KCC001379A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001379A_C01 KCC001379A_c01
acacattgccacagtcatacgcatcaaagCTGCGTTGAAAGTCCCCGACTCTCGCTGACC
GAGCTTCCAAGCGGTGCGCACATATTGGATTTACAAAGGATCTCCACAAGCAATCGGTGG
CAGCACCAGCTTCTGTGGCTCAAGCTTGTTACGGACTCCCTTGAAGAAACCCCTTTCCGG
AGCAGCTTGAGCGGCTGTGCTTTGGGGAAAGCGGCCTGGCAGTACGGAACGTCACTGTCA
CGAACGGCGATGGGCTGCTGCCCGGAAGGACTCATCGACTGGGACGGCGTCTACCAGACC
GTCCAGCCGCACGCGACCTTCGCCGCCGGAGTGCTCTTCGGCGTGGCGTGGTGGGTATGG
GCAGATGCGCTGCTCTATTCCATTGCGGTGGGGGGCGCGTCCTTTTCGCCGGTGACGCTG
GTGCCGGGGCTGGTCGCCACGGCCGCCGTGGTGCTGATGAACTTCGTCAGCCGCGAGGAG
GTGATGGCAGACTACCTGGATGAGGCCGCCACGATGCGTGCGAAGCTGCTGCTGATGGTG
TCGTACCTGGTGTCGCTGGGCGCCATTGGGGCGGCGGTGGGGCTGCTGGTGCACGACCAC
ACCAAGGGCGGCAAGGACCTATGGGTGGGCGCGAGCGGCGTGCTTCAGAGCTGCCTGGTG
GTGGCCAGCGGGCTCTCATGCTGGTTCTTCCACAGCGCATCCGACTCACCAGGGATGGGT
TACGGGTATATATGAGCGACGGTTGGGGGCCTGGCGCACCCGCGTCATGGCAAAGTTGAG
TACATGCATGTTTGGTCGTGTAGTTTTGGTGCGCTGAGGTTATTGTTGACGTGCCCCAAA
GGGAGGAGGATGGCACCCTA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001379A_C01 KCC001379A_c01
         (860 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_564477.1| expressed protein [Arabidopsis thaliana] gi|152...    80  3e-14
ref|XP_331491.1| predicted protein [Neurospora crassa] gi|289267...    69  1e-10
ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|...    66  6e-10
gb|AAF78235.1| 163R* [porcine adenovirus 3]                            65  1e-09
ref|XP_330525.1| predicted protein [Neurospora crassa] gi|289256...    62  2e-08

>ref|NP_564477.1| expressed protein [Arabidopsis thaliana] gi|15292703|gb|AAK92720.1|
           unknown protein [Arabidopsis thaliana]
           gi|19310689|gb|AAL85075.1| unknown protein [Arabidopsis
           thaliana]
          Length = 135

 Score = 80.5 bits (197), Expect = 3e-14
 Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
 Frame = +1

Query: 325 AGVLFGVAWWVWADALLYSIAVGGASFSPVTLVPGLVATAAVVLMNFVSREEVMADYLDE 504
           +G +FG  WW W DA++ S          V  +PG+ A+   ++ N V +E++     DE
Sbjct: 15  SGAVFGTGWWFWVDAVVCS----SIQVPFVHYLPGIFASLGALMFNCVRKEDIDYSPYDE 70

Query: 505 AATMRAKLLLMVSYLVSLGAIGAAVGLLVHDHT-KGGKDLWVGASGVLQSCLVVASGLSC 681
               R KL L ++Y+V+  ++ A+VGLL+ D   K G   W G +GV Q   V+ SGL  
Sbjct: 71  GE-WRLKLWLFIAYVVAFVSLAASVGLLIQDSVVKTGPSTWTGVAGVFQCVFVLISGLMY 129

