KCC001357A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001357A_C01 KCC001357A_c01
cCCAATCGGCATTTTACAACTCGATGGGCCTCGTTCGGTACCGCAGTCGGCACCGCATCC
TCGCCCTCCTGCTGCCGCACAGCGTCACCCCGTGTGGGGACGTGAGCACAACTCCTGCAC
TGTAATTCCTGCTCATACCATAGCACCTCATGTATCTGAGAGCTCTCTTCATCTGCACAC
TCAACACGTACGCCCATCCGGCGCATCGCGGCCAGCAGCCTTCCCTGGGCCATGCACCCA
GTCGACCAAGCCCCGACCCACACACCATGCGCCCAGCATGGCACATGGGCACGTGACACT
TCACCTGCTTCTATAAACCTGACCTCCGGGGCCTGATTGCGACGTACACTGCATGCCACG
ATGGCTGCATGCACGCGTCAACCCACACACATGTCTACTCTACGCTCCAGTCACTGAAGC
GCTCTCGCCTGCCTGCGTCATTCGCAAAAACCCACCTCAGAGCACTTGCCGGCCGCACAC
GCATCCCGTTAGCCCGCTGCCGCACGTGCAGACGGCTAGCAGCCAAAGGCTCGGCATGGC
CCTTGCGCTGAGTCAAAAGTCAACAAAGTGTCTGTAAAGCggctcccgtaatgactcccc
tacatacatgaacccccatatgcgcatgtcgtcgaaactccagccccgagcactagctcg


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001357A_C01 KCC001357A_c01
         (660 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC87289.1| unnamed protein product [Homo sapiens]                 43  0.004
sp|Q99946|NG5_HUMAN Protein NG5                                        40  0.031
ref|NP_103728.1| serine/threonine kinase [Mesorhizobium loti] gi...    40  0.040
dbj|BAB03062.1| contains similarity to cell wall-plasma membrane...    39  0.090
gb|AAA67703.1| protease gi|1095743|prf||2109370A protease              38  0.12

>dbj|BAC87289.1| unnamed protein product [Homo sapiens]
          Length = 377

 Score = 43.1 bits (100), Expect = 0.004
 Identities = 47/171 (27%), Positives = 60/171 (34%), Gaps = 16/171 (9%)
 Frame = +2

Query: 41  PQSAPHPRPPAAAQRHPVWGREHN-SCTVIPAH--TIAPHVSESSLHLHTQHVRPSGASR 211
           P S  H   PA    H    R HN +C  +  H  T  P  +  + H HT H  PS    
Sbjct: 201 PGSHTHVHTPA----HTPHTRSHNHTCLYLLTHACTNTPAYTSYTAHPHTLHCSPSHTHA 256

Query: 212 PAAFPGPCTQSTKPR------------PTHHAPSMAHGHVTLHLLL*T*PPGPDCDVHCM 355
           PA      T    P             PTH + ++A  H+  H+   + P    C     
Sbjct: 257 PAH-----THMLTPHHSLTHIHSHMIAPTHTSHTLARTHLLTHISRYSAPHAHTCSHTSH 311

Query: 356 PRWLHARVNPHTCLLYAPVTEALSPACVIRKNPPQSTCRP-HTHPVSPLPH 505
              LH R   HTC  + P T       +   +    TC P HTH  S   H
Sbjct: 312 ITQLHTRPCSHTC-AHTPHTIHSRTHPLTHAHVCSHTCSPIHTHTSSHTSH 361

>sp|Q99946|NG5_HUMAN Protein NG5
          Length = 306

 Score = 40.0 bits (92), Expect = 0.031
 Identities = 30/94 (31%), Positives = 35/94 (36%), Gaps = 15/94 (15%)
 Frame = +2

Query: 38  VPQSAPHPRPPAAAQRHPVWGREHNSCTVIPAHTIAP--HVSESSLHLHTQHVRPSG--- 202
           +P S PH  PP      P            PA   AP    + SS H H  H   SG   
Sbjct: 8   LPDSVPHTSPPPYNAPQP------------PAEPPAPPPQAAPSSHHHHHHHYHQSGTAT 55

