KCC001265A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001265A_C01 KCC001265A_c01
cattattaattcatgaacagagtgtacaaagcGCCGCCAGCTACTGTCATTCTGCGTACC
GTTGCCTGCCAGCATAGTGAACCACCGAGATGGCCTCGCTTCAGTGCAATATGCGTCCGG
CTACCACCATTTTGACGCGGCGCCCGGCTCAGGTTGCGCGCAAATCTATTGGCGTAGCGC
GAAGCCAGACTGTGCGCGTCACGGCTTCTGGAATGGCCCCCGATTTGAAGAAGTCCATTG
ACGAGCTTATTGCATCCAACAAAGTGGTGGTTTTCATGAAGGGCACCCGCCAGTTCCCAA
TGTGTGGCTTCTCCAACACCGTGGTGCAGATCCTGAACGTGATGGATGTGCCGTACCAGA
CCGTTAACATTCTGGAGGACGACGCCATCCGCAGCGGCATGAAGGAGTACAGCCAATGGC
CCACCTTCCCGCAGGTTTATATTAACGGCGACTTCTTCGGCGGTTGCGACATTATGATGG
AGGCCTACCAGTCCGGCGAGCTGAAGGAGCAGCTGGAGATTGCCCTCAACTCCTAGAAGG
GGAGAAGGGGAGGGAGCATGTGAGGGAGGCGATGGGAGGGGCGGACAGGCGAGCGGTTGC
GACAGGCTGTAGCACAGACCGAAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001265A_C01 KCC001265A_c01
         (624 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO20065.1| hypothetical protein [Oryza sativa (japonica cult...   162  4e-39
gb|AAO19647.1| CAXIP1 protein [Arabidopsis thaliana]                  157  2e-37
ref|NP_191050.1| CAXIP1 protein (CAXIP1) [Arabidopsis thaliana] ...   157  2e-37
ref|NP_440398.1| hypothetical protein [Synechocystis sp. PCC 680...   147  1e-34
ref|NP_681664.1| ORF_ID:tll0874~hypothetical protein [Thermosyne...   146  3e-34

>gb|AAO20065.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 168

 Score =  162 bits (410), Expect = 4e-39
 Identities = 76/151 (50%), Positives = 114/151 (75%), Gaps = 4/151 (2%)
 Frame = +3

Query: 93  ASLQCNMRPATTILTRRPAQVARKSIGVARSQTVRVTAS----GMAPDLKKSIDELIASN 260
           ASL   +     +L R      R S+G AR+++ R  A+    G+AP+++ ++D+++ S+
Sbjct: 18  ASLPRPVSARVPLLPRASPPTWRLSVGSARARSTRCLAAAGGGGLAPEMRATLDKVVGSH 77

Query: 261 KVVVFMKGTRQFPMCGFSNTVVQILNVMDVPYQTVNILEDDAIRSGMKEYSQWPTFPQVY 440
           KVV+FMKGT+ FP CGFS+TVVQIL  +DVP++T+++L ++A+R G+KEYS WPTFPQ+Y
Sbjct: 78  KVVLFMKGTKDFPQCGFSHTVVQILRSLDVPFETLDVLANEALRQGLKEYSSWPTFPQLY 137

Query: 441 INGDFFGGCDIMMEAYQSGELKEQLEIALNS 533
           I+G+FFGGCDI ++AY+SGEL+E LE A+ S
Sbjct: 138 IDGEFFGGCDITVDAYKSGELQETLEKAMLS 168

>gb|AAO19647.1| CAXIP1 protein [Arabidopsis thaliana]
          Length = 173

 Score =  157 bits (396), Expect = 2e-37
 Identities = 73/151 (48%), Positives = 109/151 (71%)
 Frame = +3

Query: 81  TTEMASLQCNMRPATTILTRRPAQVARKSIGVARSQTVRVTASGMAPDLKKSIDELIASN 260
           T +  S++ +++P + ++          S    +    R +AS + P LK ++++L+ S 
Sbjct: 23  TNKPHSIRFSLKPTSALVVHNHQLSFYGSNLKLKPTKFRCSASALTPQLKDTLEKLVNSE 82

Query: 261 KVVVFMKGTRQFPMCGFSNTVVQILNVMDVPYQTVNILEDDAIRSGMKEYSQWPTFPQVY 440
           KVV+FMKGTR FPMCGFSNTVVQIL  ++VP++ VNILE++ +R G+KEYS WPTFPQ+Y
Sbjct: 83  KVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLY 142

Query: 441 INGDFFGGCDIMMEAYQSGELKEQLEIALNS 533
           I G+FFGGCDI +EA+++GEL+E++E A+ S
Sbjct: 143 IGGEFFGGCDITLEAFKTGELQEEVEKAMCS 173

