Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001324A_C01 KCC001324A_c01
(303 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_352404.1| similar to contains similarity to cell wall-pla... 43 0.001
ref|NP_064204.1| pR104 [Rat cytomegalovirus] gi|9800319|gb|AAF99... 42 0.002
ref|XP_296992.1| hypothetical protein XP_296992 [Homo sapiens] 39 0.015
ref|ZP_00012455.1| hypothetical protein [Rhodopseudomonas palust... 39 0.026
gb|AAL75972.1|AF466203_1 putative RIRE2 orf3 [Zea mays] 39 0.026
>ref|XP_352404.1| similar to contains similarity to cell wall-plasma membrane linker
protein~gene_id:MKA23.5 [Homo sapiens]
Length = 1000
Score = 43.1 bits (100), Expect = 0.001
Identities = 29/81 (35%), Positives = 35/81 (42%), Gaps = 9/81 (11%)
Frame = +2
Query: 41 PSATGPRGSRTQPPSLAKCQRAAPSTPLQQAPHVRHGARRVAAAAAPAPTRPHRHLAV-- 214
P+A PR R P A S P +Q PH H V A++P P RPHR +V
Sbjct: 552 PTAPSPRPQRPHRPDSVLTAPTASSRP-RQRPHGPHSVLTVPTASSPRPQRPHRPDSVLT 610
Query: 215 -------PPSRPRTDFPGAPH 256
PP RP+ P PH
Sbjct: 611 APTASSSPPQRPQR--PQRPH 629
Score = 40.0 bits (92), Expect = 0.009
Identities = 25/71 (35%), Positives = 32/71 (44%), Gaps = 9/71 (12%)
Frame = +2
Query: 44 SATGPRGSRTQPPSLAKCQRAAPSTPLQQAPHVRHGARRVAAAAAPAPTRPHRHLAV--- 214
+A+ PR R P + A S P +Q PH H V A++P P RPHR +V
Sbjct: 662 TASSPRPQRPHRPDSSLAASTASSRP-RQRPHGPHSVLTVPTASSPRPQRPHRPDSVLTV 720
Query: 215 ------PPSRP 229
PP RP
Sbjct: 721 PTASSPPPQRP 731
Score = 37.0 bits (84), Expect = 0.076
Identities = 23/77 (29%), Positives = 32/77 (40%)
Frame = +2
Query: 41 PSATGPRGSRTQPPSLAKCQRAAPSTPLQQAPHVRHGARRVAAAAAPAPTRPHRHLAVPP 220
P+A PR R P A APS P ++ PH A++P P RPH +V
Sbjct: 154 PTAPSPRPQRPHRPHSALIGSTAPSPP-RERPHRPDSVLTAPTASSPPPQRPHSPDSVLT 212
Query: 221 SRPRTDFPGAPHHNTHT 271
+ + P H H+
Sbjct: 213 ASTASSPPRQCPHGVHS 229
Score = 36.2 bits (82), Expect = 0.13
Identities = 23/77 (29%), Positives = 31/77 (39%)
Frame = +2
Query: 41 PSATGPRGSRTQPPSLAKCQRAAPSTPLQQAPHVRHGARRVAAAAAPAPTRPHRHLAVPP 220
P+A+ P R P A S P Q+ PH H A +P P RPHR +V
Sbjct: 372 PTASSPPPQRPHRPDSVLTAPTASSPPPQR-PHGVHSVLTAPTAPSPRPQRPHRPHSVLT 430
Query: 221 SRPRTDFPGAPHHNTHT 271
+ + P H H+
Sbjct: 431 APTASSPPPQRPHGVHS 447
Score = 35.8 bits (81), Expect = 0.17
Identities = 23/73 (31%), Positives = 31/73 (41%), Gaps = 1/73 (1%)
Frame = +2
Query: 41 PSATGPRGSRTQPPSLAKCQRAAPSTPLQQAPHVRHGARRVAAAAAPAPTRPHR-HLAVP 217
P+A PR R P A S P Q+ PH H + A++P+P PHR H +
Sbjct: 412 PTAPSPRPQRPHRPHSVLTAPTASSPPPQR-PHGVHSVLTASTASSPSPQCPHRVHSVLT 470
Query: 218 PSRPRTDFPGAPH 256
+ P PH
Sbjct: 471 APTAPSPRPQRPH 483
Score = 35.4 bits (80), Expect = 0.22
Identities = 24/73 (32%), Positives = 29/73 (38%), Gaps = 1/73 (1%)
Frame = +2
Query: 41 PSATGPRGSRTQPPSLAKCQRAAPSTPLQQAPHVRHGARRVAAAAAPAPTRPHR-HLAVP 217
P+A PR R APS P Q PH H V A++ P RPHR H +
