct: 61 ARRLR 65
>emb|CAA10101.1| ribosomal protein S28 [Prunus persica] gi|3947721|emb|CAA10102.1|
ribosomal protein S28 [Prunus persica]
gi|3947723|emb|CAA10103.1| ribosomal protein S28 [Prunus
persica]
Length = 65
Score = 113 bits (283), Expect = 5e-25
Identities = 57/65 (87%), Positives = 61/65 (93%)
Frame = +3
Query: 18 MDAPAKLAIVMKVIGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILTLLESERE 197
MD+ K A+V+KV+GRTGSRGQVTQVRVKFLDDQNR IMRNVKGPVREGDILTLLESERE
Sbjct: 1 MDSTVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 60
Query: 198 ARRLR 212
ARRLR
Sbjct: 61 ARRLR 65
>emb|CAA10104.1| ribosomal protein S28 [Prunus persica]
Length = 65
Score = 110 bits (276), Expect = 3e-24
Identities = 56/65 (86%), Positives = 60/65 (92%)
Frame = +3
Query: 18 MDAPAKLAIVMKVIGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILTLLESERE 197
MD+ K A+V+KV+GRTGSRGQVTQVRVKFL DQNR IMRNVKGPVREGDILTLLESERE
Sbjct: 1 MDSTVKHAVVVKVMGRTGSRGQVTQVRVKFLGDQNRFIMRNVKGPVREGDILTLLESERE 60
Query: 198 ARRLR 212
ARRLR
Sbjct: 61 ARRLR 65
