KCC001309A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001309A_C01 KCC001309A_c01
gcaccaggccCTCTCCTGTAACTTCTTGTGCAAGCCACTGCGTCAATCCATATACCTTTC
ACCAAGCTGCAGACTCAAGCTTCCAAGCAAGTTTGCTTTGCCAACAGGCGGCTTTCCCAC
CGCATCCTCACCCCTACTTTACCTTCCAGACTGAAGATGCTTGCTCAGGCTCGTAGCTTT
GCCCAGCGGCCCGCCTCTTCCGCGCGTCGGTGCGTGCGACCATCTCGGGTCACCGTCCGC
GCGGTTGCCTACACGTCTGACATCTCAGAGGAGGCGTATGTATGCCTGGGCCTGGCGCAG
TGCTTTCGCAAAAGCAGCAATGGGCTGGTGCCTGTCAACGTCATCGAGCCCCTGTCCGCG
TCCTCGCTGGAGTGCCTTGCAAACGGTGCACGTACCTCTTACAAGACCGTGACGGGCGTG
ACGTTTGGCGATGCTATGCGCCGCAAGCGTGAGACGCTGCCCGAGGCTTTCCAGCAAGCG
CCCTTCTGCGAGAACTTCGAGTTCCGCTTnggaggcgctggncgcacctggtcgcgctc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001309A_C01 KCC001309A_c01
         (539 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00108657.1| hypothetical protein [Nostoc punctiforme]           66  3e-10
ref|NP_488700.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2...    65  4e-10
ref|ZP_00070993.1| hypothetical protein [Trichodesmium erythraeu...    65  6e-10
ref|NP_681630.1| ORF_ID:tll0840~hypothetical protein [Thermosyne...    61  8e-09
ref|NP_923396.1| hypothetical protein gll0450 [Gloeobacter viola...    59  3e-08

>ref|ZP_00108657.1| hypothetical protein [Nostoc punctiforme]
          Length = 154

 Score = 65.9 bits (159), Expect = 3e-10
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
 Frame = +1

Query: 241 AVAYTS--DISEEAYVCLGLAQCFRKSSNGLVPVNVIEPLSASSLECLANGARTSYKTVT 414
           A++Y +  D++ + Y+ LGLA CF K    +  + VIEP+ +++LE L  G  TSYK   
Sbjct: 4   AISYPNAPDLATDDYIVLGLATCFVKEDGEVYQIEVIEPIPSAALEALLKGIPTSYKLAH 63

Query: 415 GVTFGDAMRRKRETLPEAF-QQAPFCENFEFRXGGAGRTWSR 537
             T G  +    + LP+ F + A F E F  R   A RT+ R
Sbjct: 64  ATTLGSVLDGDSQFLPDGFPESAQFGEEFVPRVFAAARTYKR 105

>ref|NP_488700.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25332996|pir||AD2388
           hypothetical protein alr4660 [imported] - Nostoc sp.
           (strain PCC 7120) gi|17133797|dbj|BAB76359.1|
           ORF_ID:alr4660~hypothetical protein [Nostoc sp. PCC
           7120]
          Length = 154

 Score = 65.5 bits (158), Expect = 4e-10
 Identities = 35/96 (36%), Positives = 49/96 (50%), Gaps = 1/96 (1%)
 Frame = +1

Query: 253 TSDISEEAYVCLGLAQCFRKSSNGLVPVNVIEPLSASSLECLANGARTSYKTVTGVTFGD 432
           T D++ + Y+ +GLA CF K    +  V+VIEP+ ++SLE +  G  TSYK     T G 
Sbjct: 10  TGDLNADDYIVIGLATCFVKEDGEVHQVDVIEPIPSASLEAIMKGIPTSYKFACATTLGS 69

Query: 433 AMRRKRETLPEAF-QQAPFCENFEFRXGGAGRTWSR 537
            +      LP  F   A F + F  R   A RT+ R
Sbjct: 70  VLHGDEPILPAGFPDSAQFADEFASRVFAATRTYKR 105