Sbjct: 472 PTAPSPRPQRPHRVHSVLTALTAPS-PRPQRPHRVHSVLTVPTASSRRPQRPHRVHSVLT 530
Query: 218 PSRPRTDFPGAPH 256
+ P PH
Sbjct: 531 APTASSQRPQRPH 543
Score = 34.3 bits (77), Expect = 0.49
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Frame = +2
Query: 41 PSATGPRGSRTQPPSLAKCQRAAPSTPLQQAPHVRHGARRVAAAAAPAPTRPHRHLAV-- 214
P+A+ PR R APS P Q PH H A + A +P RPHR +V
Sbjct: 134 PTASSPRPQRPHGVHSLLIAPTAPS-PRPQRPHRPHSALIGSTAPSPPRERPHRPDSVLT 192
Query: 215 -------PPSRPRT 235
PP RP +
Sbjct: 193 APTASSPPPQRPHS 206
Score = 34.3 bits (77), Expect = 0.49
Identities = 21/63 (33%), Positives = 26/63 (40%)
Frame = +2
Query: 41 PSATGPRGSRTQPPSLAKCQRAAPSTPLQQAPHVRHGARRVAAAAAPAPTRPHRHLAVPP 220
P+A+ P R P A S P +Q PH H V ++P P RP R P
Sbjct: 194 PTASSPPPQRPHSPDSVLTASTASSPP-RQCPHGVHSVLTVPTVSSPRPQRPQR-----P 247
Query: 221 SRP 229
RP
Sbjct: 248 QRP 250
Score = 33.9 bits (76), Expect = 0.64
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Frame = +2
Query: 41 PSATGPRGSRTQPPSLAKCQRAAPSTPLQQAPHVRHGARRVAA------AAAPAPTRPHR 202
P+A+ P R P A S+P Q H H V + A++P P RPHR
Sbjct: 260 PTASSPPRQRPHRPDSVLTASTA-SSPSPQCRHRVHSVLNVRSVLTAPTASSPRPQRPHR 318
Query: 203 -HLAVPPSRPRTDFPGAPHH 259
H A+ + P PHH
Sbjct: 319 VHSALTAPTASSPPPQRPHH 338
Score = 33.9 bits (76), Expect = 0.64
Identities = 25/69 (36%), Positives = 29/69 (41%), Gaps = 5/69 (7%)
Frame = +2
Query: 41 PSATGPRGSRTQPPSLAKCQRAAPSTPLQQAPHVRHGARRVAAAAAPAPTRPHR-HLAV- 214
P+A PR P A S+P Q PH H A +P P RPHR H A+
Sbjct: 114 PTAPSPRPQHLHRPHSVLTAPTA-SSPRPQRPHGVHSLLIAPTAPSPRPQRPHRPHSALI 172
Query: 215 ---PPSRPR 232
PS PR
Sbjct: 173 GSTAPSPPR 181
Score = 33.1 bits (74), Expect = 1.1
Identities = 25/85 (29%), Positives = 34/85 (39%), Gaps = 13/85 (15%)
Frame = +2
Query: 41 PSATGPRGSRTQPPSLAKCQRAAPS--------TPLQQAPHVRHGARRVAAAAAPAPTRP 196
P+A+ R Q P C + S +P Q PH + + A++P P RP
Sbjct: 612 PTASSSPPQRPQRPQRPHCPDSVHSVLTVPTAPSPRPQRPHRPDSSLAASTASSPRPQRP 671
Query: 197 HR-----HLAVPPSRPRTDFPGAPH 256
HR + SRPR P PH
Sbjct: 672 HRPDSSLAASTASSRPR-QRPHGPH 695
Score = 32.0 bits (71), Expect = 2.4
Identities = 17/46 (36%), Positives = 20/46 (42%), Gaps = 6/46 (13%)
Frame = +2
Query: 113 STPLQQAPHVRHGARRVAAAAAPAPTRPHR------HLAVPPSRPR 232
S+P Q PH H A +P P RPHR L P RP+
Sbjct: 455 SSPSPQCPHRVHSVLTAPTAPSPRPQRPHRVHSVLTALTAPSPRPQ 500
Score = 32.0 bits (71), Expect = 2.4
Identities = 25/70 (35%), Positives = 28/70 (39%), Gaps = 7/70 (10%)
Frame = +2
Query: 68 RTQPPSLAKCQRAAPSTPLQ--QAPHVRHGARRVAAAAAPAPTRPHRHLAV-----PPSR 226
R Q P AP+ Q Q PH H A +P P RPHR +V SR
Sbjct: 518 RPQRPHRVHSVLTAPTASSQRPQRPHRVHSVLTAPTAPSPRPQRPHRPDSVLTAPTASSR 577
Query: 227 PRTDFPGAPH 256
PR P PH
Sbjct: 578 PR-QRPHGPH 586
Score = 32.0 bits (71), Expect = 2.4
Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 3/96 (3%)
Frame = +2
Query: 2 SRIDAYSAQGWQRPSATGPRGSRTQPPSLAKCQRAAPSTPLQQAPHVRHGARRVAAAAAP 181