Query: 682 WFFHS 696
           W  HS
Sbjct: 130 WTSHS 134

>ref|XP_331491.1| predicted protein [Neurospora crassa] gi|28926713|gb|EAA35680.1|
           predicted protein [Neurospora crassa]
          Length = 283

 Score = 68.6 bits (166), Expect = 1e-10
 Identities = 65/218 (29%), Positives = 81/218 (36%), Gaps = 17/218 (7%)
 Frame = -2

Query: 838 WGTSTITSAHQNYTTKHACTQLCHDAGAPGPQPSLIYTRNPSLVSRMRCGRTSMRARWPP 659
           W TST+      YTT       C  A    P  S + T     VS   C  +S     PP
Sbjct: 57  WTTSTV------YTTAVHTITSCPPAVTLCPAHSTVVTTVTIPVSTTVCPVSSGTPPPPP 110

Query: 658 PGSSEARRSRPPIGPCRPWCGRAPAAPPPPQWRPATPGTTPSAAASHASWRPHP----GS 491
           P +S      PP     P     P+APPPP   P    + PSA  + +   P P    G+
Sbjct: 111 PPASSGSPPPPPQSSVPPASSGGPSAPPPPPPSPPASSSAPSAPPASSGAPPAPPASSGA 170

Query: 490 LPSPPRG*RSSSAPRRPWRPA-------------PAPASPAKRTRPPPQWNRAAHLPIPT 350
            P+PP    S S P  P  PA             P+P++PA    PPP  N     P  T
Sbjct: 171 PPAPPASSGSPSPPPPPHPPASTGAPSAPPASTQPSPSNPASSAAPPPPHNSG---PSAT 227

Query: 349 TPRRRALRRRRSRAAGRSGRRRPSR*VLPGSSPSPFVT 236
            P   +     S   G  G   P+      +SP P VT
Sbjct: 228 EP---SASGSSSGGGGGGGGAPPT----ATTSPGPVVT 258

>ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|dbj|BAC45786.1|
           blr0521 [Bradyrhizobium japonicum USDA 110]
          Length = 745

 Score = 66.2 bits (160), Expect = 6e-10
 Identities = 59/201 (29%), Positives = 73/201 (35%), Gaps = 18/201 (8%)
 Frame = -2

Query: 664 PPPGSSEARRSRPPIGPCRPWCGRAPAAPPPPQWRPATPGTTPSAA-ASHASWRPHPG-- 494
           PPP ++  R + PP  P  P    AP  PPPP   P  P   P+AA   HA   P P   
Sbjct: 83  PPPAAAPPRPAAPPPPPPPPAARPAPPPPPPPPAAPKQPSPPPAAAPQQHAPTPPPPAPP 142

Query: 493 ------SLPSPPRG*RSSSAPRRPWRPA---------PAPASPAKRTRPPPQWNRAAHLP 359
                 + P+PP       AP  P  PA         P PA PA R  P P        P
Sbjct: 143 AARPAPTPPAPPPAAAPQHAPPPPPPPAARPTPTPPPPPPAGPAARPTPAPTATPTPVAP 202

Query: 358 IPTTPRRRALRRRRSRAAGRSGRRRPSR*VLPGSSPSPFVTVTFRTARPLSPKHSRSSCS 179
            P  P  R      +     +    P+    P ++P+P  T       P +P   R    
Sbjct: 203 PPAAPTARPGSPAPAATPAPTPTPAPTATPAPTATPAPGST-------PGAPPAGRPGAP 255

Query: 178 GKGFLQGSP*QA*ATEAGAAT 116
             G   GSP  A +  A  AT
Sbjct: 256 PPGVRPGSPPAAGSPPAPGAT 276

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 63/218 (28%), Positives = 79/218 (35%), Gaps = 19/218 (8%)
 Frame = -2

Query: 799 TTKHACTQLCHDAG-APGPQPSLIYTRNPSLVSRMRCGRTSMRARWPPPGSSEARRSRPP 623
           TT     QL + A  A G  P ++    P             + + PP G   A    PP
Sbjct: 11  TTALTAMQLANTASHAQGASPLVVAQAQPQETG------PDGKPKQPPKGPPGAA---PP 61

