KCC001383A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001383A_C01 KCC001383A_c01
cgcaCCAAAGCGTGCACGCATAGCTCTCCTTCAACCAAGCCGGGGTTTTCCCTTACACAA
CTCACAACTCACAAACATGGCGGGAGACAAGACCAACGGCGCTGCTGAGCCGGTGTTTCT
GCTTTTCGGCAAGTCGGGCTGGATCGGTGGCCTGCTGCAGGAGGAGCTGAAGAAGCAGGG
AGCCAAGTTCCACCTCGCGGACGCGCGTATGGAGGACCGCTCTGCCGTTGTTGCGGACAT
TGAGAAGTACAAGCCCACCCACGTGCTGAACGCGGCCGGCCTGACTGGCCGCCCCAACGT
CGACTGGTGCGAGACGCACAAGCTGGAGACCATCCGCGCCAACGTGATTGGCTGCCTGAC
CCTGGCGGACGTGTGCAACCAGCGCGGCATCCACATGACCTACTACGGCACCGGCTGCAT
TTTCCACTACGACGATGACTTCCCGGTCAACAGCGGCAAGGGCTTCAAGGAGTCCGACAA
GCCCAACTTCACCGGCTCCTACTACAGCCACACTAAGGCCATCGTGGAGGACCTGATCAA
GCAGTACGACAACGTGCTGACCCTGCGCGTGCGCATGCCCATCATCGCCGACCTCACCTA
CCCTCGCAACTTCATCACCAAGATCATTAAGTACGACAAGGTCATCAACATCCCCAACAG
CATGACTGTGCTGCCGGAGCTTCTGCCCATGTCCCTGGAGATGGCCAAGCGCGGCCTGAC
TGGCATCATGAACTTCACCAACCCCGGCGCCGTCAGCCACAACGAGATCCTTGAGATGTA
CAAGGAGTACATTGACCCCGAGTTCACCTGGTCCAACTTCTCGGTGGAGGAGCAGGCCAA
GGTCATCGTGGCGCCCCGCTCCAACAACCTGCTGGACACGGCGCGGATAGAGGGTGAGTT
CCCGGAGCTGCTGCCCATCAAGGAGTCGTCCGGAAATAGTGTACGAGCCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001383A_C01 KCC001383A_c01
         (950 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM65668.1| unknown [Arabidopsis thaliana]                         394  e-108
ref|NP_564806.1| expressed protein [Arabidopsis thaliana] gi|254...   393  e-108
ref|NP_177978.1| NAD-dependent epimerase/dehydratase family [Ara...   392  e-108
gb|AAK62450.1|AF387005_1 Unknown protein [Arabidopsis thaliana]       389  e-107
ref|NP_188097.1| NAD-dependent epimerase/dehydratase family [Ara...   384  e-105

>gb|AAM65668.1| unknown [Arabidopsis thaliana]
          Length = 300

 Score =  394 bits (1011), Expect = e-108
 Identities = 183/284 (64%), Positives = 226/284 (79%)
 Frame = +2

Query: 77  MAGDKTNGAAEPVFLLFGKSGWIGGLLQEELKKQGAKFHLADARMEDRSAVVADIEKYKP 256
           M  D    ++   FL++GK+GWIGGLL +  + QG  +     R++DR ++VADIE  KP
Sbjct: 1   MVADANGSSSSFNFLIYGKTGWIGGLLGKLCESQGISYTYGSGRLQDRQSIVADIESVKP 60

Query: 257 THVLNAAGLTGRPNVDWCETHKLETIRANVIGCLTLADVCNQRGIHMTYYGTGCIFHYDD 436
           +HV NAAG+TGRPNVDWCE+HK+ETIR NV G LTLAD+C ++G+ +  Y TGCIF YD 
Sbjct: 61  SHVFNAAGVTGRPNVDWCESHKVETIRTNVAGTLTLADICREKGLVLINYATGCIFEYDS 120