>ref|NP_191050.1| CAXIP1 protein (CAXIP1) [Arabidopsis thaliana]
           gi|7448386|pir||T06730 hypothetical protein F28P10.120 -
           Arabidopsis thaliana gi|4678303|emb|CAB41094.1| putative
           protein [Arabidopsis thaliana]
           gi|14326510|gb|AAK60300.1|AF385708_1
           AT3g54900/F28P10_120 [Arabidopsis thaliana]
           gi|18700222|gb|AAL77721.1| AT3g54900/F28P10_120
           [Arabidopsis thaliana]
          Length = 173

 Score =  157 bits (396), Expect = 2e-37
 Identities = 73/151 (48%), Positives = 109/151 (71%)
 Frame = +3

Query: 81  TTEMASLQCNMRPATTILTRRPAQVARKSIGVARSQTVRVTASGMAPDLKKSIDELIASN 260
           T +  S++ +++P + ++          S    +    R +AS + P LK ++++L+ S 
Sbjct: 23  TNKPHSIRFSLKPTSALVVHNHQLSFYGSNLKLKPTKFRCSASALTPQLKDTLEKLVNSE 82

Query: 261 KVVVFMKGTRQFPMCGFSNTVVQILNVMDVPYQTVNILEDDAIRSGMKEYSQWPTFPQVY 440
           KVV+FMKGTR FPMCGFSNTVVQIL  ++VP++ VNILE++ +R G+KEYS WPTFPQ+Y
Sbjct: 83  KVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLY 142

Query: 441 INGDFFGGCDIMMEAYQSGELKEQLEIALNS 533
           I G+FFGGCDI +EA+++GEL+E++E A+ S
Sbjct: 143 IGGEFFGGCDITLEAFKTGELQEEVEKAMCS 173

>ref|NP_440398.1| hypothetical protein [Synechocystis sp. PCC 6803]
           gi|3025188|sp|P73056|YI46_SYNY3 Hypothetical protein
           slr1846 gi|7448385|pir||S75164 hypothetical protein
           slr1846 - Synechocystis sp. (strain PCC 6803)
           gi|1652154|dbj|BAA17078.1| ORF_ID:slr1846~hypothetical
           protein [Synechocystis sp. PCC 6803]
          Length = 107

 Score =  147 bits (371), Expect = 1e-34
 Identities = 65/107 (60%), Positives = 86/107 (79%)
 Frame = +3

Query: 213 MAPDLKKSIDELIASNKVVVFMKGTRQFPMCGFSNTVVQILNVMDVPYQTVNILEDDAIR 392
           M P+ K  ID+L+ +NKV+VFMKGT+  P CGFSN VVQILN++ +P++T+++L D  IR
Sbjct: 1   MNPETKARIDQLVTANKVMVFMKGTKLMPQCGFSNNVVQILNMLGIPFETLDVLADAEIR 60

Query: 393 SGMKEYSQWPTFPQVYINGDFFGGCDIMMEAYQSGELKEQLEIALNS 533
            G+KEYS WPT PQVY+NG+F GG DIM+E YQ+GEL+E LE+AL S
Sbjct: 61  QGIKEYSNWPTIPQVYVNGEFVGGSDIMIELYQNGELQEMLEVALAS 107

>ref|NP_681664.1| ORF_ID:tll0874~hypothetical protein [Thermosynechococcus elongatus
           BP-1] gi|22294596|dbj|BAC08426.1|
           ORF_ID:tll0874~hypothetical protein [Thermosynechococcus
           elongatus BP-1]
          Length = 121

 Score =  146 bits (368), Expect = 3e-34
 Identities = 65/107 (60%), Positives = 84/107 (77%)
 Frame = +3

Query: 213 MAPDLKKSIDELIASNKVVVFMKGTRQFPMCGFSNTVVQILNVMDVPYQTVNILEDDAIR 392
           M P+L   ID L+ SNK++VFMKG++  P CGFSN  VQILN + VPY+TV++LED  IR
Sbjct: 15  MTPELHAKIDNLVKSNKIIVFMKGSKLMPQCGFSNNAVQILNALGVPYETVDVLEDFEIR 74

Query: 393 SGMKEYSQWPTFPQVYINGDFFGGCDIMMEAYQSGELKEQLEIALNS 533
            G+KEYS WPT PQV+ING+F GG DI++E YQSGEL++ +E+AL S
Sbjct: 75  QGIKEYSNWPTIPQVFINGEFIGGSDILIELYQSGELQQLVEVALAS 121



EST assemble image


clone accession position
1 HC057g06_r AV636306 1 454
2 CM061f07_r AV390622 26 628
3 CM031g09_r AV388354 33 241
4 MX030g07_r BP087285 38 400
5 CM081g02_r AV391891 38 628
6 CM080e09_r AV392053 38 548




Chlamydomonas reinhardtii
Kazusa DNA Research Institute