Query: 622 IGPCRPWCGRAPAAPPPPQWRPATPGTTPSAAASHASWRPHPGSLPSPPRG*RSSSAPRR 443
             P RP      AAPP P   P  P   P   A+     P P + P+PP      +AP++
Sbjct: 62  AAPARPAAPPPAAAPPHPPAAPP-PAAAPPRPAAPPPPPPPPAARPAPPPPPPPPAAPKQ 120

Query: 442 PWRP-----------APAPASPAKRTRP----PPQWNRAAHLPIPTTP--RRRALRRRRS 314
           P  P            P PA PA R  P    PP      H P P  P   R        
Sbjct: 121 PSPPPAAAPQQHAPTPPPPAPPAARPAPTPPAPPPAAAPQHAPPPPPPPAARPTPTPPPP 180

Query: 313 RAAGRSGRRRPSR*VLPGSSPSPFV-TVTFRTARPLSP 203
             AG + R  P+    P ++P+P        TARP SP
Sbjct: 181 PPAGPAARPTPA----PTATPTPVAPPPAAPTARPGSP 214

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 56/181 (30%), Positives = 65/181 (34%), Gaps = 1/181 (0%)
 Frame = -2

Query: 664 PPPGSSEARRSRP-PIGPCRPWCGRAPAAPPPPQWRPATPGTTPSAAASHASWRPHPGSL 488
           PPP +  AR   P P     P    AP A P P   PA PG+TP A        P  G  
Sbjct: 202 PPPAAPTARPGSPAPAATPAPTPTPAPTATPAPTATPA-PGSTPGA--------PPAGRP 252

Query: 487 PSPPRG*RSSSAPRRPWRPAPAPASPAKRTRPPPQWNRAAHLPIPTTPRRRALRRRRSRA 308
            +PP G R  S P     PAP  A+PA  T P P                         A
Sbjct: 253 GAPPPGVRPGSPPAAGSPPAPG-ATPAPTTTPAP----------------------GGTA 289

Query: 307 AGRSGRRRPSR*VLPGSSPSPFVTVTFRTARPLSPKHSRSSCSGKGFLQGSP*QA*ATEA 128
              SGR  P+    PG++ +P  T T      L+P   R         QG    A A  A
Sbjct: 290 TPPSGRPGPASTPAPGAA-TPAPTATPAPGGALTPPPGRPGAGPTPGPQGGTPPAGAPAA 348

Query: 127 G 125
           G
Sbjct: 349 G 349

 Score = 48.5 bits (114), Expect = 1e-04
 Identities = 61/207 (29%), Positives = 77/207 (36%), Gaps = 20/207 (9%)
 Frame = -2

Query: 763 AGAPGPQPSLIYTRNPSLVSRMRCGRTSMRARWPPPGSSEARRSRPPIGPCRPWCGRAPA 584
           A  P P P+   T  P+  +    G T        PG+  A R   P    RP    A  
Sbjct: 217 AATPAPTPTPAPTATPAPTATPAPGST--------PGAPPAGRPGAPPPGVRPGSPPAAG 268

Query: 583 APPPPQWRPATPGTTPS--AAASHASWRPHPGSLPSPPRG*RSSSAPRRPWRP-APAPAS 413
           +PP P   PA P TTP+    A+  S RP P S P+P     + +A   P     P P  
Sbjct: 269 SPPAPGATPA-PTTTPAPGGTATPPSGRPGPASTPAPGAATPAPTATPAPGGALTPPPGR 327

Query: 412 PAKRTRPPPQWNR-AAHLPIPTTPRR-RALRRRRSRAAGRSGRRRPSR*VLPGSSPS--- 248
           P     P PQ     A  P   TP          +R A  +G   PS   +PGS+ +   
Sbjct: 328 PGAGPTPGPQGGTPPAGAPAAGTPAAPPQAGGLPARPAAPAGAAAPS--TVPGSAAATPP 385

