KCC001346A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001346A_C01 KCC001346A_c01
cgcgacggcgaggagggtgaggagggcgtcgacaggtcccgccggtccatcgacggccgg
ggcaagggcagcgggcgcaaGTCCGTAGACGGCGTCCGTGCCTCCATGGACGGGCCAGGG
AAGGGCAGCGGCAAAGGCGGCAAGGCCGCCGCTGAGCAGGAGGATGACGCGTCCAGTGTA
GCCTCCAGCATGAATTAGAACGGGGAAGGGCTGTGAGCTCGTATGGGACTGCCAGCATCC
AGCGCGCTGAGCTTGTATAGCGCGGCAATGTCATGGCCGTGGCGTGACACTCGGAGCGAA
GGGCTCTGGAAGGACGAACCCGGAACTGAAATGGAAAAGGGTGTTGTACTTTCTTGGCTT
GGGAGATTGTATTCGTCAGCAAGGGCGCTGGGTGGCCACGAAGGTGTACATGCAAGGTGT
GAGCGCAGGGTGCTGGACAGCGAGGGGGTTAAGGCTTTGCCTGCGTCACCCATTTATCCG
GAGGTGTAAGATGCTGTGTGAGCGTCAATGATATGCTGGTATCACGCTTGGCGTAATGAG
AGCGCCGCCGCCTCTGGGCCTCAACAGCGTGCGACGCCGAAGAACGAAGTGAGCTGCGGA
TGGCTCTTTGGGCGGCCGCAAGCCGTATGCTATTGATTAGGAGTTAAAGTTGCGGGCCAT
CACGCCTGCATCAATGGCCGTAGTGCTTACGTACGCCTGCCTTAGGCCCCTGCGTAAGGG
TGCGTGCAGGCGTCATCAGGCGCACTAGAGATGTCACGATACGATGGTCGGTGCCCCTGT
TTAGTTGAACACAGGCTGAAGCCCAGCTGGAGTCTGTGCGCGTGTATCTTCGGCATGTAT
GC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001346A_C01 KCC001346A_c01
         (842 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAD66637.1| phytocyanin protein, PUP2 [Arabidopsis thaliana]       45  0.001
ref|NP_200198.1| hypothetical protein [Arabidopsis thaliana] gi|...    45  0.001
pir||S50755 hypothetical protein VSP-3 - Chlamydomonas reinhardt...    41  0.022
ref|XP_300853.1| hypothetical protein XP_300853 [Homo sapiens]         41  0.028
ref|XP_325348.1| predicted protein [Neurospora crassa] gi|289219...    41  0.028

>emb|CAD66637.1| phytocyanin protein, PUP2 [Arabidopsis thaliana]
          Length = 370

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 50/153 (32%), Positives = 61/153 (39%), Gaps = 7/153 (4%)
 Frame = -1

Query: 449 TPSLS-STLRSHLACTPSWPPSALADEYNLPSQESTTPFSISVPGSSFQSPSLRVSRHGH 273
           TP+LS S   SH   TPS            PS +S +P S S   S   +PS       H
Sbjct: 191 TPALSPSHATSHSPATPS------------PSPKSPSPVSHSPSHSPAHTPS-------H 231

Query: 272 DIAALYKLSALDAGSPIRAHSPSPF*FMLEATLDASSSCSAAALPPLPLPFPGPSMEART 93
             A     S   A S   AH+PS       +   A S   + A P  P P   P+    T
Sbjct: 232 SPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSXSHSPATPKSPSPSSSPAQSPAT 291

Query: 92  PS--TDLRPLPLPRPSMDR----RDLSTPSSPS 12
           PS  T   P P+  PS D+     D STP +PS
Sbjct: 292 PSPMTPQSPSPVSSPSPDQSAAPSDQSTPLAPS 324

>ref|NP_200198.1| hypothetical protein [Arabidopsis thaliana]
           gi|10177249|dbj|BAB10717.1| contains similarity to
           phytocyanin/early nodulin-like protein~gene_id:K19P17.3
           [Arabidopsis thaliana]
          Length = 370