Query: 437 DFPVNSGKGFKESDKPNFTGSYYSHTKAIVEDLIKQYDNVLTLRVRMPIIADLTYPRNFI 616
             P+ SG GFKE D PNFTGS+YS TKA+VE+L+K Y+NV T RVRMPI +DLT PRNFI
Sbjct: 121 GHPLGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKNYENVCTXRVRMPISSDLTNPRNFI 180

Query: 617 TKIIKYDKVINIPNSMTVLPELLPMSLEMAKRGLTGIMNFTNPGAVSHNEILEMYKEYID 796
           TKI +Y+KV++IPNSMT+L ELLP+S+EMAKR LTGI NFTNPG VSHNEILEMY++YID
Sbjct: 181 TKIARYEKVVDIPNSMTILDELLPISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRDYID 240

Query: 797 PEFTWSNFSVEEQAKVIVAPRSNNLLDTARIEGEFPELLPIKES 928
           P FTW NF++EEQAKVIVAPRSNN LD  +++ EFPEL+ IKES
Sbjct: 241 PSFTWKNFTLEEQAKVIVAPRSNNELDATKLKTEFPELMSIKES 284

>ref|NP_564806.1| expressed protein [Arabidopsis thaliana] gi|25404387|pir||B96655
           hypothetical protein F16P17.17 [imported] - Arabidopsis
           thaliana gi|8493590|gb|AAF75813.1|AC011000_16 Contains
           weak similarity to 5-epimerase from Saccharopolyspora
           erythraea gb|L37354.  ESTs gb|T41773, gb|R29767,
           gb|T88368, gb|F13963 come from this gene. [Arabidopsis
           thaliana] gi|12083298|gb|AAG48808.1|AF332445_1 unknown
           protein [Arabidopsis thaliana]
          Length = 301

 Score =  393 bits (1009), Expect = e-108
 Identities = 182/271 (67%), Positives = 223/271 (82%)
 Frame = +2

Query: 116 FLLFGKSGWIGGLLQEELKKQGAKFHLADARMEDRSAVVADIEKYKPTHVLNAAGLTGRP 295
           FL++GK+GWIGGLL +  + QG  +     R++DR ++VADIE  KP+HV NAAG+TGRP
Sbjct: 15  FLIYGKTGWIGGLLGKLCEAQGITYTYGSGRLQDRQSIVADIESVKPSHVFNAAGVTGRP 74

Query: 296 NVDWCETHKLETIRANVIGCLTLADVCNQRGIHMTYYGTGCIFHYDDDFPVNSGKGFKES 475
           NVDWCE+HK+ETIR NV G LTLAD+C ++G+ +  Y TGCIF YD   P+ SG GFKE 
Sbjct: 75  NVDWCESHKVETIRTNVAGTLTLADICREKGLVLINYATGCIFEYDSGHPLGSGIGFKEE 134

Query: 476 DKPNFTGSYYSHTKAIVEDLIKQYDNVLTLRVRMPIIADLTYPRNFITKIIKYDKVINIP 655
           D PNFTGS+YS TKA+VE+L+K Y+NV TLRVRMPI +DLT PRNFITKI +Y+KV++IP
Sbjct: 135 DTPNFTGSFYSKTKAMVEELLKNYENVCTLRVRMPISSDLTNPRNFITKIARYEKVVDIP 194

Query: 656 NSMTVLPELLPMSLEMAKRGLTGIMNFTNPGAVSHNEILEMYKEYIDPEFTWSNFSVEEQ 835
           NSMT+L ELLP+S+EMAKR LTGI NFTNPG VSHNEILEMY++YIDP FTW NF++EEQ
Sbjct: 195 NSMTILDELLPISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQ 254

Query: 836 AKVIVAPRSNNLLDTARIEGEFPELLPIKES 928
           AKVIVAPRSNN LD  +++ EFPEL+ IKES
Sbjct: 255 AKVIVAPRSNNELDATKLKTEFPELMSIKES 285