Query: 247 --------PFVTVTFRTA----RPLSP 203
                   P VT  F+ A     PL P
Sbjct: 386 PNRAQFAPPTVTPAFQAAPTVVAPLPP 412

 Score = 36.2 bits (82), Expect = 0.71
 Identities = 33/100 (33%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
 Frame = -2

Query: 664 PPPGSSEARRSRPPIGPCRPWCGRA---PAAPPPPQWRPATPGTTPSAAASHASWRPHPG 494
           PPPG   A  +  P G   P    A   PAAPP     PA P     AAA        PG
Sbjct: 323 PPPGRPGAGPTPGPQGGTPPAGAPAAGTPAAPPQAGGLPARPAAPAGAAAPSTV----PG 378

Query: 493 SLPSPPRG*RSSSAPRR---PWRPAPAPASPAKRTRPPPQ 383
           S  + P   R+  AP      ++ AP   +P      PPQ
Sbjct: 379 SAAATPPPNRAQFAPPTVTPAFQAAPTVVAPLPPPPRPPQ 418

>gb|AAF78235.1| 163R* [porcine adenovirus 3]
          Length = 163

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 54/163 (33%), Positives = 69/163 (42%), Gaps = 3/163 (1%)
 Frame = -2

Query: 724 RNPSLVSRMRCGRTSMRARWPPPGSSEARRSRPPIGPCRPWCGRAPAAPPP--PQWRPAT 551
           R+P  V  +  G    +A+ PPP SS      PP+    PWC     APPP  PQ  P  
Sbjct: 5   RSPGWVV-VAAGLPLQQAQGPPPQSSSGPSHPPPL----PWCSLQRRAPPPRPPQSPPPL 59

Query: 550 PGTTPSAAASHASWRPHPGSLPSPPRG*RSSSAPRRPWRPAPAPASPAKRTRPPPQWNRA 371
           P   P         RP P ++  PP    +++A   P   APA + P  R+ PP +    
Sbjct: 60  PPRPPP--------RPWPAAVSPPPPAAPAAAAAAPP---APAASCPPPRSDPPMETPPG 108

Query: 370 AHLPIPTTPRRR-ALRRRRSRAAGRSGRRRPSR*VLPGSSPSP 245
              P P +P    A  R  SR A RSG+ RP       S P P
Sbjct: 109 TQTPSPPSPAAAVAAERSGSRPAPRSGQGRPPLRRSHSSRPLP 151

>ref|XP_330525.1| predicted protein [Neurospora crassa] gi|28925602|gb|EAA34623.1|
           predicted protein [Neurospora crassa]
          Length = 452

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 55/177 (31%), Positives = 72/177 (40%), Gaps = 15/177 (8%)
 Frame = -2

Query: 730 YTRNPSLVSRMRCGRTSMRARWPPPGSSEA---RRSRPPIGPCRPWC-----GRAPAAPP 575
           Y  +P   SR      ++ A  PPPG++     R S P   P  P       G +   PP
Sbjct: 155 YLSDPETTSRSAPKPPTVSAPRPPPGAAPTIPGRPSAPTFHPSMPNLKKTANGASSKPPP 214

Query: 574 PPQWR--PATPGTTPSAAASHASWRPH-----PGSLPSPPRG*RSSSAPRRPWRPAPAPA 416
           PP  +  P  PG+   +AA H+S  P      P   P PP    SS+AP  P  PAP P 
Sbjct: 215 PPVGKKPPPPPGSRKPSAAIHSSAPPSAPPPPPSFAPPPP----SSAAPSLP--PAPPPP 268