 Score = 45.1 bits (105), Expect = 0.001
 Identities = 50/153 (32%), Positives = 61/153 (39%), Gaps = 7/153 (4%)
 Frame = -1

Query: 449 TPSLS-STLRSHLACTPSWPPSALADEYNLPSQESTTPFSISVPGSSFQSPSLRVSRHGH 273
           TP+LS S   SH   TPS            PS +S +P S S   S   +PS       H
Sbjct: 191 TPALSPSHATSHSPATPS------------PSPKSPSPVSHSPSHSPAHTPS-------H 231

Query: 272 DIAALYKLSALDAGSPIRAHSPSPF*FMLEATLDASSSCSAAALPPLPLPFPGPSMEART 93
             A     S   A S   AH+PS       +   A S   + A P  P P   P+    T
Sbjct: 232 SPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSPSHSPATPKSPSPSSSPAQSPAT 291

Query: 92  PS--TDLRPLPLPRPSMDR----RDLSTPSSPS 12
           PS  T   P P+  PS D+     D STP +PS
Sbjct: 292 PSPMTPQSPSPVSSPSPDQSAAPSDQSTPLAPS 324

>pir||S50755 hypothetical protein VSP-3 - Chlamydomonas reinhardtii
           gi|530876|gb|AAB53953.1| amino acid feature: Rod protein
           domain, aa 266 .. 468; amino acid feature: globular
           protein domain, aa 32 .. 265
          Length = 473

 Score = 41.2 bits (95), Expect = 0.022
 Identities = 43/141 (30%), Positives = 57/141 (39%), Gaps = 6/141 (4%)
 Frame = -1

Query: 407 TPSWPPSALADEYNLPSQESTTPFSISVPGSSFQSPSLRVSRHGHDIAALYKLSALDAGS 228
           +P   PS        PS +++   S S   S   SPS + S            S   + S
Sbjct: 276 SPKVSPSPSPKASPSPSPKASPSPSPSPKASPSPSPSPKASPSPSP-------SPSPSPS 328

Query: 227 PIRAHSPSPF*FMLEATLDASS-----SCSAAALPPLPLPFPGPSME-ARTPSTDLRPLP 66
           P  + SPSP   +  A+  + S     S S    PPLP P P PS   + +PS   +P P
Sbjct: 329 PKASPSPSPSPSVQPASKPSPSPSPSPSPSPRPSPPLPSPSPSPSPSPSPSPSPSPKPSP 388

Query: 65  LPRPSMDRRDLSTPSSPSSPS 3
            P PS       +PS   SPS
Sbjct: 389 SPSPSPSPSPKPSPSPSPSPS 409

 Score = 38.5 bits (88), Expect = 0.14
 Identities = 42/140 (30%), Positives = 51/140 (36%), Gaps = 5/140 (3%)
 Frame = -1

Query: 407 TPSWPPSALADEYNLPSQESTTPFSISVPGSSFQSPSLRVSRHGHDIAALYKLSALDAGS 228
           +PS  P A       PS       S S   S   SPS + S             A  + S
Sbjct: 266 SPSPSPKASPSPKVSPSPSPKASPSPSPKASPSPSPSPKASPSPSPSP-----KASPSPS 320

Query: 227 PIRAHSPSPF*FMLEATLDASSSCSAAALP-----PLPLPFPGPSMEARTPSTDLRPLPL 63
           P  + SPSP       +   S S   A+ P     P P P P PS    +PS    P P 
Sbjct: 321 PSPSPSPSP---KASPSPSPSPSVQPASKPSPSPSPSPSPSPRPSPPLPSPSPSPSPSPS 377

Query: 62  PRPSMDRRDLSTPSSPSSPS 3
           P PS   +   +PS   SPS
Sbjct: 378 PSPSPSPKPSPSPSPSPSPS 397

 Score = 37.7 bits (86), Expect = 0.24
 Identities = 46/150 (30%), Positives = 57/150 (37%), Gaps = 1/150 (0%)
 Frame = -1

