KCC001454A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001454A_C01 KCC001454A_c01
ATAACACATACGTACTTGCACAATTAGACACCGTCGGTGAACGCTGACGCAGTAAACCTT
GTCCCGGAACGGCCTGGTCGCTTAGGCTTCACGCAAAGCGCTGATTTTGTTACTAGAAAG
CATATTAAAGATGTCACCAACATATGCTGAGCATCTGAGCGTCATCAAGGGCTTCTGCGA
CAAGGCAGATGGAAAGGACAAGCTTACCGCGCTCATACAGTATGCCTGCCTCTTCATTTC
CGCCGGCGAGCCCGGCAACATCAAGAAGATCCAAGCGTCTGTGACCGCCGCCCGGAAGGT
CTTCCGTGTCATGCGGCCACTGGAGCTCATGACGCCGCTGCTGATCACGCCGGGCTTCAC
CGGCAAGCAGCCCATGTTGCTGGAGGCCGTCAACAAGGTCAAGGCGGTGCTCATGGCCGT
GTACTTCGGTGCCGATCACGTGGTGTGGGCGCACCAGATCGGCCTCATCACAGACAAGAA
GGTCTGGCGAGAGGTACCAGAAGCTGTCGCTGTGGTCTTGGGCTGCTGGGCAGCGTGTGC
ACGGTTGCCACGGCAGAGCTACCAGATTGCGGCCAAGAGCGTGGTGCGCAAGGAGGGCGA
GAGCGAGGAGGACTACGCGCGGCGGGTGGAGGAGGTGAAGAAGCAGATCAACCAGCACCT
GTTTGTGCTCATCCATGGACTGTTCCAGGCGGCTCTGGCAGCGGGCCTGCTGCAGCTGCT
GCCGCTCAAGCCGCGCACGGTGGGCCTGCTGGGCGTGGTGGCCTCGGCCATGAACTGCTA
CCTGCTGCTGCCCGCCTACCCCAAGCCCGTGGCCGCTGCCAAGGCCAAGTCGGCGTAGAA
GGCGTCGTTAGGCGCCGTGCGGCGTTGTAAGGTGTGGCACAAGGGCGTCGGCACGCTAGA
GCGCTAGGGCTTGTATGCGAGAGGAGGGAGGCAGGATTGTGGATGATGTGGCGGAGGGGC
CTGGGCTGGGCTGCGGCCAGCCAGCGTCGGCGCTGGCTGTAACACTCAGGTGGCGTTCTT
GTTTCATGTGTGTTTGCGTGTGGTTTTGCTGTGTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001454A_C01 KCC001454A_c01
         (1055 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_566055.1| expressed protein [Arabidopsis thaliana] gi|306...    98  2e-19
ref|NP_563636.1| expressed protein [Arabidopsis thaliana] gi|255...    98  2e-19
dbj|BAC24830.1| OSJNBa0038F22.7 [Oryza sativa (japonica cultivar...    94  3e-18
pir||T02473 hypothetical protein At2g45740 [imported] - Arabidop...    89  1e-16
gb|AAF75750.1|AF261140_1 unknown [Lycopersicon esculentum]             89  2e-16

>ref|NP_566055.1| expressed protein [Arabidopsis thaliana]
           gi|30690116|ref|NP_850441.1| expressed protein
           [Arabidopsis thaliana] gi|15450880|gb|AAK96711.1|
           Unknown protein [Arabidopsis thaliana]
           gi|20197204|gb|AAC28551.2| expressed protein
           [Arabidopsis thaliana] gi|21537163|gb|AAM61504.1|
           unknown [Arabidopsis thaliana]
          Length = 236

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 72/231 (31%), Positives = 112/231 (48%), Gaps = 14/231 (6%)
 Frame = +2

