KCC001459A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001459A_C01 KCC001459A_c01
ttagtgcacgcggtatttgcccatgagcgaggcactgtattattacagcgctgtgccctg
cacggggctccatcgattggATTGGCTTAGCGGTGCTTGCGAGAGAAGCAAAATGTCGTA
CACTTTGTTGGTGGCATGATTTCTCCTTACAATCATGGGTATCGAGGCCATCAATGTGTT
GGTCGTTCTGGTGTAATATGCATGTACGCGAGGCTGAATGCAGCTGGTGCAGGGCTGGAA
ACGGCGGGGAGGCAGGGGAGAAGTGGGTGTCCCCGCTGACAGCAGCAACTTCGCCCTCAG
CTCTCCGGCGTGTCCATGTACGGTAATCAGGAGAAGTAGATGCAGGGTCGTATGGCCATA
TGGTCGTATGGTCGGATGTATATGATACTGTACGCCGTGTCAGAAATCTGCTCTCGTAAT
GAATGATCGAGTGAACTTACGTCCCGTATCAAAATGGTTTCGGTCAGTTATTGAGGCTGT
TGATCCGAAACACGGGGGTCCCCGCGGGGTCTGGCATTGCGCTCCTTGGGCCCCCTCTTT
TTGCGCTTTGTTTGTGGCGGGTGATGTATGCATACGCGGGAATGCTGAAGGGTTTGCGTG
GTGTTGACCAAGGCGTGCACATGATCCTGGAAGGAGAGTACTTCATGAACTTCTATAGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001459A_C01 KCC001459A_c01
         (660 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_132868.1| similar to hypothetical protein DKFZp547D2210 [...    33  2.9
ref|NP_783627.1| RIKEN cDNA C530028O21 gene [Mus musculus] gi|26...    33  2.9
ref|XP_232352.2| similar to RIKEN cDNA C530028O21 gene [Rattus n...    33  2.9
gb|AAQ11190.1| brain protein 1 [Mus musculus]                          33  2.9
ref|NP_710152.1| hypothetical protein DKFZp547D2210 [Homo sapien...    33  3.8

>ref|XP_132868.1| similar to hypothetical protein DKFZp547D2210 [Homo sapiens] [Mus
           musculus]
          Length = 278

 Score = 33.5 bits (75), Expect = 2.9
 Identities = 12/22 (54%), Positives = 15/22 (67%)
 Frame = -3

Query: 538 RGGPRSAMPDPAGTPVFRINSL 473
           RGGPR  MP P G P F++N +
Sbjct: 252 RGGPRPGMPQPKGAPAFQLNRI 273

>ref|NP_783627.1| RIKEN cDNA C530028O21 gene [Mus musculus]
           gi|26350163|dbj|BAC38721.1| unnamed protein product [Mus
           musculus]
          Length = 278

 Score = 33.5 bits (75), Expect = 2.9
 Identities = 12/22 (54%), Positives = 15/22 (67%)
 Frame = -3

Query: 538 RGGPRSAMPDPAGTPVFRINSL 473
           RGGPR  MP P G P F++N +
Sbjct: 252 RGGPRPGMPQPKGAPAFQLNRI 273

>ref|XP_232352.2| similar to RIKEN cDNA C530028O21 gene [Rattus norvegicus]
          Length = 242

 Score = 33.5 bits (75), Expect = 2.9
 Identities = 12/22 (54%), Positives = 15/22 (67%)
 Frame = -3

Query: 538 RGGPRSAMPDPAGTPVFRINSL 473
           RGGPR  MP P G P F++N +
Sbjct: 216 RGGPRPGMPQPKGAPAFQLNRI 237

>gb|AAQ11190.1| brain protein 1 [Mus musculus]
          Length = 135

 Score = 33.5 bits (75), Expect = 2.9
 Identities = 12/22 (54%), Positives = 15/22 (67%)
 Frame = -3

Query: 538 RGGPRSAMPDPAGTPVFRINSL 473
           RGGPR  MP P G P F++N +
Sbjct: 109 RGGPRPGMPQPKGAPAFQLNRI 130

>ref|NP_710152.1| hypothetical protein DKFZp547D2210 [Homo sapiens]
           gi|14388569|dbj|BAB60803.1| hypothetical protein [Macaca
           fascicularis] gi|23273050|gb|AAH35736.1| Hypothetical
           protein DKFZp547D2210 [Homo sapiens]
          Length = 282

 Score = 33.1 bits (74), Expect = 3.8
 Identities = 12/22 (54%), Positives = 15/22 (67%)
 Frame = -3

Query: 538 RGGPRSAMPDPAGTPVFRINSL 473
           RGGPR  MP P G P F++N +
Sbjct: 256 RGGPRPGMPHPKGAPAFQLNRI 277



EST assemble image


clone accession position
1 CM051c03_r AV389822 1 263
2 MX014h11_r BP086709 154 660




Chlamydomonas reinhardtii
Kazusa DNA Research Institute