Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001424A_C01 KCC001424A_c01
(602 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564119.1| expressed protein [Arabidopsis thaliana] gi|888... 140 1e-32
gb|AAM63846.1| small nuclear ribonucleoprotein, putative [Arabid... 140 1e-32
gb|AAO50746.1| similar to expressed protein; protein id: At1g205... 134 1e-30
ref|NP_177757.1| small nuclear ribonucleo protein -related [Arab... 131 6e-30
gb|AAH45929.1| Similar to small nuclear ribonucleoprotein D3 pol... 126 3e-28
>ref|NP_564119.1| expressed protein [Arabidopsis thaliana]
gi|8886923|gb|AAF80609.1|AC069251_2 F2D10.7 [Arabidopsis
thaliana] gi|15724292|gb|AAL06539.1|AF412086_1
At1g20580/F2D10_6 [Arabidopsis thaliana]
gi|20334748|gb|AAM16235.1| At1g20580/F2D10_6
[Arabidopsis thaliana]
Length = 131
Score = 140 bits (353), Expect = 1e-32
Identities = 61/92 (66%), Positives = 80/92 (86%)
Frame = +3
Query: 324 AKGIGIPVKLLHEAEGHVVTVELKSGEMYRGELCDAEDNMNCQLKDVTATGRDGRVTQLA 503
++ +GIPVKLLHEA GH+VTVELKSGE+YRG + + EDN NCQL+D+T T +DG+V+QL
Sbjct: 2 SRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLE 61
Query: 504 HLFIRGSRVRFFIIPDMLKNAPMFKRIDPKFK 599
H+FIRGS+VRF +IPD+LK+APMFKR+D + K
Sbjct: 62 HVFIRGSKVRFMVIPDILKHAPMFKRLDARIK 93
>gb|AAM63846.1| small nuclear ribonucleoprotein, putative [Arabidopsis thaliana]
Length = 131
Score = 140 bits (353), Expect = 1e-32
Identities = 61/92 (66%), Positives = 80/92 (86%)
Frame = +3
Query: 324 AKGIGIPVKLLHEAEGHVVTVELKSGEMYRGELCDAEDNMNCQLKDVTATGRDGRVTQLA 503
++ +GIPVKLLHEA GH+VTVELKSGE+YRG + + EDN NCQL+D+T T +DG+V+QL
Sbjct: 2 SRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLE 61
Query: 504 HLFIRGSRVRFFIIPDMLKNAPMFKRIDPKFK 599
H+FIRGS+VRF +IPD+LK+APMFKR+D + K
Sbjct: 62 HVFIRGSKVRFMVIPDILKHAPMFKRLDARIK 93
>gb|AAO50746.1| similar to expressed protein; protein id: At1g20580.1, supported by
cDNA: 27792., supported by cDNA: gi_15724291, supported
by cDNA: gi_20334747 [Arabidopsis thaliana]
[Dictyostelium discoideum]
Length = 146
Score = 134 bits (337), Expect = 1e-30
Identities = 58/85 (68%), Positives = 77/85 (90%)
Frame = +3
Query: 333 IGIPVKLLHEAEGHVVTVELKSGEMYRGELCDAEDNMNCQLKDVTATGRDGRVTQLAHLF 512
IGIPVK+LHEA+GH+VTVELK+GE+YRG L ++EDNMNC++K++T T RDGR +Q+ + +
Sbjct: 3 IGIPVKILHEADGHIVTVELKNGELYRGTLIESEDNMNCRMKNITVTARDGRNSQMEYCY 62
Query: 513 IRGSRVRFFIIPDMLKNAPMFKRID 587
+RGS+VRF I+PD+LKNAPMFKRID
Sbjct: 63 VRGSKVRFIILPDILKNAPMFKRID 87
>ref|NP_177757.1| small nuclear ribonucleo protein -related [Arabidopsis thaliana]
gi|25347711|pir||E96790 hypothetical protein F15M4.20
[imported] - Arabidopsis thaliana
gi|6554488|gb|AAF16670.1|AC012394_19 putative small
nuclear ribonucleoprotein Sm D3; 79504-78381
[Arabidopsis thaliana]
gi|6573711|gb|AAF17631.1|AC009978_7 T23E18.23
[Arabidopsis thaliana]
gi|14190503|gb|AAK55732.1|AF380651_1 At1g76300/F15M4_20
[Arabidopsis thaliana] gi|15809764|gb|AAL06810.1|
At1g76300/F15M4_20 [Arabidopsis thaliana]
gi|21592857|gb|AAM64807.1| small nuclear
ribonucleoprotein, putative [Arabidopsis thaliana]
Length = 128
Score = 131 bits (330), Expect = 6e-30
Identities = 58/93 (62%), Positives = 78/93 (83%)
Frame = +3
Query: 324 AKGIGIPVKLLHEAEGHVVTVELKSGEMYRGELCDAEDNMNCQLKDVTATGRDGRVTQLA 503
++ +GIPVKLLHE+ GH+V+VE+KSGE+YRG + + EDN NCQL+++T T +DG+V+QL
Sbjct: 2 SRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLE 61
Query: 504 HLFIRGSRVRFFIIPDMLKNAPMFKRIDPKFKN 602
H+FIRGS VRF +IPDMLKNAPMFK + K K+
Sbjct: 62 HVFIRGSLVRFLVIPDMLKNAPMFKDVRGKGKS 94
>gb|AAH45929.1| Similar to small nuclear ribonucleoprotein D3 polypeptide 18kDa
[Danio rerio]
Length = 128
Score = 126 bits (316), Expect = 3e-28
Identities = 55/87 (63%), Positives = 73/87 (83%)
Frame = +3
Query: 333 IGIPVKLLHEAEGHVVTVELKSGEMYRGELCDAEDNMNCQLKDVTATGRDGRVTQLAHLF 512
IG+P+K+LHEAEGH+VT E +GE+YRG+L +AEDNMNCQ+ ++T T RDGRV+QL ++
Sbjct: 3 IGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVSQLEQVY 62
Query: 513 IRGSRVRFFIIPDMLKNAPMFKRIDPK 593
IRGS++RF I+PDMLKNAPM K + K
Sbjct: 63 IRGSKIRFLILPDMLKNAPMLKSMKNK 89