Query: 155 LSVIKGFCDKADGKDKLTALIQYACLFISAGEPGNIKKIQASVTAARKVFRVMRPLELMT 334
           L+++  + +KA+ +DKL   IQY   F+S G+PG  + +  S + ARKVFR+ + +  + 
Sbjct: 12  LALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFRLFKFVNDLH 71

Query: 335 PLLITPGFTGKQPMLLEAVNKVKAVLMAVYFGADHVVWAHQIGLITDKKVWREVPEAVA- 511
             LI+P   G  P+ L  + K K  L++ +   D +VW  + G+  +K    E  E +  
Sbjct: 72  G-LISPVPKG-TPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNK----ERAELLGR 125

Query: 512 VVLGCW---AACARLPR--------QSYQIAAKSVVRKEGESEEDYARRVEEVKKQINQH 658
           + L CW   + C  L           S +   K +       +EDY  ++    K+ N+ 
Sbjct: 126 ISLFCWMGSSVCTTLVEVGEMGRLSSSMKKIEKGLKNGNKYQDEDYRAKL----KKSNER 181

Query: 659 LFVLIHGLFQAALAAGLLQLLPLK--PRTVGLLGVVASAMNCYLLLPAYPK 805
              LI       +AAGLLQL P K  PR  G  G + S ++CY LLP  PK
Sbjct: 182 SLALIKSAMDIVVAAGLLQLAPTKITPRVTGAFGFITSIISCYQLLPTRPK 232

>ref|NP_563636.1| expressed protein [Arabidopsis thaliana] gi|25511713|pir||A86150
           T1N6.24 protein - Arabidopsis thaliana
           gi|8671852|gb|AAF78415.1|AC009273_21 Contains similarity
           to an unknown protein F4I18.28 gi|7486466 from
           Arabidopsis thaliana BAC F4I18 gb|AC004665.  ESTs
           gb|F14309, gb|AI998750, gb|995247, gb|T14224 and
           gb|AI995247 come from this gene
           gi|12083290|gb|AAG48804.1|AF332441_1 unknown protein
           [Arabidopsis thaliana] gi|17381255|gb|AAL36046.1|
           At1g01820/T1N6_18 [Arabidopsis thaliana]
           gi|20453367|gb|AAM19922.1| At1g01820/T1N6_18
           [Arabidopsis thaliana] gi|21555588|gb|AAM63892.1|
           unknown [Arabidopsis thaliana]
          Length = 235

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 72/236 (30%), Positives = 113/236 (47%), Gaps = 14/236 (5%)
 Frame = +2

Query: 140 TYAEHLSVIKGFCDKADGKDKLTALIQYACLFISAGEPGNIKKIQASVTAARKVFRVMRP 319
           T    L ++  + +KA+ +DK+   IQY   F+S G+PG  + +  + + ARKVFR+ + 
Sbjct: 6   TTRAELGLVVVYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKNTSLARKVFRLFKF 65

Query: 320 LELMTPLLITPGFTGKQPMLLEAVNKVKAVLMAVYFGADHVVWAHQIGLITDKKVWREVP 499
           +  +   LI+P   G  P+ L  + K K  L++ +   D +VW  + G+  DK    E  
Sbjct: 66  VNDL-HALISPVPKG-TPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDK----ERA 119

Query: 500 EAVA-VVLGCW---AACARLPR--------QSYQIAAKSVVRKEGESEEDYARRVEEVKK 643
           E +  + L CW   + C  L           S +   K +  K+    E Y  +VE    
Sbjct: 120 EILGRISLFCWMGSSVCTSLVEVGELGRLSASIKKLEKEIGNKDKHQNEQYRAKVE---- 175

Query: 644 QINQHLFVLIHGLFQAALAAGLLQLLPLK--PRTVGLLGVVASAMNCYLLLPAYPK 805
           + N+    LI       +A GLLQL P K  PR  G  G  +S ++CY LLP++PK
Sbjct: 176 KSNERSLALIKAGMDVVVAFGLLQLAPKKVTPRVTGAFGFASSLISCYQLLPSHPK 231

