KCC001465A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001465A_C01 KCC001465A_c01
gaggttggtttggtgcgttggtttGAAGCTGTGTCAACTTTCGGCGGAAATGTGTCACGT
CCAGAACTCCCTGTAGTCGTTCTGGCGAGGCTATGTTTTTTTAGAAACGCGCATGCCTAG
CGCGAGTGGGTAATCTGTGCGTATGCGCGTGTGTCACATGCTTTCTAACGAGTTTGTATG
GCGGTAGGTCCGTGCGCGGACTCTTAATGTGTTGGTATGTGTGAACGTGTGCGTGGCTTT
ATAAGGTTTGGAGGATGTTGTGAAAGTCTGTTTGCGGGTGCATGGAATACATAGCTCCGA
GCTGGCTGTTTTCTGACCGCATTGTTGACTTGCTTTGCTCTGTGTCGACGACAATCCTAA
TAGTATGGTAATTAGCTCGGCGGCAGCAAATCAAGCACGCACGGGCGCCCCGCGGCGCGA
CGCGTTGCTTTGTGGTGGCGCCCGGAGCGACGCAGGCTGCCGCCGGGCCTGTGTCGCGCA
ACGGCACCGCATATCTGTATGCGCATTTGGAATTGGACAGAACTGCATTGCGACTGGACG
AACGGCAGGTTGGACCCGAGGAACGCAGTGGGGTGTTTTGACACGCAAAGGACGTTTCGT
TTTAAGAGGGCTTCGTTCGGTGGCTGGTTGCTGAAAGCGCACCAAAGGCCCCGTGTGCGC
TTGTGTGTGTCTGTGTGTGCTCGGGGGATTGCTGGGGATGCGAGGTGAAAGGAGTCGTCG
GAGCCTGTCGGGGCCGGTTTTGGAGTTGTGGCGCATGGCGTGTGAGGTTATGAGGCCCCC
GGGGTTTGCGCTTGCCCGCAGGCACGTGGCACGTTGGCATTACGGTATCACCGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001465A_C01 KCC001465A_c01
         (834 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T31095 vitellogenin precursor - Oreochromis aureus gi|41028...    40  0.062
gb|AAB58410.1| merozoite surface protein-1 [Plasmodium berghei]        39  0.080
emb|CAD87782.1| SI:dZ25N23.1 (novel gene similar to Cas-Br-M (mu...    39  0.11
ref|XP_210394.1| similar to Contains similarity to extensin (atE...    39  0.11
gb|EAA20203.1| Virulence factor MVIN, putative [Plasmodium yoeli...    38  0.23

>pir||T31095 vitellogenin precursor - Oreochromis aureus gi|4102881|gb|AAD01615.1|
            vitellogenin precursor [Oreochromis aureus]
            gi|5725516|gb|AAD48085.1|AF072686_1 vitellogenin;
            phospholipoglycoprotein; yolk protein precursor
            [Oreochromis aureus]
          Length = 1788

 Score = 39.7 bits (91), Expect = 0.062
 Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 3/153 (1%)
 Frame = -3

Query: 754  APQLQNRPRQAPTTPFTSHPQQSPEHTQTHTSAHGAFGALSATSHRTKPS*NETSFA-CQ 578
            AP L+N    + ++  +S    S   + + +S   +  + S+ SHR++   +++S +   
Sbjct: 1081 APGLKNTTSSSSSSSSSSSSSSSSNKSSSSSSRSSSSQSSSSRSHRSRSRKSQSSSSQSS 1140

Query: 577  NTPLRSSGPTCRSSSRNAVLSNSKCAYRYA--VPLRDTGPAAACVAPGATTKQRVAPRGA 404
             +P  SS  +  SSSR++  S+S+ + R +     R     A  VAP  TT  RV+   +
Sbjct: 1141 RSPSSSSSSSSSSSSRSSSRSSSRSSSRSSSRSSSRSRTKMADIVAPIITTSTRVSSSSS 1200

Query: 403  RACLICCRRANYHTIRIVVDTEQSKSTMRSENS 305
            R+       ++  +   ++ + + +S  RS +S
Sbjct: 1201 RS----ASNSSSSSASYLLSSSKRRSRSRSSSS 1229

>gb|AAB58410.1| merozoite surface protein-1 [Plasmodium berghei]
          Length = 153

 Score = 39.3 bits (90), Expect = 0.080
 Identities = 35/138 (25%), Positives = 47/138 (33%)
 Frame = -3

Query: 817 PTCHVPAGKRKPRGPHNLTRHAPQLQNRPRQAPTTPFTSHPQQSPEHTQTHTSAHGAFGA 638
           P    P     P  P   T   P     P   PTTP    P    E T T  +A  A   
Sbjct: 11  PVASPPTPPTPPTPPTPPTPPTPPTLPTPPTLPTTPTPVTPAAPSEQTTTPEAATAASNP 70

Query: 637 LSATSHRTKPS*NETSFACQNTPLRSSGPTCRSSSRNAVLSNSKCAYRYAVPLRDTGPAA 458
            ++ S     +   ++ +  +TP  +S P   +SS  +  SN        V      PAA
Sbjct: 71  GASASETPASNPGASASSTPSTPAAASNPGASASSTPSTASNPSAPASSTVQPTQVQPAA 130

