Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001277A_C01 KCC001277A_c01
(670 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_823399.1| putative protoporphyrinogen oxidase [Streptomyc... 40 0.041
ref|XP_098873.1| hypothetical protein XP_098873 [Homo sapiens] 39 0.053
ref|ZP_00004722.1| COG2255: Holliday junction resolvasome, helic... 39 0.070
ref|NP_834440.1| VrrB [Bacillus cereus ATCC 14579] gi|29898368|g... 39 0.091
ref|XP_304245.1| hypothetical protein XP_304245 [Homo sapiens] 39 0.091
>ref|NP_823399.1| putative protoporphyrinogen oxidase [Streptomyces avermitilis
MA-4680] gi|29605870|dbj|BAC69934.1| putative
protoporphyrinogen oxidase [Streptomyces avermitilis
MA-4680]
Length = 474
Score = 39.7 bits (91), Expect = 0.041
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Frame = +1
Query: 226 RYSRAAVAPSSLWTTTGT*RVACPSW--RRAPSTSHRRRPCSWTRRHAGPRRTPHGPRT* 399
R S A P+S WT+ T P+W RR+P+ S AGP P
Sbjct: 375 RRSSAGTTPAS-WTSRATTCARRPAWPPRRSPAASP-----------AGPTACRSTPSAT 422
Query: 400 RQPWATRASRATTCPPTPSRSRRWRC----PAPPSATSTSCKLKCNANG 534
+ W A+ + +CP +PS +RR PA P+ T A G
Sbjct: 423 TRAWPASATTSPSCPASPSAARRTTASASRPASPARTPPWSSWAATARG 471
>ref|XP_098873.1| hypothetical protein XP_098873 [Homo sapiens]
Length = 229
Score = 39.3 bits (90), Expect = 0.053
Identities = 36/119 (30%), Positives = 47/119 (39%), Gaps = 12/119 (10%)
Frame = +1
Query: 301 WRRAPSTSHRRRPCSWTRRHAGPRR-TPHGPRT*RQ----PWATRASRATTCPPTPSRSR 465
W P+ RR C TR A RR + PRT R+ P +R + C P SR
Sbjct: 4 WSCCPTRPSSRRSCLHTRTSATARRLSAPSPRTTRRVRGRPPPSRRAWTAVCAPPASRCS 63
Query: 466 RW-------RCPAPPSATSTSCKLKCNANGGKATRKATVVSSQMLSGSSCAGLLAQRHG 621
R RC P + TS CK ++ R + + +L SS G A R G
Sbjct: 64 RMATPAATRRCMLPGTTTSPPCKPSPGSSRSSCQRGQSYCTMSVLPPSS-PGCQAARSG 121
>ref|ZP_00004722.1| COG2255: Holliday junction resolvasome, helicase subunit
[Rhodobacter sphaeroides]
Length = 409
Score = 38.9 bits (89), Expect = 0.070
Identities = 30/82 (36%), Positives = 33/82 (39%)
Frame = +1
Query: 262 WTTTGT*RVACPSWRRAPSTSHRRRPCSWTRRHAGPRRTPHGPRT*RQPWATRASRATTC 441
W TTG C R P T RR W R PR P PR A R + +C
Sbjct: 3 WATTG-----CSRPTRTPPTGSRRS-APWPRARRRPRAFPAWPRA-----AVRGADGASC 51
Query: 442 PPTPSRSRRWRCPAPPSATSTS 507
P+RSR PA PS TS
Sbjct: 52 LHPPARSR--NVPANPSERMTS 71
>ref|NP_834440.1| VrrB [Bacillus cereus ATCC 14579] gi|29898368|gb|AAP11641.1| VrrB
[Bacillus cereus ATCC 14579]
Length = 295
Score = 38.5 bits (88), Expect = 0.091
Identities = 18/41 (43%), Positives = 22/41 (52%), Gaps = 1/41 (2%)
Frame = +2
Query: 389 QEHEGNHGLQGHPEQLPAHQHRHAQGGGGAR-HHRAQLQLH 508
Q+H G+HG GH Q H H H QG G HH+ Q+ H
Sbjct: 181 QDHHGHHGHHGHQGQHGHHGHHHHQGHHGHHGHHQQQVHHH 221
Score = 35.8 bits (81), Expect = 0.59
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Frame = +2
Query: 317 QLHTDDARVHGLGATLAQGEPHMAQEHEGNHGLQGHPEQLPAH-----------QHRHAQ 463
Q+H D HG Q H H+G+HG GH +Q H QH H Q
Sbjct: 178 QIHQDHHGHHGHHGHQGQHGHHGHHHHQGHHGHHGHHQQQVHHHGHQGHHGHQGQHGH-Q 236
Query: 464 GGGGARHHRAQLQLH 508
G G +H + Q H
Sbjct: 237 GYQGQQHQQHQQHQH 251
Score = 32.7 bits (73), Expect = 5.0
Identities = 17/44 (38%), Positives = 19/44 (42%), Gaps = 1/44 (2%)
Frame = +2
Query: 380 HMAQEHEGNHGLQGHPEQLPAHQHRHAQGGGGAR-HHRAQLQLH 508
H Q H G+HG H H H H QG G HH+ Q H
Sbjct: 122 HHHQGHHGHHGHHHHQGHHGHHGHHHHQGHHGHHGHHQQQAHHH 165
>ref|XP_304245.1| hypothetical protein XP_304245 [Homo sapiens]
Length = 208
Score = 38.5 bits (88), Expect = 0.091
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 283 RVACPSWRRAPSTSHRRRPCSWTRRHAGPRRTPHGPRT*RQPWAT-RASRATTCPPTPSR 459
R AC P T+ R RP T AG P + R W++ +SRATTCP T +R
Sbjct: 80 RPACTPTTTTPCTARRSRPGCPTPAGAGAHWPAGRPSSARARWSSCSSSRATTCPSTCAR 139
Query: 460 SRRWR 474
R R
Sbjct: 140 PARTR 144