Query: 449 TPSLSSTLRSHLACTPSWPPSALADEYNLPSQESTTPFSISVPGSSFQSPSLRVSRHGHD 270
           +PS S       + +PS  PS  A     PS         S   S   SPS R S     
Sbjct: 308 SPSPSPKASPSPSPSPSPSPSPKASPSPSPSPSVQPASKPSPSPSPSPSPSPRPS----- 362

Query: 269 IAALYKLSALDAGSPIRAHSPSPF*FMLEATLDASSSCSAAALP-PLPLPFPGPSMEART 93
              L   S   + SP  + SPSP           S S S +  P P P P P PS  + +
Sbjct: 363 -PPLPSPSPSPSPSPSPSPSPSP---------KPSPSPSPSPSPSPKPSPSPSPS-PSPS 411

Query: 92  PSTDLRPLPLPRPSMDRRDLSTPSSPSSPS 3
           PS  + P P P PS      ++PS    PS
Sbjct: 412 PSPKVSPSPSPSPSPSPSPKASPSPAKKPS 441

>ref|XP_300853.1| hypothetical protein XP_300853 [Homo sapiens]
          Length = 252

 Score = 40.8 bits (94), Expect = 0.028
 Identities = 47/175 (26%), Positives = 70/175 (39%), Gaps = 10/175 (5%)
 Frame = -1

Query: 497 TASYTSG*MGDAGKALTPSLSSTLRSHLACTPSWPPSALADEYNLPSQESTTPFSISVPG 318
           ++S  S     +  + +PS SS   SH + +PS   S  +   +  S  S+   S S   
Sbjct: 52  SSSIPSSSSSSSSPSSSPSSSSPSSSHSSSSPSSSSSTSSPSSSSSSSSSSPSSSNSSSS 111

Query: 317 SSFQSPSLRVSRHGHDIAALYKLSALDAGSPIRAHSPSPF*FMLEATLDASSSCSAAALP 138
           SS  SPS   S      ++    S+    S   + S SP       +  +SSS S+++ P
Sbjct: 112 SSSSSPSSSSSSSSSSPSS----SSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSSSSP 167

Query: 137 PLPLPF----------PGPSMEARTPSTDLRPLPLPRPSMDRRDLSTPSSPSSPS 3
               P             PS  + +PS+     P PR S      S+ SSPSS S
Sbjct: 168 SSSSPSSSGSSPSSSNSSPSSSSSSPSSS-SSSPSPRSSSPSSSSSSTSSPSSSS 221

>ref|XP_325348.1| predicted protein [Neurospora crassa] gi|28921947|gb|EAA31219.1|
           predicted protein [Neurospora crassa]
          Length = 656

 Score = 40.8 bits (94), Expect = 0.028
 Identities = 34/131 (25%), Positives = 56/131 (41%), Gaps = 1/131 (0%)
 Frame = -1

Query: 443 SLSSTLRSHLACTPSWPPSALADEYNLPSQESTTPFSISVPGSSFQSPSLRVSRHGHDIA 264
           S++S++R     + +  PS  A  Y+L        +  S P  +   P L + ++ H ++
Sbjct: 113 SVTSSIRKDSRASDTRRPSQSAASYSL--------YPPSSPPITKPLPPLPLGKNSHRVS 164

Query: 263 ALYKLSALDAGSPIRAHSPSPF*FMLEATLDASSSCSAAALPPLPLP-FPGPSMEARTPS 87
           +   +   DA S   A   S      +AT       S  A+ PL  P FP P +   +  
Sbjct: 165 SQGSIDGSDAASSYSASRLSQASRSSKATSSGPDPMSNDAIAPLSSPLFPSPPLHQFSTP 224

Query: 86  TDLRPLPLPRP 54
           ++ RP P PRP
Sbjct: 225 SEERPKPKPRP 235



EST assemble image


clone accession position
1 CM039f12_r AV388932 1 562
2 CM100h04_r AV392810 315 842




Chlamydomonas reinhardtii
Kazusa DNA Research Institute