Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001299A_C01 KCC001299A_c01
(583 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00088665.1| COG0532: Translation initiation factor 2 (IF-... 55 9e-07
ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|... 54 2e-06
ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) ... 52 6e-06
ref|NP_506551.1| putative protein family member, with at least 2... 51 1e-05
ref|NP_034903.1| methyl-CpG binding domain protein 2 [Mus muscul... 51 1e-05
>ref|ZP_00088665.1| COG0532: Translation initiation factor 2 (IF-2; GTPase)
[Azotobacter vinelandii]
Length = 771
Score = 54.7 bits (130), Expect = 9e-07
Identities = 56/152 (36%), Positives = 61/152 (39%), Gaps = 31/152 (20%)
Frame = -2
Query: 564 ADPAPAALPPPAPPPCCQRGRT--------GPAPWPARRTRLPQSAAHP----------- 442
A P PA P PAP RGR GP P P RR R + A P
Sbjct: 2 AAPRPAG-PHPAPGRPAGRGRAALRRQPVAGPGPLPGRRLRRRRRALRPGPGGRRPLQQR 60
Query: 441 -------RCRARAG*WHV-PGAAA-AGCAAGRRGLQLSAAAPAARQQWRRRWPWRAASPP 289
R RAG PG AA AG A ++G AAAPAA RRRW RAA+ P
Sbjct: 61 QRPGSGRRTGGRAGRLRACPGTAAGAGSGAAQQGAGRGAAAPAAGASARRRWQCRAAAGP 120
Query: 288 A-PAPP--PSDAPSAAGGRSPT*QQLRGCPTR 202
A P P P A GG + G P R
Sbjct: 121 AEPGQPVRPGWAERYPGGHDGLPGRSGGSPGR 152
Score = 35.0 bits (79), Expect = 0.76
Identities = 40/111 (36%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Frame = +2
Query: 263 ASDGGGAGAGGDAARHGQRRRHCWRAAGAAALS*RPRRPAAHPAAAAPGTCHQPAR---- 430
A G AGAG AA+ G R AAGA+A RR AAA P QP R
Sbjct: 78 ACPGTAAGAGSGAAQQGAGRGAAAPAAGASA-----RRRWQCRAAAGPAEPGQPVRPGWA 132
Query: 431 ----ALHRGCAALCGRRVRRAGQGAGPVRPRWQHGGGAGGGRAAGAGSARG 571
H G G R+ AG R G G GR GAG RG
Sbjct: 133 ERYPGGHDGLPGRSGGSPGRSDGAAG--HARLAIGRGTDRGR-YGAGPRRG 180
>ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|dbj|BAC45786.1|
blr0521 [Bradyrhizobium japonicum USDA 110]
Length = 745
Score = 53.5 bits (127), Expect = 2e-06
Identities = 51/171 (29%), Positives = 61/171 (34%), Gaps = 9/171 (5%)
Frame = -2
Query: 576 PPPRADPAPAALPPPAPPPCCQRGRTGPAPWPAR-RTRLPQSAAHPRCRARAG*WHVPGA 400
PP A P PAA PPP PPP + P P PA + P AA P+ H P
Sbjct: 84 PPAAAPPRPAAPPPPPPPPAARPAPPPPPPPPAAPKQPSPPPAAAPQ-------QHAPTP 136
Query: 399 AAAGCAAGRRGLQLSAAAPAARQQWRRRWPWRAASPPAPAPPPSD--APSAAGGRSPT*Q 226
A R A PAA Q P A+ P P PPP P+A +PT
Sbjct: 137 PPPAPPAARPAPTPPAPPPAAAPQHAPPPPPPPAARPTPTPPPPPPAGPAARPTPAPTAT 196
Query: 225 QL-----RGCPTRRVDGESPLCATSRSP-QEPCSYPRMRVYLQPSSAGAFP 91
PT R +P + +P P + P P S P
Sbjct: 197 PTPVAPPPAAPTARPGSPAPAATPAPTPTPAPTATPAPTATPAPGSTPGAP 247
Score = 45.8 bits (107), Expect = 4e-04
Identities = 42/121 (34%), Positives = 46/121 (37%), Gaps = 5/121 (4%)
Frame = -2
Query: 582 GAPP-PRADPAPAALPPPAPPPCCQRGRTGPAPWPARRTRLPQSAAHPRCRARAG*WHVP 406
G+PP P A PAP P P GR GPA PA P A P P
Sbjct: 268 GSPPAPGATPAPTTTPAPGGTATPPSGRPGPASTPAPGAATPAPTATP--APGGALTPPP 325
Query: 405 GAAAAGCAAGRRGLQLSAAAPA----ARQQWRRRWPWRAASPPAPAPPPSDAPSAAGGRS 238