>ref|NP_177978.1| NAD-dependent epimerase/dehydratase family [Arabidopsis thaliana]
            gi|25406555|pir||C96814 hypothetical protein T30F21.10
            [imported] - Arabidopsis thaliana
            gi|4836876|gb|AAD30579.1|AC007260_10 Similar to
            dTDP-D-glucose 4,6-dehydratase [Arabidopsis thaliana]
            gi|14596091|gb|AAK68773.1| Similar to dTDP-D-glucose
            4,6-dehydratase [Arabidopsis thaliana]
            gi|20148285|gb|AAM10033.1| similar to dTDP-D-glucose
            4,6-dehydratase [Arabidopsis thaliana]
          Length = 669

 Score =  392 bits (1007), Expect = e-108
 Identities = 185/271 (68%), Positives = 223/271 (82%)
 Frame = +2

Query: 116  FLLFGKSGWIGGLLQEELKKQGAKFHLADARMEDRSAVVADIEKYKPTHVLNAAGLTGRP 295
            FL++GK+GWIGGLL +   KQG  +     R+EDRS+++ DI+  KPTHV N+AG+TGRP
Sbjct: 387  FLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSSLLQDIQSVKPTHVFNSAGVTGRP 446

Query: 296  NVDWCETHKLETIRANVIGCLTLADVCNQRGIHMTYYGTGCIFHYDDDFPVNSGKGFKES 475
            NVDWCE+HK ETIRANV G LTLADVC + G+ M  + TGCIF YDD  P  SG GFKE 
Sbjct: 447  NVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYDDKHPEGSGIGFKEE 506

Query: 476  DKPNFTGSYYSHTKAIVEDLIKQYDNVLTLRVRMPIIADLTYPRNFITKIIKYDKVINIP 655
            D PNFTGS+YS TKA+VE+L+K+YDNV TLRVRMPI +DL  PRNFITKI +Y+KV+NIP
Sbjct: 507  DTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIP 566

Query: 656  NSMTVLPELLPMSLEMAKRGLTGIMNFTNPGAVSHNEILEMYKEYIDPEFTWSNFSVEEQ 835
            NSMTVL ELLP+S+EMAKR L GI NFTNPG VSHNEILEMY++YI+PEF W+NF++EEQ
Sbjct: 567  NSMTVLDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYRDYINPEFKWANFTLEEQ 626

Query: 836  AKVIVAPRSNNLLDTARIEGEFPELLPIKES 928
            AKVIVAPRSNN +D ++++ EFPELL IKES
Sbjct: 627  AKVIVAPRSNNEMDASKLKKEFPELLSIKES 657

>gb|AAK62450.1|AF387005_1 Unknown protein [Arabidopsis thaliana]
          Length = 301

 Score =  389 bits (1000), Expect = e-107
 Identities = 181/271 (66%), Positives = 222/271 (81%)
 Frame = +2

Query: 116 FLLFGKSGWIGGLLQEELKKQGAKFHLADARMEDRSAVVADIEKYKPTHVLNAAGLTGRP 295
           FL++GK+GWIGGLL +  + QG  +     R++DR ++VADIE  KP+HV NAAG+TGRP
Sbjct: 15  FLIYGKTGWIGGLLGKLCEAQGITYTYGSGRLQDRQSIVADIESVKPSHVFNAAGVTGRP 74

Query: 296 NVDWCETHKLETIRANVIGCLTLADVCNQRGIHMTYYGTGCIFHYDDDFPVNSGKGFKES 475
           NVDWCE+HK+ETIR NV G LTLAD+C ++G+ +  Y TGCIF YD    + SG GFKE 
Sbjct: 75  NVDWCESHKVETIRTNVAGTLTLADICREKGLVLINYATGCIFEYDSGHHLGSGIGFKEE 134

Query: 476 DKPNFTGSYYSHTKAIVEDLIKQYDNVLTLRVRMPIIADLTYPRNFITKIIKYDKVINIP 655
           D PNFTGS+YS TKA+VE+L+K Y+NV TLRVRMPI +DLT PRNFITKI +Y+KV++IP
Sbjct: 135 DTPNFTGSFYSKTKAMVEELLKNYENVCTLRVRMPISSDLTNPRNFITKIARYEKVVDIP 194