>dbj|BAC24830.1| OSJNBa0038F22.7 [Oryza sativa (japonica cultivar-group)]
          Length = 422

 Score = 94.4 bits (233), Expect = 3e-18
 Identities = 71/246 (28%), Positives = 121/246 (48%), Gaps = 6/246 (2%)
 Frame = +2

Query: 86  ASRKALILLLESILKMSPTYAEHLSVIKGFCDKADGKDKLTALIQYACLFISAGEPGNIK 265
           A R A +  L S+  +    A+ L+++  + +KA+ +DK+   IQY   F+S G+PG  +
Sbjct: 178 AERIASVHQLYSMSSLESARAD-LALLILYLNKAEARDKICRAIQYGSKFVSNGQPGPAQ 236

Query: 266 KIQASVTAARKVFRVMRPLELMTPLLITPGFTGKQPMLLEAVNKVKAVLMAVYFGADHVV 445
            +  S + ARKVFR+ + +  +  L+  P      P++L  + K K  L++ +   D +V
Sbjct: 237 NVDKSTSLARKVFRLFKFVNDLHALISPPAKGTPLPLIL--LGKSKNALLSTFLFLDQIV 294

Query: 446 WAHQIGLITDKKVWREVPE-AVAVVLGCWAACARLPRQSYQIAAKSVVRKEGESEEDYAR 622
           WA + G+  +K+    + + A    LG     + +     Q  +KS+ + E E +     
Sbjct: 295 WAGRTGIYKNKERAEFLSKIAFYCFLGSNTCTSIIEVAELQRLSKSMKKLEKELKHQELL 354

Query: 623 RVEEVKKQI---NQHLFVLIHGLFQAALAAGLLQLLPLK--PRTVGLLGVVASAMNCYLL 787
           + E+ + ++   N+    LI       +A GLLQL P K  PR  G  G  +S + CY L
Sbjct: 355 KNEQYQMKLQKCNERRLALIKSSLDIVVAIGLLQLAPKKVTPRVTGAFGFASSLIACYQL 414

Query: 788 LPAYPK 805
           LPA  K
Sbjct: 415 LPAPAK 420

>pir||T02473 hypothetical protein At2g45740 [imported] - Arabidopsis thaliana
          Length = 239

 Score = 89.4 bits (220), Expect = 1e-16
 Identities = 67/223 (30%), Positives = 107/223 (47%), Gaps = 14/223 (6%)
 Frame = +2

Query: 155 LSVIKGFCDKADGKDKLTALIQYACLFISAGEPGNIKKIQASVTAARKVFRVMRPLELMT 334
           L+++  + +KA+ +DKL   IQY   F+S G+PG  + +  S + ARKVFR+ + +  + 
Sbjct: 12  LALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFRLFKFVNDLH 71

Query: 335 PLLITPGFTGKQPMLLEAVNKVKAVLMAVYFGADHVVWAHQIGLITDKKVWREVPEAVA- 511
             LI+P   G  P+ L  + K K  L++ +   D +VW  + G+  +K    E  E +  
Sbjct: 72  G-LISPVPKG-TPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNK----ERAELLGR 125

Query: 512 VVLGCW---AACARLPR--------QSYQIAAKSVVRKEGESEEDYARRVEEVKKQINQH 658
           + L CW   + C  L           S +   K +       +EDY  ++    K+ N+ 
Sbjct: 126 ISLFCWMGSSVCTTLVEVGEMGRLSSSMKKIEKGLKNGNKYQDEDYRAKL----KKSNER 181

Query: 659 LFVLIHGLFQAALAAGLLQLLPLK--PRTVGLLGVVASAMNCY 781
              LI       +AAGLLQL P K  PR  G  G + S ++CY
Sbjct: 182 SLALIKSAMDIVVAAGLLQLAPTKITPRVTGAFGFITSIISCY 224