Query: 457 ACVAPGATTKQRVAPRGA 404
              AP A   Q     G+
Sbjct: 131 P-AAPAAVPAQPANSNGS 147

>emb|CAD87782.1| SI:dZ25N23.1 (novel gene similar to Cas-Br-M (murine) ecotropic
           retroviral transforming sequence (CBL)) [Danio rerio]
          Length = 681

 Score = 38.9 bits (89), Expect = 0.11
 Identities = 33/103 (32%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
 Frame = -1

Query: 696 PSNPPSTHRHTQA-HTGP------------LVRFQQPATERSPLKTKRPLRVKTPHCVPR 556
           P +P    R T A H GP            L+R   P+   SP  T R L  K  HC+ R
Sbjct: 285 PFDPLCERRKTAADHMGPHLNIPPVPPRLDLIRSPAPSPTASPKSTPRGLEPKRQHCIVR 344

Query: 555 VQPAVRPVAMQFCPIPNAHTDMRCRCATQARRQPASLRAPPQS 427
           +Q          C  P   T  RC C T  R  P  L+  P S
Sbjct: 345 LQ--------NVCSRPFPQTRPRCPC-THQRETPQLLQRRPGS 378

>ref|XP_210394.1| similar to Contains similarity to extensin (atExt1) from
           Arabidopsis thaliana gb|U43627 and is rich in proline
           and glycine.  EST gb|Z37262 comes from this gene [Homo
           sapiens]
          Length = 394

 Score = 38.9 bits (89), Expect = 0.11
 Identities = 41/140 (29%), Positives = 53/140 (37%), Gaps = 10/140 (7%)
 Frame = -1

Query: 825 P*CQRATCLRASANPGGLITSHAMRHNSKTGPDRLRRLLSPRIPSNPPSTHRHTQAHTG- 649
           P CQR+   RAS  PG      A + N       LR   +P +P+ PP+  R+    +G 
Sbjct: 252 PACQRSP-RRASGAPGVPAEPPACQRNP------LRASGTPGVPAEPPACLRNPLRASGA 304

Query: 648 PLVRFQQPATERSPLKT-------KRPLRVKTPHCVPRVQPAVRPVAMQFCPIPNAHTDM 490
           P V  + PA  R+P          + PLR     CVP   PA           P  H   
Sbjct: 305 PCVPAEPPACLRNPCVPAEPPACLRNPLRASGAPCVPAEPPACLRNPCVPSEPPACHRSP 364

Query: 489 RCRCATQA--RRQPASLRAP 436
            C C         PA L +P
Sbjct: 365 LCACGALCVPAEPPACLWSP 384

 Score = 35.0 bits (79), Expect = 1.5
 Identities = 42/148 (28%), Positives = 52/148 (34%), Gaps = 11/148 (7%)
 Frame = -3

Query: 802 PAGKRKPR---GPHNLTRHAPQLQNRPRQAPTTPFTSHPQQSPEHTQTHTSAHGAFG--- 641
           PA +R PR   G   +    P     PR+A  TP    P + P    +   A GA G   
Sbjct: 192 PACQRNPRRASGTPGVPAEPPACLRNPRRASGTPCV--PAEPPACQGSPLRACGAPGVPA 249

Query: 640 ---ALSATSHRTK--PS*NETSFACQNTPLRSSGPTCRSSSRNAVLSNSKCAYRYAVPLR 476
              A   +  R    P       ACQ  PLR+SG     +   A L N         PLR
Sbjct: 250 EPPACQRSPRRASGAPGVPAEPPACQRNPLRASGTPGVPAEPPACLRN---------PLR 300

Query: 475 DTGPAAACVAPGATTKQRVAPRGARACL 392
            +G       P A  +    P    ACL
Sbjct: 301 ASGAPCVPAEPPACLRNPCVPAEPPACL 328

>gb|EAA20203.1| Virulence factor MVIN, putative [Plasmodium yoelii yoelii]
          Length = 1197

 Score = 37.7 bits (86), Expect = 0.23
 Identities = 34/124 (27%), Positives = 47/124 (37%), Gaps = 14/124 (11%)
 Frame = -1

Query: 726  RLRRLLSPR----IPSNPPSTHRHTQAHTGP----------LVRFQQPATERSPLKTKRP 589
            +L  LL+P+    +P +PP  HRH Q    P          +     P   R   +    
Sbjct: 1032 QLPALLAPQDPGDLPRHPPVVHRHGQGRAAPPGPGGHRPGAMDTGLGPGPHRGHGRQPPG 1091

Query: 588  LRVKTPHCVPRVQPAVRPVAMQFCPIPNAHTDMRCRCATQARRQPASLRAPPQSNASRRG 409
            L    P  + R  PAVRP   +     +   D R R   + RR    +RA P   A R  
Sbjct: 1092 LVHLAPAYLGRADPAVRPQGNRRTASGHRPADRRNRKEDRDRRHRRLVRAGPGRTAGRGS 1151

Query: 408  APVR 397
             P+R
Sbjct: 1152 GPLR 1155



EST assemble image


clone accession position
1 HC054e08_r AV636049 1 421
2 HC072g10_r AV637409 25 443
3 CM052c11_r AV390501 259 805
4 HC073f02_r AV637475 325 834
5 LCL079h08_r AV630506 435 688




Chlamydomonas reinhardtii
Kazusa DNA Research Institute