KCC001273A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001273A_C01 KCC001273A_c01
GCACGAGGCTACGCCTGCGATCTTGCAAGAAGCGTCTCGCAACCAACCCTCGGCTAACAG
ACCAAAATTGCCTCCGTCGCTTGCATCTCTTCTAGGTTCGGCAGCAGCCCAAATCCTTAC
ACATGGCGTCTCAGATGAACGTGCGTCGCAGCGCTGGCCAGCGCCAGTCGCAGCGCTCCG
GAGCTGGCCCCTGCATCGTGGCGAGCTACCGTCTCACGCACCACCGCGGCGCTAACGCGA
CGCCATATGGGCAAGCGTGCCTGGCGATTCGCGTGCAGGAGCAGCGTCGGGAGCAGTCGC
TGCTCATGTGCCGGTCCACACCAGTTGAGGCCCCTGCCGCACCCGCGGCGGAGGCACCCA
CCGCTGACGCCGACCCCGCCTCCATGGACATTCGCGTGGGCAAGATCGTGAAGGTTGAGA
AGCACCCAGAGGCGGACAGCCTGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001273A_C01 KCC001273A_c01
         (444 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_314551.1| ENSANGP00000016933 [Anopheles gambiae] gi|21297...    45  3e-04
ref|NP_598912.2| tyrosyl-tRNA synthetase [Mus musculus] gi|26345...    44  5e-04
ref|NP_003671.1| tyrosyl-tRNA synthetase; tyrosyl-tRNA synthetas...    44  7e-04
ref|XP_109408.1| similar to tyrosyl-tRNA synthetase; expressed s...    43  9e-04
dbj|BAC26120.1| unnamed protein product [Mus musculus]                 43  9e-04

>ref|XP_314551.1| ENSANGP00000016933 [Anopheles gambiae] gi|21297814|gb|EAA09959.1|
           ENSANGP00000016933 [Anopheles gambiae str. PEST]
          Length = 351

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 31/97 (31%), Positives = 47/97 (47%), Gaps = 7/97 (7%)
 Frame = +3

Query: 174 RSGAGPCIVASYRLTHHRGANATPYGQACLAIRVQEQRREQSLLMCRSTPVEAPA----- 338
           R+G+GP  V    +     A  +P  Q     + Q+++ +      +    E PA     
Sbjct: 120 RAGSGPATVKMEPVAQPPAAKESPKEQP--PAKAQQKQSDSKPPKEKKPKKEKPAGGEGK 177

Query: 339 --APAAEAPTADADPASMDIRVGKIVKVEKHPEADSL 443
             APA E P  D     +D+RVG+IV+V +HP+ADSL
Sbjct: 178 PAAPAVEEPPIDV--GRLDMRVGRIVEVSRHPDADSL 212

>ref|NP_598912.2| tyrosyl-tRNA synthetase [Mus musculus] gi|26345546|dbj|BAC36424.1|
           unnamed protein product [Mus musculus]
          Length = 528

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 19/34 (55%), Positives = 26/34 (75%)
 Frame = +3

Query: 342 PAAEAPTADADPASMDIRVGKIVKVEKHPEADSL 443
           PA  +   +  P+ +DIRVGKI++VEKHP+ADSL
Sbjct: 354 PAKNSEPEEVIPSRLDIRVGKILRVEKHPDADSL 387

>ref|NP_003671.1| tyrosyl-tRNA synthetase; tyrosyl-tRNA synthetase; tyrosyl tRNA
           ligase [Homo sapiens] gi|13638438|sp|P54577|SYY_HUMAN
           Tyrosyl-tRNA synthetase (Tyrosyl--tRNA ligase) (TyrRS)
           gi|2665519|gb|AAB88409.1| tyrosyl-tRNA synthetase [Homo
           sapiens] gi|12804961|gb|AAH01933.1| Tyrosyl-tRNA
           synthetase [Homo sapiens] gi|13278750|gb|AAH04151.1|
           YARS protein [Homo sapiens] gi|16741793|gb|AAH16689.1|
           Tyrosyl-tRNA synthetase [Homo sapiens]
          Length = 528

 Score = 43.5 bits (101), Expect = 7e-04
 Identities = 19/34 (55%), Positives = 25/34 (72%)
 Frame = +3

Query: 342 PAAEAPTADADPASMDIRVGKIVKVEKHPEADSL 443
           PA  +   +  P+ +DIRVGKI+ VEKHP+ADSL
Sbjct: 354 PAKNSEPEEVIPSRLDIRVGKIITVEKHPDADSL 387

>ref|XP_109408.1| similar to tyrosyl-tRNA synthetase; expressed sequence AL024047
           [Mus musculus]
          Length = 473

 Score = 43.1 bits (100), Expect = 9e-04
 Identities = 19/34 (55%), Positives = 25/34 (72%)
 Frame = +3

Query: 342 PAAEAPTADADPASMDIRVGKIVKVEKHPEADSL 443
           PA  +   +  P+ +DIRVGKI+ VEKHP+ADSL
Sbjct: 299 PAKNSEPEEVIPSRLDIRVGKILSVEKHPDADSL 332

>dbj|BAC26120.1| unnamed protein product [Mus musculus]
          Length = 528

 Score = 43.1 bits (100), Expect = 9e-04
 Identities = 19/34 (55%), Positives = 25/34 (72%)
 Frame = +3

Query: 342 PAAEAPTADADPASMDIRVGKIVKVEKHPEADSL 443
           PA  +   +  P+ +DIRVGKI+ VEKHP+ADSL
Sbjct: 354 PAKNSEPEEVIPSRLDIRVGKILSVEKHPDADSL 387



EST assemble image


clone accession position
1 MXL001g03_r BP092979 1 430
2 CM032g05_r AV388510 4 447
3 CM037a03_r AV388890 4 403




Chlamydomonas reinhardtii
Kazusa DNA Research Institute