>ref|ZP_00070993.1| hypothetical protein [Trichodesmium erythraeum IMS101]
          Length = 154

 Score = 65.1 bits (157), Expect = 6e-10
 Identities = 34/101 (33%), Positives = 53/101 (51%), Gaps = 1/101 (0%)
 Frame = +1

Query: 232 TVRAVAYTSDISEEAYVCLGLAQCFRKSSNGLVPVNVIEPLSASSLECLANGARTSYKTV 411
           T+ A     D+S   Y+ +GLA CF K    +  V ++EP+ +++LE +  G  TSY+  
Sbjct: 3   TITAYPNAPDLSASDYLVIGLATCFVKQDGEISQVKIVEPIPSAALEAIVKGIPTSYEIA 62

Query: 412 TGVTFGDAMRRKRETLPEAF-QQAPFCENFEFRXGGAGRTW 531
            G T G  +  +   LP+ F  +A F +NF  R   A RT+
Sbjct: 63  CGTTLGKVLSGETPLLPKDFPPEAQFSDNFAERAIAATRTY 103

>ref|NP_681630.1| ORF_ID:tll0840~hypothetical protein [Thermosynechococcus elongatus
           BP-1] gi|22294562|dbj|BAC08392.1|
           ORF_ID:tll0840~hypothetical protein [Thermosynechococcus
           elongatus BP-1]
          Length = 147

 Score = 61.2 bits (147), Expect = 8e-09
 Identities = 34/89 (38%), Positives = 50/89 (55%), Gaps = 2/89 (2%)
 Frame = +1

Query: 271 EAYVCLGLAQCFRKSSNGLVPVNVIEPLSASSLECLANGARTSYKTVTGVTFGDAM--RR 444
           EAYV LGLA CF +    L PV +IEP+ +++LE L +G  TSY     +T+G A   ++
Sbjct: 11  EAYVVLGLAHCFVQVEGKLQPVEIIEPIPSAALEALLHGLPTSYSEAHALTYGTAQDPQQ 70

Query: 445 KRETLPEAFQQAPFCENFEFRXGGAGRTW 531
            R+  P     A  C+++  R   A RT+
Sbjct: 71  ARQQFP---PHAHLCDDYGDRLAAAARTY 96

>ref|NP_923396.1| hypothetical protein gll0450 [Gloeobacter violaceus]
           gi|35211011|dbj|BAC88391.1| gll0450 [Gloeobacter
           violaceus]
          Length = 159

 Score = 59.3 bits (142), Expect = 3e-08
 Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
 Frame = +1

Query: 262 ISEEAYVCLGLAQCFRKSSNGLV-PVNVIEPLSASSLECLANGARTSYKTVTGVTFGDAM 438
           +S   YV +G+A C++K++ G   PV V+EP+ A++LE ++ G RTSY  +   T G  +
Sbjct: 10  LSAMDYVVVGVALCYQKNAEGKTDPVRVVEPIPATALEAMSRGNRTSYLKIYATTLGAVI 69

Query: 439 RRKRETLPEAF--QQAPFCENFEFRXGGAGRTW 531
             +R  LP     + A  C +F  R   A RT+
Sbjct: 70  VDQRPVLPTDILGEDAHVCHDFLGRTQAAARTY 102



EST assemble image


clone accession position
1 CM041f11_r AV389395 1 201
2 HC005c10_r AV632208 11 489
3 MX250f04_r BP092168 12 439
4 LC098e11_r AV625835 13 345
5 MX204h04_r BP089313 18 457
6 CM036f04_r AV388820 21 390
7 MX212d07_r BP089694 22 460
8 MX241d06_r BP091588 29 541
9 LC083a12_r AV624812 30 482
10 HC056h04_r AV636237 42 482
11 MX034e12_r BP087438 62 425




Chlamydomonas reinhardtii
Kazusa DNA Research Institute