KCC001448A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001448A_C01 KCC001448A_c01
catgaatggatggatttcggtcgctgtgcgcgcatcgaccaagatgtgcatgcacgcagg
caggcaagggcgtgagggcaTTGTTCGTTTACAAGCCCTGAGACTGCTGCGGGTCTAACA
CGTGCATTTGTGGATGTTCTCAGGGTAGCTGGTGGGCTGAGAAGGATACAGGACCAGCTT
GCATTGGCATCCGGCAGGCACACGCGCACGCCGACAGGGTAGGACATCAATACATTGGAT
GCCGGTTACGGCATCGGCAGGACAGCGAGGGATGGACAGGTTGCGTGTGGAGTGGGGGCA
CAGGAACGCAATCGGTGACGTGCGTGTGGTGACAGTTGATAGGGAGGGCCCCCAGAGGGC
AGAAACAAATGGGCTACGATGTGCTGATGCTGTGCGTGTGTGTGTGCGTGTGCGTGGATT
TGCTGTGTTTTGTTGGCGTGTCCGTTGGAAGTGTTATTCATAAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001448A_C01 KCC001448A_c01
         (464 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_502384.1| fibronectin, type III and Protein of unknown fu...    38  0.050
pir||T19473 hypothetical protein C25G4.10 - Caenorhabditis elegans     38  0.050
ref|NP_502387.1| protein of unknown function DB and fibronectin,...    38  0.050
dbj|BAB68010.1| OJ1111_G12.11 [Oryza sativa (japonica cultivar-g...    35  0.32
dbj|BAA95483.1| Kielin [Xenopus laevis]                                31  0.49

>ref|NP_502384.1| fibronectin, type III and Protein of unknown function DB and
           immunoglobulin-like (4N247) [Caenorhabditis elegans]
           gi|14530363|emb|CAA94577.2| Hypothetical protein
           C25G4.10 [Caenorhabditis elegans]
           gi|14530560|emb|CAB05615.2| Hypothetical protein
           C25G4.10 [Caenorhabditis elegans]
          Length = 1208

 Score = 38.1 bits (87), Expect = 0.050
 Identities = 26/93 (27%), Positives = 38/93 (39%), Gaps = 3/93 (3%)
 Frame = -3

Query: 315 PIAFLCPHSTRNLSIPRCPADAVTGIQCIDVLPCRRARVPAGCQCKLVLYPSQPTSYPEN 136
           P  F C  +  +LS   CP D     +      C+  ++P  C        + P S  EN
Sbjct: 389 PNGFRCTGAGSDLSYC-CPHDGTHSSEEFTSC-CKEQKMPESCMSSCQYNMTLPESCKEN 446

Query: 135 IH---KCTC*TRSSLRACKRTMPSRPCLPACMH 46
           ++   +C       LR C +   S+PC  ACMH
Sbjct: 447 LNTWVQCASEGHDHLRCCLQEEVSKPCQTACMH 479

>pir||T19473 hypothetical protein C25G4.10 - Caenorhabditis elegans
          Length = 1526

 Score = 38.1 bits (87), Expect = 0.050
 Identities = 26/93 (27%), Positives = 38/93 (39%), Gaps = 3/93 (3%)
 Frame = -3

Query: 315 PIAFLCPHSTRNLSIPRCPADAVTGIQCIDVLPCRRARVPAGCQCKLVLYPSQPTSYPEN 136
           P  F C  +  +LS   CP D     +      C+  ++P  C        + P S  EN
Sbjct: 707 PNGFRCTGAGSDLSYC-CPHDGTHSSEEFTSC-CKEQKMPESCMSSCQYNMTLPESCKEN 764

Query: 135 IH---KCTC*TRSSLRACKRTMPSRPCLPACMH 46
           ++   +C       LR C +   S+PC  ACMH
Sbjct: 765 LNTWVQCASEGHDHLRCCLQEEVSKPCQTACMH 797

>ref|NP_502387.1| protein of unknown function DB and fibronectin, type III and
           immunoglobulin-like (4N247) [Caenorhabditis elegans]
           gi|7507038|pir||T24412 hypothetical protein T04A11.3 -
           Caenorhabditis elegans gi|3879386|emb|CAB05606.1|
           Hypothetical protein T04A11.3 [Caenorhabditis elegans]
          Length = 1014

 Score = 38.1 bits (87), Expect = 0.050
 Identities = 26/93 (27%), Positives = 38/93 (39%), Gaps = 3/93 (3%)
 Frame = -3

Query: 315 PIAFLCPHSTRNLSIPRCPADAVTGIQCIDVLPCRRARVPAGCQCKLVLYPSQPTSYPEN 136
           P  F C  +  +LS   CP D     +      C+  ++P  C        + P S  EN
Sbjct: 210 PNGFRCTGAGSDLSYC-CPHDGTHSSEEFTSC-CKEQKMPESCMSSCQYNMTLPESCKEN 267

Query: 135 IH---KCTC*TRSSLRACKRTMPSRPCLPACMH 46
           ++   +C       LR C +   S+PC  ACMH
Sbjct: 268 LNTWVQCASEGHDHLRCCLQEEVSKPCQTACMH 300

>dbj|BAB68010.1| OJ1111_G12.11 [Oryza sativa (japonica cultivar-group)]
          Length = 301

 Score = 35.4 bits (80), Expect = 0.32
 Identities = 31/100 (31%), Positives = 42/100 (42%)
 Frame = -1

Query: 317 HRLRSCAPTPHATCPSLAVLPMP*PASNVLMSYPVGVRVCLPDANASWSCILLSPPATLR 138
           HR +   PTP  T P+   LP P P+S      P G R      +     +   PP  LR
Sbjct: 170 HREKRGTPTPTTTMPAARGLPPPQPSSPPPPPPPTGRR----SPSTGLRTLARLPPPLLR 225

Query: 137 TSTNARVRPAAVSGLVNEQCPHALACLRACTSWSMRAQRP 18
            ST     P   +G    + P  LA + A +S+S  + RP
Sbjct: 226 AST-----PLRFAGR-RTRTPPPLAAVAALSSFSPASPRP 259

>dbj|BAA95483.1| Kielin [Xenopus laevis]
          Length = 2327

 Score = 31.2 bits (69), Expect(2) = 0.49
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
 Frame = +3

Query: 258 QDSEGWTG-----CVWSGGTGTQSVTCVW*QLIGRAPRGQKQMGYDVLMLCVCV-CVC 413
           QDSE W       CV  GG+ T SV   W Q +G    G+     D+  +  C+ C+C
Sbjct: 349 QDSETWKKDACNICVCVGGSVTCSVRKDWPQCLGCFHEGRNYNNKDIFSVGPCMSCIC 406

 Score = 22.3 bits (46), Expect(2) = 0.49
 Identities = 6/19 (31%), Positives = 9/19 (46%)
 Frame = +1

Query: 388 CCACVCACAWICCVLLACP 444
           C +C+C    + C    CP
Sbjct: 401 CMSCICQSGEVSCTPKLCP 419



EST assemble image


clone accession position
1 HC038f11_r AV634843 1 464
2 CM050b06_r AV389777 164 446




Chlamydomonas reinhardtii
Kazusa DNA Research Institute