Query: 415 SPAKRTRPPPQWNRAAHLPIPTTPRRRALRRRRSRAAGRSGRRRPSR*VLPGSSPSP 245
            P    RPPP  +R+   P P  P   +        A ++  R  S    P + P P
Sbjct: 269 PPTAAPRPPPAPSRSQ--PPPPPPPSSSTSNLSQNIAVQAAIRAASSASSPAAPPPP 323

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 48/173 (27%), Positives = 66/173 (37%), Gaps = 3/173 (1%)
 Frame = -2

Query: 661 PPGSSEARRSRPPIGPCRPWCGRAPAAPPPPQWRPATPGTTPSAAASHASWRPHPGSLPS 482
           PP  S A  S PP  P  P    AP  PP P      P   PS++ S+ S      ++ +
Sbjct: 251 PPPPSSAAPSLPPAPPPPPPTA-APRPPPAPSRSQPPPPPPPSSSTSNLSQNI---AVQA 306

Query: 481 PPRG*RSSSAPRRPWRPAPAPASPAKRTRPPPQWNRAAHLPIP---TTPRRRALRRRRSR 311
             R   S+S+P  P  P P P++P + T   P  +  A  P P   + P   +L    S 
Sbjct: 307 AIRAASSASSPAAPPPPPPPPSAPPRSTASSPSHSAPAPPPPPPPSSAPVPPSLSHSPST 366

Query: 310 AAGRSGRRRPSR*VLPGSSPSPFVTVTFRTARPLSPKHSRSSCSGKGFLQGSP 152
            + RSG    S        PS F+     T    SP    S      ++   P
Sbjct: 367 RSARSGSGIKSM-----LDPSNFILTPNGTGGNKSPSPVHSGGGSARYIVQDP 414

 Score = 40.4 bits (93), Expect = 0.038
 Identities = 36/109 (33%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
 Frame = -2

Query: 757 APGPQPSLIYTRNPSLVSRMRCGRTSMRARWPPPGSSEARRSRPPIGPCR---PWCGRAP 587
           AP P P     R P   SR      S     PPP SS +  S+               +P
Sbjct: 264 APPPPPPTAAPRPPPAPSR------SQPPPPPPPSSSTSNLSQNIAVQAAIRAASSASSP 317

Query: 586 AAPPPPQWRPATPGTTPSAAASHASWRPHPGSLPSPPRG*RSSSAPRRP 440
           AAPPPP   P+ P  + +++ SH++  P P   P PP     SSAP  P
Sbjct: 318 AAPPPPPPPPSAPPRSTASSPSHSAPAPPP---PPPP-----SSAPVPP 358

 Score = 39.3 bits (90), Expect = 0.084
 Identities = 48/152 (31%), Positives = 55/152 (35%), Gaps = 12/152 (7%)
 Frame = -2

Query: 664 PPPGS--------SEARRSRPPIGPC---RPWCGRAPAAPPPPQWRPATPGTTPSAAASH 518
           PPPGS        S A  S PP  P     P    AP+ PP P   P T    P  A S 
Sbjct: 223 PPPGSRKPSAAIHSSAPPSAPPPPPSFAPPPPSSAAPSLPPAPPPPPPTAAPRPPPAPSR 282

Query: 517 ASWRPHPGSLPSPPRG*RSSS-APRRPWRPAPAPASPAKRTRPPPQWNRAAHLPIPTTPR 341
           +  +P P   PS      S + A +   R A + +SPA    PPP        P    PR
Sbjct: 283 S--QPPPPPPPSSSTSNLSQNIAVQAAIRAASSASSPAAPPPPPP--------PPSAPPR 332

Query: 340 RRALRRRRSRAAGRSGRRRPSR*VLPGSSPSP 245
             A     S  A        S  V P  S SP
Sbjct: 333 STASSPSHSAPAPPPPPPPSSAPVPPSLSHSP 364



EST assemble image


clone accession position
1 CM042h11_r AV389307 1 301
2 LC071e05_r AV623995 30 537
3 MX010e09_r BP086516 397 860




Chlamydomonas reinhardtii
Kazusa DNA Research Institute