>gb|AAF75750.1|AF261140_1 unknown [Lycopersicon esculentum]
          Length = 235

 Score = 88.6 bits (218), Expect = 2e-16
 Identities = 67/225 (29%), Positives = 106/225 (46%), Gaps = 10/225 (4%)
 Frame = +2

Query: 173 FCDKADGKDKLTALIQYACLFISAGEPGNIKKIQASVTAARKVFRVMRPLELMTPLLITP 352
           + +KA+ +DK+   IQY   F+S G+PG  + +  S + ARK+FR+ + +  +   LI+P
Sbjct: 17  YLNKAEARDKICRAIQYGAKFLSDGQPGTAQNVDKSTSLARKLFRLFKFINDL-HALISP 75

Query: 353 GFTGKQPMLLEAVNKVKAVLMAVYFGADHVVWAHQIGLITDKKVWREVPEAVA-VVLGCW 529
              G  P+ L  + K K  L++ Y   D  VW  + G+  +K    E  E +  +    W
Sbjct: 76  NAPG-TPLPLILLGKSKNALLSTYLFLDQFVWLGRSGIYKNK----EQTELIGRISFFSW 130

Query: 530 ------AACARLPRQSYQIAAKSVVRKEGESEEDYARRVEEVKKQ-INQHLFVLIHGLFQ 688
                  A   +       ++   + KE ++ + Y       K Q  N+    LI     
Sbjct: 131 MGSSICTALVEIGELGRLSSSMKKLEKELKNTDKYMNEQYRSKLQKSNERSLALIKAGTD 190

Query: 689 AALAAGLLQLLPLK--PRTVGLLGVVASAMNCYLLLPAYPKPVAA 817
             +A GLLQL P K  PR  G  G V+S ++CY LLP+ PK  A+
Sbjct: 191 IVVAVGLLQLAPKKVTPRVTGAFGFVSSLISCYQLLPSSPKDKAS 235



EST assemble image


clone accession position
1 MX052g01_r BP088144 1 593
2 HC064a05_r AV636776 3 570
3 LC060h07_r AV623239 87 587
4 LC029c01_r AV620957 102 612
5 LCL070e05_r AV629988 104 463
6 LC008e09_r AV619453 105 663
7 LC008f01_r AV619457 105 509
8 HC034c09_r AV634506 108 588
9 LC067a08_r AV623669 108 661
10 LC041b04_r AV621801 112 581
11 LC071d09_r AV623988 112 633
12 CM050e12_r AV389772 114 376
13 MX042f08_r BP087740 114 462
14 HC001c11_r AV631889 115 666
15 HC060b07_r AV636489 121 649
16 HC080b04_r AV637973 121 574
17 MX214f10_r BP089835 124 574
18 HC022h02_r AV633604 124 639
19 LCL036d07_r AV628081 129 651
20 HC080h04_r AV638025 132 570
21 LCL033d12_r AV627891 141 375
22 HC052e12_r AV635911 180 650
23 MX222c10_r BP090329 216 675
24 HC032f06_r AV634379 226 758
25 HC036h08_r AV634716 240 731
26 HC029h09_r AV634155 244 813
27 HC085g06_r AV638388 328 784
28 CM075h12_r AV391643 394 932
29 HC033a07_r AV634410 404 928
30 HC023e12_r AV633655 443 873
31 MX227c06_r BP090670 499 755
32 LC049f03_r AV622430 529 1065
33 CM072g12_r AV391457 553 1181
34 LCL076b11_r AV630256 554 947
35 MX028b05_r BP087205 567 969
36 LC021b07_r AV620365 567 1088
37 CM078h11_r AV391856 605 1128
38 LC009d07_r AV619517 610 1158
39 LC078e05_r AV624495 730 1194
40 MX232e11_r BP091019 804 1091




Chlamydomonas reinhardtii
Kazusa DNA Research Institute