Query: 656 NSMTVLPELLPMSLEMAKRGLTGIMNFTNPGAVSHNEILEMYKEYIDPEFTWSNFSVEEQ 835
           NSMT+L ELLP+S+EMAKR LTGI NFTNPG VSHNEILEMY++YIDP FTW NF++EEQ
Sbjct: 195 NSMTILDELLPISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQ 254

Query: 836 AKVIVAPRSNNLLDTARIEGEFPELLPIKES 928
           AKVIVAPRSNN LD  +++ EFPEL+ IKES
Sbjct: 255 AKVIVAPRSNNELDATKLKTEFPELMSIKES 285

>ref|NP_188097.1| NAD-dependent epimerase/dehydratase family [Arabidopsis thaliana]
            gi|11994590|dbj|BAB02645.1| gene_id:T21E2.5~similar to
            dTDP-D-glucose 4,6-dehydratase [Arabidopsis thaliana]
            gi|19310443|gb|AAL84958.1| AT3g14790/T21E2_4 [Arabidopsis
            thaliana] gi|22655464|gb|AAM98324.1| At3g14790/T21E2_4
            [Arabidopsis thaliana]
          Length = 664

 Score =  384 bits (986), Expect = e-105
 Identities = 180/271 (66%), Positives = 220/271 (80%)
 Frame = +2

Query: 116  FLLFGKSGWIGGLLQEELKKQGAKFHLADARMEDRSAVVADIEKYKPTHVLNAAGLTGRP 295
            FL++GK+GW+GGLL +  +KQG  +     R+EDR++++ADI   KP+HV NAAGLTGRP
Sbjct: 382  FLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIKPSHVFNAAGLTGRP 441

Query: 296  NVDWCETHKLETIRANVIGCLTLADVCNQRGIHMTYYGTGCIFHYDDDFPVNSGKGFKES 475
            NVDWCE+HK ETIR NV G LTLADVC +  + M  + TGCIF YD   P  SG GFKE 
Sbjct: 442  NVDWCESHKTETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDAAHPEGSGIGFKEE 501

Query: 476  DKPNFTGSYYSHTKAIVEDLIKQYDNVLTLRVRMPIIADLTYPRNFITKIIKYDKVINIP 655
            DKPNFTGS+YS TKA+VE+L++++DNV TLRVRMPI +DL  PRNFITKI +Y+KV+NIP
Sbjct: 502  DKPNFTGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIP 561

Query: 656  NSMTVLPELLPMSLEMAKRGLTGIMNFTNPGAVSHNEILEMYKEYIDPEFTWSNFSVEEQ 835
            NSMT+L ELLP+S+EMAKR L GI NFTNPG VSHNEILEMYK YI+P+F WSNF++EEQ
Sbjct: 562  NSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKSYIEPDFKWSNFNLEEQ 621

Query: 836  AKVIVAPRSNNLLDTARIEGEFPELLPIKES 928
            AKVIVAPRSNN +D A++  EFPE+L IK+S
Sbjct: 622  AKVIVAPRSNNEMDGAKLSKEFPEMLSIKDS 652



EST assemble image


clone accession position
1 LC085d07_r AV624986 1 396
2 HC025f03_r AV633814 5 457
3 MXL018f05_r BP094136 5 218
4 HC058b08_r AV636337 5 436
5 LC050g05_r AV622520 6 507
6 LC100c05_r AV625954 7 461
7 LCL023a02_r AV627224 7 351
8 HC075h06_r AV637658 10 542
9 HC070f03_r AV637244 24 494
10 LC002f03_r AV619014 394 881
11 LC062c06_r AV623337 403 935
12 MX252a06_r BP092281 430 951
13 CM069f12_r AV391240 430 957
14 CM043d09_r AV389472 430 743




Chlamydomonas reinhardtii
Kazusa DNA Research Institute