Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001344A_C01 KCC001344A_c01
(558 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM83406.1| POLR3K [Sphoeroides nephelus] 85 2e-26
ref|NP_080177.1| RIKEN cDNA 1500004O14 [Mus musculus] gi|1283687... 75 1e-23
gb|AAQ86835.1| RNA polymerase III [Ixodes scapularis] 80 1e-23
gb|AAK61210.1|AE006462_2 RNA polymerase III subunit CII [Homo sa... 76 4e-23
ref|NP_057394.1| DNA directed RNA polymerase III polypeptide K; ... 76 4e-23
>gb|AAM83406.1| POLR3K [Sphoeroides nephelus]
Length = 108
Score = 84.7 bits (208), Expect(2) = 2e-26
Identities = 38/76 (50%), Positives = 51/76 (67%)
Frame = +2
Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
M+ +CPTC N+L+VE E K +R+ C CPYV+NI +K++ K+VDDVLGG A
Sbjct: 1 MLLFCPTCGNVLIVE--EGQKCMRFACNTCPYVHNITRKVNNRKYPKLKEVDDVLGGAAA 58
Query: 236 WKNVAKTDATCPKCSY 283
W+NV T TCPKC +
Sbjct: 59 WENVDSTAETCPKCEH 74
Score = 55.8 bits (133), Expect(2) = 2e-26
Identities = 25/39 (64%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Frame = +3
Query: 270 PSAATIKAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 380
P +AYFM+IQTRSADEP T F+KC QC HRWRE
Sbjct: 70 PKCEHPRAYFMQIQTRSADEPMTTFYKCCNAQCGHRWRE 108
>ref|NP_080177.1| RIKEN cDNA 1500004O14 [Mus musculus] gi|12836878|dbj|BAB23846.1|
unnamed protein product [Mus musculus]
gi|12846620|dbj|BAB27239.1| unnamed protein product [Mus
musculus] gi|19484005|gb|AAH25898.1| RIKEN cDNA
1500004O14 [Mus musculus] gi|26327027|dbj|BAC27257.1|
unnamed protein product [Mus musculus]
Length = 108
Score = 75.1 bits (183), Expect(2) = 1e-23
Identities = 35/76 (46%), Positives = 47/76 (61%)
Frame = +2
Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
M+ +CP C N L+VE E + R+ C CPYV+NI +K++ K+VDDVLGG A
Sbjct: 1 MLLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAA 58
Query: 236 WKNVAKTDATCPKCSY 283
W+NV T CPKC +
Sbjct: 59 WENVDSTAEPCPKCEH 74
Score = 56.6 bits (135), Expect(2) = 1e-23
Identities = 24/41 (58%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Frame = +3
Query: 264 PAPSAATIKAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 380
P P +AYFM++QTRSADEP T F+KC QC HRWR+
Sbjct: 68 PCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gb|AAQ86835.1| RNA polymerase III [Ixodes scapularis]
Length = 108
Score = 80.1 bits (196), Expect(2) = 1e-23
Identities = 37/78 (47%), Positives = 50/78 (63%)
Frame = +2
Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
M+ +CPTCAN+L+VE + + R+ C CPYV+NI K+S K VDDVLGG A
Sbjct: 1 MLLFCPTCANILIVE--QGLECFRFACNTCPYVHNIKAKMSNRKYPRLKDVDDVLGGAAA 58
Query: 236 WKNVAKTDATCPKCSYHQ 289
W+NV T+ CPKC + +
Sbjct: 59 WENVDSTEEKCPKCGHER 76
Score = 51.2 bits (121), Expect(2) = 1e-23
Identities = 22/39 (56%), Positives = 27/39 (68%), Gaps = 2/39 (5%)
Frame = +3
Query: 270 PSAATIKAYFMEIQTRSADEPATLFFKCVQ--CAHRWRE 380
P +AYFM+IQTRSADEP T F+KC C H+WR+
Sbjct: 70 PKCGHERAYFMQIQTRSADEPMTTFYKCCNQLCGHQWRD 108
>gb|AAK61210.1|AE006462_2 RNA polymerase III subunit CII [Homo sapiens]
Length = 108
Score = 75.9 bits (185), Expect(2) = 4e-23
Identities = 35/76 (46%), Positives = 48/76 (63%)
Frame = +2
Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
M+ +CP C N L+VE E + R+ C CPYV+NI +K++ K+VDDVLGG A
Sbjct: 1 MLLFCPGCGNGLIVE--EGQRCHRFSCNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAA 58
Query: 236 WKNVAKTDATCPKCSY 283
W+NV T +CPKC +
Sbjct: 59 WENVDSTAESCPKCEH 74
Score = 53.9 bits (128), Expect(2) = 4e-23
Identities = 23/39 (58%), Positives = 28/39 (70%), Gaps = 2/39 (5%)
Frame = +3
Query: 270 PSAATIKAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 380
P +AYFM++QTRSADEP T F+KC QC HRWR+
Sbjct: 70 PKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>ref|NP_057394.1| DNA directed RNA polymerase III polypeptide K; RNA polymerase III
subunit (hRPC11); polymerase (RNA) III (DNA directed)
polypeptide K (12.3 kDa); polymerase (RNA) III (DNA
directed) polypeptide K (12.3 kD); My010 protein [Homo
sapiens] gi|17380294|sp|Q9Y2Y1|RPCZ_HUMAN DNA-directed
RNA polymerases III 12.5 kDa polypeptide (RNA polymerase
III C11 subunit) (HsC11p) (hRPC11) (My010 protein)
gi|4877775|gb|AAD31424.1|AF126531_1 putative
DNA-directed RNA polymerase III C11 subunit [Homo
sapiens] gi|6580760|gb|AAF18268.1|AF051316_1 RNA
polymerase III subunit [Homo sapiens]
gi|12001960|gb|AAG43123.1|AF060223_1 My010 protein [Homo
sapiens] gi|15080355|gb|AAH11932.1|AAH11932 Similar to
polymerase (RNA) III (DNA directed) polypeptide K (12.3
kDa) [Homo sapiens]
Length = 108
Score = 75.9 bits (185), Expect(2) = 4e-23
Identities = 35/76 (46%), Positives = 48/76 (63%)
Frame = +2
Query: 56 MITYCPTCANMLLVELTEYSKELRYFCQCCPYVYNIDKKISKMAPLARKQVDDVLGGEDA 235
M+ +CP C N L+VE E + R+ C CPYV+NI +K++ K+VDDVLGG A
Sbjct: 1 MLLFCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAA 58
Query: 236 WKNVAKTDATCPKCSY 283
W+NV T +CPKC +
Sbjct: 59 WENVDSTAESCPKCEH 74
Score = 53.9 bits (128), Expect(2) = 4e-23
Identities = 23/39 (58%), Positives = 28/39 (70%), Gaps = 2/39 (5%)
Frame = +3
Query: 270 PSAATIKAYFMEIQTRSADEPATLFFKC--VQCAHRWRE 380
P +AYFM++QTRSADEP T F+KC QC HRWR+
Sbjct: 70 PKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