G AG G +G A APA A P R A+ PA A PS P +A
Sbjct: 326 GRPGAGPTPGPQGGTPPAGAPAAGTPAAPPQAGGLPARPAA-PAGAAAPSTVPGSAAATP 384
Query: 237 P 235
P
Sbjct: 385 P 385
Score = 44.3 bits (103), Expect = 0.001
Identities = 43/148 (29%), Positives = 47/148 (31%), Gaps = 1/148 (0%)
Frame = -2
Query: 576 PPPRADPAPAALP-PPAPPPCCQRGRTGPAPWPARRTRLPQSAAHPRCRARAG*WHVPGA 400
PPP A PA P PPAPPP P P P P P P
Sbjct: 136 PPPPAPPAARPAPTPPAPPPAAAPQHAPPPPPPPAARPTPTPPPPP-----------PAG 184
Query: 399 AAAGCAAGRRGLQLSAAAPAARQQWRRRWPWRAASPPAPAPPPSDAPSAAGGRSPT*QQL 220
AA A P A R P AA+P AP P P+ + A +P
Sbjct: 185 PAARPTPAPTATPTPVAPPPAAPTARPGSPAPAATP-APTPTPAPTATPAPTATPAPGST 243
Query: 219 RGCPTRRVDGESPLCATSRSPQEPCSYP 136
G P G P SP S P
Sbjct: 244 PGAPPAGRPGAPPPGVRPGSPPAAGSPP 271
Score = 43.1 bits (100), Expect = 0.003
Identities = 46/162 (28%), Positives = 53/162 (32%)
Frame = -2
Query: 576 PPPRADPAPAALPPPAPPPCCQRGRTGPAPWPARRTRLPQSAAHPRCRARAG*WHVPGAA 397
P P A PAP A P P G T AP PA R P P AG PGA
Sbjct: 226 PAPTATPAPTATPAP--------GSTPGAP-PAGRPGAPPPGVRPGSPPAAGSPPAPGAT 276
Query: 396 AAGCAAGRRGLQLSAAAPAARQQWRRRWPWRAASPPAPAPPPSDAPSAAGGRSPT*QQLR 217
A G A P + R P +P A P P+ P+ G +P +
Sbjct: 277 PAPTTTPAPG---GTATPPS----GRPGPASTPAPGAATPAPTATPAPGGALTPPPGRPG 329
Query: 216 GCPTRRVDGESPLCATSRSPQEPCSYPRMRVYLQPSSAGAFP 91
PT G +P P P P AG P
Sbjct: 330 AGPTPGPQGGTP----------PAGAPAAGTPAAPPQAGGLP 361
Score = 37.4 bits (85), Expect = 0.15
Identities = 39/121 (32%), Positives = 46/121 (37%), Gaps = 8/121 (6%)
Frame = -2
Query: 573 PPRADPAPAALPPPAPPPCCQRGRTGPAPWPARRTRLPQSAAHPRCRARAG*WHVPGAAA 394
PP A P A P APPP AP PA P+ AA P P
Sbjct: 55 PPGAAPPAAPARPAAPPPAAAPPHPPAAPPPAAAP--PRPAAPPPPPPPPAARPAPPPPP 112
Query: 393 AGCAAGRRGLQLSAAAPAARQQWRRRWPWRAASPPAPAP--------PPSDAPSAAGGRS 238
AA ++ AAAP QQ A +PP PAP PP+ P+AA +
Sbjct: 113 PPPAAPKQPSPPPAAAP---QQ-------HAPTPPPPAPPAARPAPTPPAPPPAAAPQHA 162
Query: 237 P 235
P
Sbjct: 163 P 163
>ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) (rsr-1)
[Caenorhabditis elegans] gi|19571645|emb|CAB04214.3| C.
elegans RSR-1 protein (corresponding sequence F28D9.1)
[Caenorhabditis elegans]
Length = 601
Score = 52.0 bits (123), Expect = 6e-06
Identities = 58/195 (29%), Positives = 82/195 (41%), Gaps = 43/195 (22%)
Frame = -2
Query: 582 GAPPPRADPAPAALPPPA-----------PPPCCQRGRTGPAPWPARRTRLPQSAAHP-- 442
G+P R P+ + PPPA P P + R+ P PARR R P ++ P
Sbjct: 300 GSPRRRRSPSASKSPPPARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSPPP 359
Query: 441 ---RCRAR-----AG*WHVPGAAAAGCAAGRRGLQLSAAAPAARQQ----WRRRWPWRAA 298
R ++R A P A+ + A RR + +PA +++ RRR P +
Sbjct: 360 APKRAKSRSKSPPARRRRSPSASKSPPAPRRRRSPSKSRSPAPKREIPPARRRRSPSASK 419
Query: 297 SPPAP--------APP-------PSDAPSAAGGRSPT*QQLRGCPTRRVDGESPLCATSR 163
SPPAP +PP PS + S A R + + P RR SP + SR
Sbjct: 420 SPPAPKRAKSRSKSPPAPRRRRSPSQSKSPAPRRRRSPSKSPQAPRRR---RSPSGSKSR 476
Query: 162 SP---QEPCSYPRMR 127
SP + P + PR R
Sbjct: 477 SPRRRRSPAAAPRRR 491