Query: 203 ----------ASRPAAFPGPCTQSTKPRPTHHAP 274
                     +S   A  GP + +T PRP HHAP
Sbjct: 56  LPRLGAGGLASSAATAQRGPSSSATLPRPPHHAP 89

>ref|NP_103728.1| serine/threonine kinase [Mesorhizobium loti]
           gi|14022906|dbj|BAB49514.1| serine/threonine kinase
           [Mesorhizobium loti]
          Length = 857

 Score = 39.7 bits (91), Expect = 0.040
 Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
 Frame = +2

Query: 65  PPAAAQRHPVWGREHNSCTVIPAHTIAPHVSESSLHLHTQHVRPSGASRPAAFPGPCTQS 244
           PPA+       G      TV+      P  S    H   +HVRP+  S+P   P P   S
Sbjct: 292 PPASYGPRDRSGLPRAGWTVLAESGPQPSTSAGEKHF-VEHVRPAHLSQPRPAPAPAPAS 350

Query: 245 ----TKPRPTHHAPSMAHGHVTLHLLL 313
               T PR +   P++A G VTL +LL
Sbjct: 351 TPMPTAPRKSSRMPAVAGGLVTLAVLL 377

>dbj|BAB03062.1| contains similarity to cell wall-plasma membrane linker
           protein~gene_id:MKA23.5 [Arabidopsis thaliana]
          Length = 1480

 Score = 38.5 bits (88), Expect = 0.090
 Identities = 41/159 (25%), Positives = 57/159 (35%), Gaps = 3/159 (1%)
 Frame = +2

Query: 41  PQSAPHPRPPAAAQRHPVWGREHNSCTVIPAHTIAPHVSESSLHLHTQHVRPSGASRPAA 220
           P+  PHP+PP   + HP     H      P H      ++   H     ++P    +P  
Sbjct: 68  PKRHPHPKPP-TVKPHP-----HPKPPTKP-HPHPKPPTKPHPHPKPPTIKPPPHPKPRP 120

Query: 221 FPGPCTQSTKPRPTHHAPSMAHGHVTLHLLL*T*PPGPDCDVHCMPRWLHARVNPHTCLL 400
            P P   + KP P    P+  H H           P P    H  P+    +  P    +
Sbjct: 121 HPKP--PNVKPHPHPKPPTKPHPH-----------PKPPTKHHPHPKPPTIKPPPKPPSV 167

Query: 401 YAPVTEALSPACVIRKNPPQSTCRPHTH---PVSPLPHV 508
             P +    P      NPP ST +P TH   P +P P V
Sbjct: 168 KPPPSTPKPPT----TNPPPSTPQPPTHKPPPCTPTPPV 202

>gb|AAA67703.1| protease gi|1095743|prf||2109370A protease
          Length = 636

 Score = 38.1 bits (87), Expect = 0.12
 Identities = 32/101 (31%), Positives = 42/101 (40%), Gaps = 6/101 (5%)
 Frame = +2

Query: 50  APH-PRPPAAAQRHPVWGREHNSCTVIPAHTIAPHVSESSLHLHTQHVRP-----SGASR 211
           AP+ P PP     HP      ++ T  PA    P     +++L   H+ P     SGA  
Sbjct: 502 APYGPYPPVGPYHHP------HADTETPAQP--PRYPAEAVYLPPPHIAPPGPPLSGAVP 553

Query: 212 PAAFPGPCTQSTKPRPTHHAPSMAHGHVTLHLLL*T*PPGP 334
           P ++P P   +  P P  H PS AH H          PPGP
Sbjct: 554 PPSYP-PVAVTPGPAPPLHQPSPAHAHPP------PPPPGP 587



EST assemble image


clone accession position
1 CM096f03_r AV392734 1 519
2 CM040f04_r AV389208 73 527
3 MXL066e09_r BP096890 248 739




Chlamydomonas reinhardtii
Kazusa DNA Research Institute