S + A +A R GP T P + S+P Q PH V A++P
Sbjct: 676 SSLAASTASSRPRQRPHGPHSVLTVPTA---------SSPRPQRPHRPDSVLTVPTASSP 726
Query: 182 APTRPHR---HLAVPPSRPRTDFPGAPHHNTHTGCC 280
P RPHR L P + + P TH C
Sbjct: 727 PPQRPHRVHSALTAPTASSVSTAFSPPPQCTHCPQC 762
Score = 31.6 bits (70), Expect = 3.2
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 113 STPLQQAPHVRHGARRVAAAAAPAPTRPHRHLAVPPSRPRTDF-PGAPH 256
S+P Q PH H A A++P P RPH +V + + P PH
Sbjct: 309 SSPRPQRPHRVHSALTAPTASSPPPQRPHHPDSVLTASTASSLSPQCPH 357
>ref|NP_064204.1| pR104 [Rat cytomegalovirus] gi|9800319|gb|AAF99193.1|AF232689_90
pR104 [rat cytomegalovirus Maastricht]
Length = 737
Score = 42.0 bits (97), Expect = 0.002
Identities = 33/93 (35%), Positives = 40/93 (42%), Gaps = 10/93 (10%)
Frame = +1
Query: 34 AAAVCHGPTRQPHAAALAREMSKSCSFHSTAAGAARAARGAPRRGRRCARPHPPAQAPGR 213
AA PT +P AA+ R ++ + A G AR G PRR RR P P GR
Sbjct: 610 AATTSEAPTPRPGGAAVPRPVATTDGRRPPAPGPARIRDGRPRRARR--PPGGPTTPYGR 667
Query: 214 P-------AVPPEDGLSGGTTPQ---HTHGLLP 282
P A DG + TP+ HT GL P
Sbjct: 668 PGGALGPMAPTTGDGTTRDRTPRAWAHTAGLFP 700
>ref|XP_296992.1| hypothetical protein XP_296992 [Homo sapiens]
Length = 105
Score = 39.3 bits (90), Expect = 0.015
Identities = 29/88 (32%), Positives = 36/88 (39%), Gaps = 5/88 (5%)
Frame = -2
Query: 293 PMLRGSSPCVCCGVVPPESPSSGGTAGRPGACAGGWGRAQRRPRR---GAPRAARAAP-- 129
P RGS P +PP S G + R A GGWGRA + PR PR R P
Sbjct: 4 PRWRGSVP-EAAPQMPPSSAFLSGPSARVSAMEGGWGRAGKAPRTPPLPPPRGERRRPLR 62
Query: 128 AAVEWKEQLFDISRARAAACGCRVGPWQ 45
W+ +R+ A CG W+
Sbjct: 63 CGPSWQR-----ARSPPAPCGASGPRWR 85
>ref|ZP_00012455.1| hypothetical protein [Rhodopseudomonas palustris]
Length = 829
Score = 38.5 bits (88), Expect = 0.026
Identities = 31/90 (34%), Positives = 39/90 (42%), Gaps = 18/90 (20%)
Frame = +2
Query: 38 RPSATGPRGS--RTQPPSLAKCQRAAPST-------PLQQAPHV------RHGARRVAAA 172
RP+ P + R PP+ + QR AP T P+ AP V +H A R+A
Sbjct: 726 RPAGPPPAAAVDRRPPPAAPRIQRPAPPTVSRPVPPPMHVAPRVAPPPPPQHAAPRMAPP 785
Query: 173 AAP---APTRPHRHLAVPPSRPRTDFPGAP 253
AP AP PH PP+ PR P P
Sbjct: 786 PAPVRAAPPPPHVAPPRPPAPPRAAPPPRP 815
Score = 30.0 bits (66), Expect = 9.3
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
Frame = +1
Query: 55 PTRQPHAAALAREMSKSCSFHSTAAGAARAARGAPRRGRR--------CARPHPPA---- 198
P QP A+A + + AGAA A + P G + ARP P+
Sbjct: 596 PPSQPTGPAVAAPAGQGRPAPTAPAGAAPAVQALPVPGTKGLPPAPGVAARPGIPSVAQP 655
Query: 199 QAPGRPAVPP 228
Q PGRPA+ P
Sbjct: 656 QPPGRPALGP 665
>gb|AAL75972.1|AF466203_1 putative RIRE2 orf3 [Zea mays]
Length = 816
Score = 38.5 bits (88), Expect = 0.026
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 281 GSSPCVCCGVVPPESPSSGGTAGRPG-ACAGGWGRAQRRPRRGAPRAARAAPAAVE 117
G SP + CG P P SG T PG +G W A+ RP R +A A A E
Sbjct: 208 GLSPGLGCGQEPSSQPPSGPTPSVPGVGASGSWPEARGRPERSPDPSAGGAEVAPE 263