Score = 42.4 bits (98), Expect = 0.005
Identities = 40/116 (34%), Positives = 49/116 (41%), Gaps = 14/116 (12%)
Frame = -2
Query: 576 PPPRADPAPAALP-PPAPPPCCQRGRTGPAPWPARRTRLPQSAAHPRCRARAG*WHVPGA 400
PP R +P+A PPAP R ++ PAP RR R P + P R R P A
Sbjct: 407 PPARRRRSPSASKSPPAPKRAKSRSKSPPAP---RRRRSPSQSKSPAPRRRRSPSKSPQA 463
Query: 399 A------AAGCAAGRRGLQLSAAAPAARQQ-WRRRWPWRAASPPA------PAPPP 271
+ + R + AAAP RQ RRR P R SP + P PPP
Sbjct: 464 PRRRRSPSGSKSRSPRRRRSPAAAPRRRQSPQRRRSPRRRRSPSSSSRSRSPPPPP 519
>ref|NP_506551.1| putative protein family member, with at least 2 transmembrane
domains (5O806) [Caenorhabditis elegans]
gi|7503652|pir||T22341 hypothetical protein F47B8.5 -
Caenorhabditis elegans gi|3877270|emb|CAB01192.1|
Hypothetical protein F47B8.5 [Caenorhabditis elegans]
Length = 581
Score = 50.8 bits (120), Expect = 1e-05
Identities = 54/168 (32%), Positives = 69/168 (40%), Gaps = 4/168 (2%)
Frame = -2
Query: 579 APPPRADPAPAA-LPPPAPPPCCQRGRTGPAPWPARRTRLPQSAAHPRCRARAG*WHVPG 403
A PP + PA AA PPPAP P PAP PA AA A AG G
Sbjct: 407 AAPPSSPPADAAPAPPPAPEPV-------PAPAPA------PEAAPVAPSADAG-----G 448
Query: 402 AAAAGCAAGRRGLQLSAAAPAARQQWRRRWPWRAASPPA---PAPPPSDAPSAAGGRSPT 232
AAA AG + PA +++ R + A+P A PAP P+ AP+ A +P
Sbjct: 449 YAAAAAPAG------GGSYPAKKRRVARDYAEGEAAPAAPAEPAPAPAPAPAPAPEAAPA 502
Query: 231 *QQLRGCPTRRVDGESPLCATSRSPQEPCSYPRMRVYLQPSSAGAFPK 88
+ +P A +P EP P V P+ A A P+
Sbjct: 503 PEPAPAPAPAPAPEAAPAAAPDAAPAEPAPVP--EVAPAPAPAPAAPE 548
Score = 41.6 bits (96), Expect = 0.008
Identities = 42/130 (32%), Positives = 47/130 (35%), Gaps = 9/130 (6%)
Frame = -2
Query: 579 APPPRADPAPAALPPPAPPPCCQRGRTGPAPWPARRTRLPQSAAHPRCRARAG*WHVPGA 400
AP A+PAPA P PAP P PAP PA P A P A P A
Sbjct: 478 APAAPAEPAPAPAPAPAPAP-----EAAPAPEPA-----PAPAPAPAPEA------APAA 521
Query: 399 AAAGCAAGRRGLQLSAAAPAARQQWRRRWPWRAASPPAPAPPPSD---------APSAAG 247
A A + A APA PAPA P SD AP+ G
Sbjct: 522 APDAAPAEPAPVPEVAPAPA----------------PAPAAPESDASGYSSGAAAPAGGG 565
Query: 246 GRSPT*QQLR 217
G P + +R
Sbjct: 566 GSYPAKKMMR 575
>ref|NP_034903.1| methyl-CpG binding domain protein 2 [Mus musculus]
gi|3800795|gb|AAC68872.1| methyl-CpG binding protein
MBD2 [Mus musculus] gi|5739188|gb|AAD50372.1| methyl-CpG
binding protein 2 [Mus musculus]
gi|37572285|gb|AAH46607.2| Methyl-CpG binding domain
protein 2 [Mus musculus]
Length = 414
Score = 50.8 bits (120), Expect = 1e-05
Identities = 46/131 (35%), Positives = 54/131 (41%), Gaps = 13/131 (9%)
Frame = +2
Query: 224 CCYVGLRPPAADGASDGGGAGAGGDAARHGQRRRHCWRAAGAAALS*RP----RRPAAHP 391
CC P +G S GG+GAGGD+A + +AL+ P RR A
Sbjct: 10 CC-----PEQEEGESAAGGSGAGGDSAIE--------QGGQGSALAPSPVSGVRREGARG 56
Query: 392 AAAAPGTCHQPARALHRGCAALCGR-----RVRRAGQGAGPVRPRWQHGG----GAGGGR 544
G Q AR +CGR R R G+G G R R Q GG G GGG
Sbjct: 57 GGRGRGRWKQAARG-----GGVCGRGRGRGRGRGRGRGRGRGRGRPQSGGSGLGGDGGGG 111
Query: 545 AAGAGSARGGG 577
A G G GGG
Sbjct: 112 AGGCGVGSGGG 122
